Warning: Permanently added '44.201.154.188' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/11094066-fedora-rawhide-aarch64 --chroot fedora-rawhide-aarch64 Version: 1.10 PID: 12251 Logging PID: 12253 Task: {'allow_user_ssh': False, 'appstream': False, 'background': False, 'build_id': 11094066, 'buildroot_pkgs': [], 'chroot': 'fedora-rawhide-aarch64', 'enable_net': False, 'fedora_review': False, 'git_hash': '51a8078d7bb9717224da26615833ce7fd739017d', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/growl/mpich-rdep-check/gromacs', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'gromacs', 'package_version': '2026.3-1', 'project_dirname': 'mpich-rdep-check', 'project_name': 'mpich-rdep-check', 'project_owner': 'growl', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/growl/mpich-rdep-check/fedora-rawhide-aarch64/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None, 'repo_gpgcheck': False}], 'sandbox': 'growl/mpich-rdep-check--growl', 'source_json': {}, 'source_type': None, 'ssh_public_keys': None, 'storage': 1, 'submitter': 'growl', 'tags': [], 'task_id': '11094066-fedora-rawhide-aarch64', 'timeout': 86400, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/growl/mpich-rdep-check/gromacs /var/lib/copr-rpmbuild/workspace/workdir-faomxkci/gromacs --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/growl/mpich-rdep-check/gromacs', '/var/lib/copr-rpmbuild/workspace/workdir-faomxkci/gromacs', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-faomxkci/gromacs'... Running: git checkout 51a8078d7bb9717224da26615833ce7fd739017d -- cmd: ['git', 'checkout', '51a8078d7bb9717224da26615833ce7fd739017d', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-faomxkci/gromacs rc: 0 stdout: stderr: Note: switching to '51a8078d7bb9717224da26615833ce7fd739017d'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 51a8078 automatic import of gromacs Running: dist-git-client sources cmd: ['dist-git-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-faomxkci/gromacs rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading gromacs-2026.3.tar.gz INFO: Reading stdout from command: curl --help all INFO: Calling: curl -H Pragma: -H 'Accept-Encoding: identity' -o gromacs-2026.3.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/growl/mpich-rdep-check/gromacs/gromacs-2026.3.tar.gz/md5/7987af0c6ab939ab6e639f32d0dd260f/gromacs-2026.3.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 43.78M 100 43.78M 0 0 20.98M 0 00:02 00:02 20.74M INFO: Reading stdout from command: md5sum gromacs-2026.3.tar.gz INFO: Downloading manual-2026.3.pdf INFO: Calling: curl -H Pragma: -H 'Accept-Encoding: identity' -o manual-2026.3.pdf --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/growl/mpich-rdep-check/gromacs/manual-2026.3.pdf/md5/7cbfb3b6aad1e8c09bd2fa35da1c8ee4/manual-2026.3.pdf % Total % Received % Xferd Average Speed Time Time Time Current tail: /var/lib/copr-rpmbuild/main.log: file truncated Dload Upload Total Spent Left Speed 100 13.27M 100 13.27M 0 0 37.89M 0 0 INFO: Reading stdout from command: md5sum manual-2026.3.pdf INFO: Downloading regressiontests-2026.3.tar.gz INFO: Calling: curl -H Pragma: -H 'Accept-Encoding: identity' -o regressiontests-2026.3.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/growl/mpich-rdep-check/gromacs/regressiontests-2026.3.tar.gz/md5/2efca4799115329160ccaf84ce442baf/regressiontests-2026.3.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 15.81M 100 15.81M 0 0 31.75M 0 0 INFO: Reading stdout from command: md5sum regressiontests-2026.3.tar.gz Running (timeout=86400): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-faomxkci/gromacs/gromacs.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-faomxkci/gromacs --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1791482221.889122 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 6.9 starting (python version = 3.14.5, NVR = mock-6.9-1.fc44), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-faomxkci/gromacs/gromacs.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-faomxkci/gromacs --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1791482221.889122 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-faomxkci/gromacs/gromacs.spec) Config(fedora-rawhide-aarch64) Start: clean chroot Finish: clean chroot Mock Version: 6.9 INFO: Mock Version: 6.9 Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-aarch64-bootstrap-1791482221.889122/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: Guessed host environment type: unknown INFO: Using container image: registry.fedoraproject.org/fedora:rawhide INFO: Pulling image: registry.fedoraproject.org/fedora:rawhide INFO: Tagging container image as mock-bootstrap-052eff50-b500-4af0-aded-e3963a977228 INFO: Checking that 5a093df20430be387c41ef65bfb382893ec11c461d79664234c8a753ccf30144 image matches host's architecture INFO: Copy content of container 5a093df20430be387c41ef65bfb382893ec11c461d79664234c8a753ccf30144 to /var/lib/mock/fedora-rawhide-aarch64-bootstrap-1791482221.889122/root INFO: mounting 5a093df20430be387c41ef65bfb382893ec11c461d79664234c8a753ccf30144 with podman image mount INFO: image 5a093df20430be387c41ef65bfb382893ec11c461d79664234c8a753ccf30144 as /var/lib/containers/storage/overlay/02917baf66f4ae30e9fb848d36fec079cd0b6288e744d698c528a9215629ebfc/merged INFO: umounting image 5a093df20430be387c41ef65bfb382893ec11c461d79664234c8a753ccf30144 (/var/lib/containers/storage/overlay/02917baf66f4ae30e9fb848d36fec079cd0b6288e744d698c528a9215629ebfc/merged) with podman image umount INFO: Removing image mock-bootstrap-052eff50-b500-4af0-aded-e3963a977228 INFO: Package manager dnf5 detected and used (fallback) INFO: Not updating bootstrap chroot, bootstrap_image_ready=True Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-aarch64-1791482221.889122/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf5 detected and used (direct choice) INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-6.1.0-1.fc46.aarch64 rpm-sequoia-1.10.3-1.fc46.aarch64 dnf5-5.4.6.0-1.fc46.aarch64 dnf5-plugins-5.4.6.0-1.fc46.aarch64 Start: installing minimal buildroot with dnf5 Updating and loading repositories: Copr repository 100% | 509.4 KiB/s | 307.2 KiB | 00m01s fedora 100% | 12.2 MiB/s | 21.0 MiB | 00m02s Repositories loaded. Package Arch Version Repository Size Installing group/module packages: bash aarch64 0:5.3.20-1.fc46 fedora 8.4 MiB bzip2 aarch64 0:1.0.8-24.fc45 fedora 171.2 KiB coreutils aarch64 0:9.12-1.fc46 fedora 8.6 MiB cpio aarch64 0:2.15-10.fc45 fedora 1.1 MiB diffutils aarch64 0:3.12-6.fc45 fedora 1.6 MiB fedora-release-common noarch 0:46-0.1 fedora 4.6 KiB findutils aarch64 1:4.11.0-2.fc45 fedora 2.0 MiB gawk aarch64 0:5.4.1-1.fc45 fedora 2.9 MiB glibc-minimal-langpack aarch64 0:2.44.9000-4.fc46 fedora 0.0 B grep aarch64 0:3.12-4.fc45 fedora 1.0 MiB gzip aarch64 0:1.14-4.fc45 fedora 437.6 KiB info aarch64 0:7.3-3.fc45 fedora 424.4 KiB patch aarch64 0:2.8-6.fc46 fedora 262.4 KiB redhat-rpm-config noarch 0:345-4.fc46 fedora 184.2 KiB rpm-build aarch64 0:6.1.0-1.fc46 fedora 616.1 KiB sed aarch64 0:4.10-2.fc45 fedora 878.4 KiB shadow-utils aarch64 2:4.20.0-1.fc45 fedora 4.4 MiB tar aarch64 2:1.35-9.fc45 fedora 3.0 MiB unzip aarch64 0:6.0-71.fc45 fedora 469.9 KiB util-linux aarch64 0:2.42.4-2.fc46 fedora 6.9 MiB which aarch64 0:2.25-2.fc45 fedora 123.6 KiB xz aarch64 1:5.8.4-1.fc46 fedora 1.5 MiB Installing dependencies: R-srpm-macros noarch 0:1.3.7-3.fc45 fedora 3.5 KiB add-determinism aarch64 0:0.7.3-3.fc45 fedora 1.9 MiB alternatives aarch64 0:1.33-6.fc45 fedora 90.1 KiB ansible-srpm-macros noarch 0:1-22.fc45 fedora 35.7 KiB audit-libs aarch64 0:4.2.1-2.fc45 fedora 486.7 KiB binutils aarch64 0:2.47.50-12.fc46 fedora 27.2 MiB build-reproducibility-srpm-macros noarch 0:0.7.3-3.fc45 fedora 1.2 KiB bzip2-libs aarch64 0:1.0.8-24.fc45 fedora 72.5 KiB ca-certificates noarch 0:2026.2.90_v9.0.317-1.fc46 fedora 2.6 MiB cmake-srpm-macros noarch 0:4.3.0-5.fc45 fedora 524.0 B coreutils-common aarch64 0:9.12-1.fc46 fedora 11.5 MiB crypto-policies noarch 0:20260713-2.gitc42da77.fc45 fedora 134.3 KiB curl aarch64 0:8.23.0~rc2-1.fc46 fedora 525.6 KiB cyrus-sasl-lib aarch64 0:2.1.28-37.fc45 fedora 2.4 MiB debugedit aarch64 0:5.3-3.fc45 fedora 320.9 KiB dwz aarch64 0:0.17-3.fc45 fedora 322.7 KiB ed aarch64 0:1.22.6-1.fc46 fedora 158.9 KiB efi-srpm-macros noarch 0:6-9.fc45 fedora 40.3 KiB elfutils aarch64 0:0.196-1.fc46 fedora 3.8 MiB elfutils-debuginfod-client aarch64 0:0.196-1.fc46 fedora 144.0 KiB elfutils-libelf aarch64 0:0.196-1.fc46 fedora 1.5 MiB elfutils-libs aarch64 0:0.196-1.fc46 fedora 746.6 KiB erlang-srpm-macros noarch 0:0.4.0-1.fc46 fedora 2.0 KiB fedora-gpg-keys noarch 0:46-0.3 fedora 130.3 KiB fedora-release noarch 0:46-0.1 fedora 0.0 B fedora-release-identity-basic noarch 0:46-0.1 fedora 664.0 B fedora-repos noarch 0:46-0.3 fedora 4.9 KiB fedora-repos-rawhide noarch 0:46-0.3 fedora 2.2 KiB file aarch64 0:5.48-3.fc46 fedora 141.9 KiB file-libs aarch64 0:5.48-3.fc46 fedora 12.4 MiB filesystem aarch64 0:3.18-59.fc45 fedora 112.0 B filesystem-srpm-macros noarch 0:3.18-59.fc45 fedora 38.2 KiB fips-provider aarch64 0:1.5.3-1.fc46 fedora 3.8 MiB fonts-srpm-macros noarch 1:5.0.0-4.fc45 fedora 55.8 KiB forge-srpm-macros noarch 0:0.4.0-5.fc45 fedora 38.9 KiB fpc-srpm-macros noarch 0:1.3-17.fc45 fedora 144.0 B gap-srpm-macros noarch 0:2-3.fc45 fedora 2.1 KiB gdb-minimal aarch64 0:17.2-6.fc46 fedora 13.5 MiB gdbm-libs aarch64 1:1.26-1.fc46 fedora 234.3 KiB ghc-srpm-macros noarch 0:1.10-2.fc45 fedora 792.0 B glibc aarch64 0:2.44.9000-4.fc46 fedora 6.6 MiB glibc-common aarch64 0:2.44.9000-4.fc46 fedora 1.3 MiB glibc-gconv-extra aarch64 0:2.44.9000-4.fc46 fedora 18.6 MiB gmp aarch64 1:6.3.0-6.fc45 fedora 657.9 KiB gnat-srpm-macros noarch 0:7-3.fc45 fedora 1.0 KiB gnome-srpm-macros noarch 0:1.0-2.fc45 fedora 3.5 KiB gnulib-l10n noarch 0:20241231-4.fc45 fedora 655.0 KiB gnupg2 aarch64 0:2.4.9-18.fc45 fedora 6.4 MiB gnupg2-dirmngr aarch64 0:2.4.9-18.fc45 fedora 646.1 KiB gnupg2-gpg-agent aarch64 0:2.4.9-18.fc45 fedora 846.9 KiB gnupg2-gpgconf aarch64 0:2.4.9-18.fc45 fedora 321.8 KiB gnupg2-keyboxd aarch64 0:2.4.9-18.fc45 fedora 233.2 KiB gnupg2-verify aarch64 0:2.4.9-18.fc45 fedora 364.3 KiB gnutls aarch64 0:3.8.13-5.fc46 fedora 3.7 MiB go-srpm-macros noarch 0:3.8.0-3.fc45 fedora 61.9 KiB gpgverify noarch 0:2.2-5.fc45 fedora 8.7 KiB ima-evm-utils-libs aarch64 0:1.6.2-12.fc45 fedora 92.6 KiB jansson aarch64 0:2.14-5.fc45 fedora 93.0 KiB java-srpm-macros noarch 0:1-9.fc45 fedora 870.0 B json-c aarch64 0:0.18-9.fc45 fedora 138.5 KiB kernel-srpm-macros noarch 0:1.0-30.fc45 fedora 1.9 KiB keyutils-libs aarch64 0:1.6.3-8.fc45 fedora 98.2 KiB krb5-libs aarch64 0:1.22.2-9.fc45 fedora 2.5 MiB libacl aarch64 0:2.4.0-2.fc45 fedora 67.9 KiB libarchive aarch64 0:3.8.9-2.fc46 fedora 975.7 KiB libassuan aarch64 0:2.5.7-6.fc45 fedora 215.9 KiB libattr aarch64 0:2.6.0-2.fc45 fedora 68.4 KiB libblkid aarch64 0:2.42.4-2.fc46 fedora 290.3 KiB libbrotli aarch64 0:1.2.0-6.fc45 fedora 909.2 KiB libcap aarch64 0:2.78-2.fc45 fedora 508.4 KiB libcap-ng aarch64 0:0.9.6-1.fc46 fedora 160.9 KiB libcbor aarch64 0:0.14.0-3.fc45 fedora 139.6 KiB libcom_err aarch64 0:1.47.4-2.fc45 fedora 111.1 KiB libcurl aarch64 0:8.23.0~rc2-1.fc46 fedora 1.0 MiB libeconf aarch64 0:0.7.9-4.fc45 fedora 80.8 KiB libevent aarch64 0:2.1.13-1.fc46 fedora 1.1 MiB libfdisk aarch64 0:2.42.4-2.fc46 fedora 418.8 KiB libffi aarch64 0:3.8.0-1.fc46 fedora 159.6 KiB libfido2 aarch64 0:1.17.0-6.fc46 fedora 280.7 KiB libfsverity aarch64 0:1.7-4.fc45 fedora 68.4 KiB libgcc aarch64 0:16.2.1-2.fc46.1 fedora 222.3 KiB libgcrypt aarch64 0:1.12.4-1.fc46 fedora 1.2 MiB libgomp aarch64 0:16.2.1-2.fc46.1 fedora 592.9 KiB libgpg-error aarch64 0:1.61-2.fc45 fedora 997.9 KiB libidn2 aarch64 0:2.3.8-4.fc45 fedora 560.5 KiB libksba aarch64 0:1.8.1-1.fc46 fedora 407.8 KiB liblastlog2 aarch64 0:2.42.4-2.fc46 fedora 137.8 KiB libmount aarch64 0:2.42.4-2.fc46 fedora 420.4 KiB libnghttp2 aarch64 0:1.69.0-6.fc46 fedora 197.9 KiB libnghttp3 aarch64 0:1.18.0-1.fc45 fedora 206.8 KiB libpfm aarch64 0:4.13.0-23.fc45 fedora 252.0 KiB libpkgconf aarch64 0:2.5.1-2.fc45 fedora 134.0 KiB libpsl aarch64 0:0.23.3-1.fc46 fedora 132.5 KiB libselinux aarch64 0:3.11-5.fc46 fedora 265.2 KiB libselinux-utils aarch64 0:3.11-5.fc46 fedora 1.3 MiB libsemanage aarch64 0:3.11-4.fc46 fedora 360.3 KiB libsepol aarch64 0:3.11-2.fc45 fedora 809.9 KiB libsmartcols aarch64 0:2.42.4-2.fc46 fedora 224.4 KiB libssh aarch64 0:0.12.2-1.fc45 fedora 721.4 KiB libssh-config noarch 0:0.12.2-1.fc45 fedora 277.0 B libstdc++ aarch64 0:16.2.1-2.fc46.1 fedora 3.0 MiB libtasn1 aarch64 0:4.21.0-2.fc45 fedora 220.7 KiB libtool-ltdl aarch64 0:2.6.2-1.fc46 fedora 93.9 KiB libunistring aarch64 0:1.1-12.fc45 fedora 1.7 MiB libusb1 aarch64 0:1.0.30-2.fc45 fedora 179.7 KiB libuuid aarch64 0:2.42.4-2.fc46 fedora 69.3 KiB libverto aarch64 0:0.3.2-13.fc45 fedora 69.3 KiB libxcrypt aarch64 0:4.5.2-4.fc45 fedora 273.2 KiB libxml2 aarch64 0:2.15.4-1.fc46 fedora 1.7 MiB libzstd aarch64 0:1.5.7-6.fc45 fedora 860.3 KiB linkdupes aarch64 0:0.7.3-3.fc45 fedora 711.0 KiB lua-libs aarch64 0:5.5.1-2.fc46 fedora 330.0 KiB lua-srpm-macros noarch 0:1-18.fc45 fedora 1.3 KiB lz4-libs aarch64 0:1.10.0-5.fc45 fedora 197.3 KiB meson-srpm-macros noarch 0:1.12.1-2.fc46 fedora 1.7 KiB mpfr aarch64 0:4.2.2-4.fc45 fedora 755.4 KiB ncurses-base noarch 0:6.6-3.fc45 fedora 329.7 KiB ncurses-libs aarch64 0:6.6-3.fc45 fedora 1.2 MiB nettle aarch64 0:4.0-5.fc45 fedora 836.7 KiB ngtcp2 aarch64 0:1.22.1-3.fc45 fedora 341.1 KiB ngtcp2-crypto-ossl aarch64 0:1.22.1-3.fc45 fedora 67.5 KiB npth aarch64 0:1.8-5.fc45 fedora 93.4 KiB ocaml-srpm-macros noarch 0:11-4.fc45 fedora 1.9 KiB openblas-srpm-macros noarch 0:2-23.fc46 fedora 124.0 B openldap aarch64 0:2.6.15-1.fc46 fedora 765.6 KiB openssl-libs aarch64 1:4.0.3-1.fc46 fedora 5.8 MiB p11-kit aarch64 0:0.26.5-1.fc45 fedora 2.8 MiB p11-kit-trust aarch64 0:0.26.5-1.fc45 fedora 530.1 KiB package-notes-srpm-macros noarch 0:0.20-2.fc45 fedora 1.6 KiB pam-libs aarch64 0:1.7.2-4.fc45 fedora 222.7 KiB pcre2 aarch64 0:10.47-1.fc45.2 fedora 714.4 KiB pcre2-syntax noarch 0:10.47-1.fc45.2 fedora 281.9 KiB perl-srpm-macros noarch 0:1-65.fc45 fedora 861.0 B pkgconf aarch64 0:2.5.1-2.fc45 fedora 116.8 KiB pkgconf-m4 noarch 0:2.5.1-2.fc45 fedora 14.3 KiB pkgconf-pkg-config aarch64 0:2.5.1-2.fc45 fedora 990.0 B policycoreutils aarch64 0:3.11-2.fc45 fedora 1.5 MiB popt aarch64 0:1.19-11.fc45 fedora 144.7 KiB publicsuffix-list-dafsa noarch 0:20260624-2.fc45 fedora 71.3 KiB pyproject-srpm-macros noarch 0:1.23.2-1.fc45 fedora 3.4 KiB python-srpm-macros noarch 0:3.15-2.fc45 fedora 51.6 KiB qt5-srpm-macros noarch 0:5.15.18-3.fc45 fedora 500.0 B qt6-srpm-macros noarch 0:6.11.2-1.fc46 fedora 472.0 B readline aarch64 0:8.3-7.fc46 fedora 563.6 KiB redhat-systemd-presets noarch 0:102-3.fc45 fedora 1.0 KiB redhat-systemd-presets-common noarch 0:102-3.fc45 fedora 16.9 KiB rpm aarch64 0:6.1.0-1.fc46 fedora 3.3 MiB rpm-build-libs aarch64 0:6.1.0-1.fc46 fedora 264.0 KiB rpm-libs aarch64 0:6.1.0-1.fc46 fedora 1.1 MiB rpm-plugin-selinux aarch64 0:6.1.0-1.fc46 fedora 67.9 KiB rpm-sequoia aarch64 0:1.10.3-1.fc46 fedora 2.3 MiB rpm-sign-libs aarch64 0:6.1.0-1.fc46 fedora 67.7 KiB rust-srpm-macros noarch 0:28.5-2.fc45 fedora 5.5 KiB selinux-policy noarch 0:45.21-1.fc46 fedora 32.1 KiB selinux-policy-targeted noarch 0:45.21-1.fc46 fedora 19.0 MiB setup noarch 0:2.15.1-2.fc45 fedora 725.6 KiB sqlite-libs aarch64 0:3.53.4-1.fc45 fedora 1.6 MiB systemd-libs aarch64 0:262-3.fc46 fedora 2.8 MiB systemd-standalone-sysusers aarch64 0:262-3.fc46 fedora 979.3 KiB tpm2-tss aarch64 0:4.2.0-1.fc45 fedora 2.2 MiB tree-sitter-srpm-macros noarch 0:0.4.6-2.fc45 fedora 8.6 KiB util-linux-core aarch64 0:2.42.4-2.fc46 fedora 2.5 MiB xxhash-libs aarch64 0:0.8.4-1.fc46 fedora 85.8 KiB xz-libs aarch64 1:5.8.4-1.fc46 fedora 265.5 KiB zig-srpm-macros noarch 0:1-9.fc45 fedora 1.3 KiB zip aarch64 0:3.0-46.fc45 fedora 762.2 KiB zlib-ng-compat aarch64 0:2.3.3-6.fc45 fedora 133.4 KiB zstd aarch64 0:1.5.7-6.fc45 fedora 562.3 KiB Installing groups: Buildsystem building group Transaction Summary: Installing: 190 packages Total size of inbound packages is 69 MiB. Need to download 69 MiB. After this operation, 253 MiB extra will be used (install 253 MiB, remove 0 B). [ 1/190] bzip2-0:1.0.8-24.fc45.aarch64 100% | 285.3 KiB/s | 52.2 KiB | 00m00s [ 2/190] cpio-0:2.15-10.fc45.aarch64 100% | 1.5 MiB/s | 289.7 KiB | 00m00s [ 3/190] coreutils-0:9.12-1.fc46.aarch 100% | 2.5 MiB/s | 1.2 MiB | 00m00s [ 4/190] bash-0:5.3.20-1.fc46.aarch64 100% | 3.7 MiB/s | 1.8 MiB | 00m00s [ 5/190] diffutils-0:3.12-6.fc45.aarch 100% | 3.1 MiB/s | 392.3 KiB | 00m00s [ 6/190] fedora-release-common-0:46-0. 100% | 298.5 KiB/s | 18.2 KiB | 00m00s [ 7/190] findutils-1:4.11.0-2.fc45.aar 100% | 9.0 MiB/s | 569.9 KiB | 00m00s [ 8/190] glibc-minimal-langpack-0:2.44 100% | 2.2 MiB/s | 137.1 KiB | 00m00s [ 9/190] grep-0:3.12-4.fc45.aarch64 100% | 4.7 MiB/s | 296.0 KiB | 00m00s [ 10/190] gzip-0:1.14-4.fc45.aarch64 100% | 2.8 MiB/s | 173.6 KiB | 00m00s [ 11/190] gawk-0:5.4.1-1.fc45.aarch64 100% | 6.2 MiB/s | 1.1 MiB | 00m00s [ 12/190] info-0:7.3-3.fc45.aarch64 100% | 2.9 MiB/s | 183.9 KiB | 00m00s [ 13/190] patch-0:2.8-6.fc46.aarch64 100% | 1.8 MiB/s | 110.8 KiB | 00m00s [ 14/190] redhat-rpm-config-0:345-4.fc4 100% | 1.3 MiB/s | 78.1 KiB | 00m00s [ 15/190] rpm-build-0:6.1.0-1.fc46.aarc 100% | 2.4 MiB/s | 152.9 KiB | 00m00s [ 16/190] sed-0:4.10-2.fc45.aarch64 100% | 5.0 MiB/s | 319.1 KiB | 00m00s [ 17/190] tar-2:1.35-9.fc45.aarch64 100% | 13.2 MiB/s | 854.2 KiB | 00m00s [ 18/190] unzip-0:6.0-71.fc45.aarch64 100% | 3.1 MiB/s | 199.1 KiB | 00m00s [ 19/190] shadow-utils-2:4.20.0-1.fc45. 100% | 11.4 MiB/s | 1.4 MiB | 00m00s [ 20/190] util-linux-0:2.42.4-2.fc46.aa 100% | 19.4 MiB/s | 1.2 MiB | 00m00s [ 21/190] which-0:2.25-2.fc45.aarch64 100% | 683.0 KiB/s | 41.7 KiB | 00m00s [ 22/190] xz-1:5.8.4-1.fc46.aarch64 100% | 10.1 MiB/s | 653.9 KiB | 00m00s [ 23/190] filesystem-0:3.18-59.fc45.aar 100% | 27.9 MiB/s | 1.8 MiB | 00m00s [ 24/190] ncurses-libs-0:6.6-3.fc45.aar 100% | 5.1 MiB/s | 324.6 KiB | 00m00s [ 25/190] bzip2-libs-0:1.0.8-24.fc45.aa 100% | 675.6 KiB/s | 41.2 KiB | 00m00s [ 26/190] glibc-0:2.44.9000-4.fc46.aarc 100% | 16.5 MiB/s | 2.1 MiB | 00m00s [ 27/190] coreutils-common-0:9.12-1.fc4 100% | 33.8 MiB/s | 2.2 MiB | 00m00s [ 28/190] gmp-1:6.3.0-6.fc45.aarch64 100% | 4.3 MiB/s | 270.7 KiB | 00m00s [ 29/190] libacl-0:2.4.0-2.fc45.aarch64 100% | 437.8 KiB/s | 26.7 KiB | 00m00s [ 30/190] libattr-0:2.6.0-2.fc45.aarch6 100% | 292.1 KiB/s | 17.8 KiB | 00m00s [ 31/190] libcap-0:2.78-2.fc45.aarch64 100% | 1.4 MiB/s | 88.4 KiB | 00m00s [ 32/190] libselinux-0:3.11-5.fc46.aarc 100% | 1.6 MiB/s | 100.0 KiB | 00m00s [ 33/190] openssl-libs-1:4.0.3-1.fc46.a 100% | 32.9 MiB/s | 2.1 MiB | 00m00s [ 34/190] systemd-libs-0:262-3.fc46.aar 100% | 13.2 MiB/s | 880.4 KiB | 00m00s [ 35/190] fedora-repos-0:46-0.3.noarch 100% | 156.7 KiB/s | 9.6 KiB | 00m00s [ 36/190] redhat-systemd-presets-0:102- 100% | 140.0 KiB/s | 8.5 KiB | 00m00s [ 37/190] mpfr-0:4.2.2-4.fc45.aarch64 100% | 5.0 MiB/s | 319.4 KiB | 00m00s [ 38/190] readline-0:8.3-7.fc46.aarch64 100% | 3.5 MiB/s | 220.9 KiB | 00m00s [ 39/190] glibc-common-0:2.44.9000-4.fc 100% | 6.5 MiB/s | 415.5 KiB | 00m00s [ 40/190] pcre2-0:10.47-1.fc45.2.aarch6 100% | 4.0 MiB/s | 250.2 KiB | 00m00s [ 41/190] ed-0:1.22.6-1.fc46.aarch64 100% | 1.3 MiB/s | 84.0 KiB | 00m00s [ 42/190] R-srpm-macros-0:1.3.7-3.fc45. 100% | 182.8 KiB/s | 11.1 KiB | 00m00s [ 43/190] ansible-srpm-macros-0:1-22.fc 100% | 325.3 KiB/s | 19.8 KiB | 00m00s [ 44/190] build-reproducibility-srpm-ma 100% | 177.6 KiB/s | 10.8 KiB | 00m00s [ 45/190] cmake-srpm-macros-0:4.3.0-5.f 100% | 169.5 KiB/s | 10.3 KiB | 00m00s [ 46/190] dwz-0:0.17-3.fc45.aarch64 100% | 2.1 MiB/s | 132.9 KiB | 00m00s [ 47/190] efi-srpm-macros-0:6-9.fc45.no 100% | 351.6 KiB/s | 21.4 KiB | 00m00s [ 48/190] erlang-srpm-macros-0:0.4.0-1. 100% | 163.6 KiB/s | 10.0 KiB | 00m00s [ 49/190] file-0:5.48-3.fc46.aarch64 100% | 831.9 KiB/s | 50.7 KiB | 00m00s [ 50/190] filesystem-srpm-macros-0:3.18 100% | 432.9 KiB/s | 26.4 KiB | 00m00s [ 51/190] fonts-srpm-macros-1:5.0.0-4.f 100% | 445.1 KiB/s | 27.2 KiB | 00m00s [ 52/190] forge-srpm-macros-0:0.4.0-5.f 100% | 323.4 KiB/s | 19.7 KiB | 00m00s [ 53/190] fpc-srpm-macros-0:1.3-17.fc45 100% | 127.3 KiB/s | 7.8 KiB | 00m00s [ 54/190] gap-srpm-macros-0:2-3.fc45.no 100% | 152.6 KiB/s | 9.3 KiB | 00m00s [ 55/190] ghc-srpm-macros-0:1.10-2.fc45 100% | 139.2 KiB/s | 8.5 KiB | 00m00s [ 56/190] gnat-srpm-macros-0:7-3.fc45.n 100% | 140.5 KiB/s | 8.6 KiB | 00m00s [ 57/190] gnome-srpm-macros-0:1.0-2.fc4 100% | 144.7 KiB/s | 8.8 KiB | 00m00s [ 58/190] go-srpm-macros-0:3.8.0-3.fc45 100% | 455.8 KiB/s | 27.8 KiB | 00m00s [ 59/190] java-srpm-macros-0:1-9.fc45.n 100% | 135.8 KiB/s | 8.3 KiB | 00m00s [ 60/190] kernel-srpm-macros-0:1.0-30.f 100% | 135.9 KiB/s | 8.3 KiB | 00m00s [ 61/190] lua-srpm-macros-0:1-18.fc45.n 100% | 142.4 KiB/s | 8.7 KiB | 00m00s [ 62/190] meson-srpm-macros-0:1.12.1-2. 100% | 193.6 KiB/s | 11.8 KiB | 00m00s [ 63/190] ocaml-srpm-macros-0:11-4.fc45 100% | 146.7 KiB/s | 9.0 KiB | 00m00s [ 64/190] openblas-srpm-macros-0:2-23.f 100% | 123.8 KiB/s | 7.5 KiB | 00m00s [ 65/190] package-notes-srpm-macros-0:0 100% | 172.1 KiB/s | 10.5 KiB | 00m00s [ 66/190] perl-srpm-macros-0:1-65.fc45. 100% | 136.9 KiB/s | 8.4 KiB | 00m00s [ 67/190] pyproject-srpm-macros-0:1.23. 100% | 255.1 KiB/s | 15.6 KiB | 00m00s [ 68/190] python-srpm-macros-0:3.15-2.f 100% | 391.0 KiB/s | 23.9 KiB | 00m00s [ 69/190] qt5-srpm-macros-0:5.15.18-3.f 100% | 132.2 KiB/s | 8.1 KiB | 00m00s [ 70/190] qt6-srpm-macros-0:6.11.2-1.fc 100% | 148.8 KiB/s | 9.1 KiB | 00m00s [ 71/190] rpm-0:6.1.0-1.fc46.aarch64 100% | 9.0 MiB/s | 573.1 KiB | 00m00s [ 72/190] rust-srpm-macros-0:28.5-2.fc4 100% | 186.4 KiB/s | 11.4 KiB | 00m00s [ 73/190] tree-sitter-srpm-macros-0:0.4 100% | 229.5 KiB/s | 14.0 KiB | 00m00s [ 74/190] zig-srpm-macros-0:1-9.fc45.no 100% | 144.5 KiB/s | 8.8 KiB | 00m00s [ 75/190] zip-0:3.0-46.fc45.aarch64 100% | 4.2 MiB/s | 265.9 KiB | 00m00s [ 76/190] debugedit-0:5.3-3.fc45.aarch6 100% | 1.4 MiB/s | 86.7 KiB | 00m00s [ 77/190] elfutils-0:0.196-1.fc46.aarch 100% | 10.0 MiB/s | 642.3 KiB | 00m00s [ 78/190] elfutils-libelf-0:0.196-1.fc4 100% | 3.8 MiB/s | 235.6 KiB | 00m00s [ 79/190] binutils-0:2.47.50-12.fc46.aa 100% | 28.1 MiB/s | 5.3 MiB | 00m00s [ 80/190] libarchive-0:3.8.9-2.fc46.aar 100% | 6.3 MiB/s | 418.3 KiB | 00m00s [ 81/190] libgcc-0:16.2.1-2.fc46.1.aarc 100% | 1.9 MiB/s | 118.1 KiB | 00m00s [ 82/190] pkgconf-pkg-config-0:2.5.1-2. 100% | 155.6 KiB/s | 9.5 KiB | 00m00s [ 83/190] libstdc++-0:16.2.1-2.fc46.1.a 100% | 14.2 MiB/s | 918.1 KiB | 00m00s [ 84/190] popt-0:1.19-11.fc45.aarch64 100% | 1.0 MiB/s | 65.1 KiB | 00m00s [ 85/190] rpm-build-libs-0:6.1.0-1.fc46 100% | 1.9 MiB/s | 120.6 KiB | 00m00s [ 86/190] rpm-libs-0:6.1.0-1.fc46.aarch 100% | 6.8 MiB/s | 429.5 KiB | 00m00s [ 87/190] zstd-0:1.5.7-6.fc45.aarch64 100% | 2.9 MiB/s | 183.0 KiB | 00m00s [ 88/190] audit-libs-0:4.2.1-2.fc45.aar 100% | 2.3 MiB/s | 142.0 KiB | 00m00s [ 89/190] libeconf-0:0.7.9-4.fc45.aarch 100% | 570.2 KiB/s | 34.8 KiB | 00m00s [ 90/190] libsemanage-0:3.11-4.fc46.aar 100% | 2.0 MiB/s | 122.4 KiB | 00m00s [ 91/190] libxcrypt-0:4.5.2-4.fc45.aarc 100% | 2.0 MiB/s | 125.2 KiB | 00m00s [ 92/190] pam-libs-0:1.7.2-4.fc45.aarch 100% | 931.0 KiB/s | 56.8 KiB | 00m00s [ 93/190] setup-0:2.15.1-2.fc45.noarch 100% | 2.5 MiB/s | 157.6 KiB | 00m00s [ 94/190] libblkid-0:2.42.4-2.fc46.aarc 100% | 2.0 MiB/s | 126.5 KiB | 00m00s [ 95/190] libcap-ng-0:0.9.6-1.fc46.aarc 100% | 575.8 KiB/s | 35.1 KiB | 00m00s [ 96/190] libfdisk-0:2.42.4-2.fc46.aarc 100% | 2.5 MiB/s | 156.2 KiB | 00m00s [ 97/190] liblastlog2-0:2.42.4-2.fc46.a 100% | 408.0 KiB/s | 24.9 KiB | 00m00s [ 98/190] libmount-0:2.42.4-2.fc46.aarc 100% | 2.7 MiB/s | 166.9 KiB | 00m00s [ 99/190] libsmartcols-0:2.42.4-2.fc46. 100% | 1.4 MiB/s | 85.0 KiB | 00m00s [100/190] libuuid-0:2.42.4-2.fc46.aarch 100% | 443.4 KiB/s | 27.0 KiB | 00m00s [101/190] util-linux-core-0:2.42.4-2.fc 100% | 9.0 MiB/s | 568.7 KiB | 00m00s [102/190] zlib-ng-compat-0:2.3.3-6.fc45 100% | 1.2 MiB/s | 72.1 KiB | 00m00s [103/190] xz-libs-1:5.8.4-1.fc46.aarch6 100% | 1.8 MiB/s | 111.4 KiB | 00m00s [104/190] glibc-gconv-extra-0:2.44.9000 100% | 27.6 MiB/s | 1.8 MiB | 00m00s [105/190] ncurses-base-0:6.6-3.fc45.noa 100% | 1.4 MiB/s | 88.1 KiB | 00m00s [106/190] gnulib-l10n-0:20241231-4.fc45 100% | 2.4 MiB/s | 150.4 KiB | 00m00s [107/190] libsepol-0:3.11-2.fc45.aarch6 100% | 5.1 MiB/s | 326.0 KiB | 00m00s [108/190] ca-certificates-0:2026.2.90_v 100% | 15.0 MiB/s | 964.7 KiB | 00m00s [109/190] crypto-policies-0:20260713-2. 100% | 1.6 MiB/s | 97.5 KiB | 00m00s [110/190] fips-provider-0:1.5.3-1.fc46. 100% | 23.0 MiB/s | 1.5 MiB | 00m00s [111/190] fedora-gpg-keys-0:46-0.3.noar 100% | 2.3 MiB/s | 143.8 KiB | 00m00s [112/190] fedora-repos-rawhide-0:46-0.3 100% | 147.9 KiB/s | 9.0 KiB | 00m00s [113/190] redhat-systemd-presets-common 100% | 216.9 KiB/s | 13.2 KiB | 00m00s [114/190] pcre2-syntax-0:10.47-1.fc45.2 100% | 2.6 MiB/s | 165.1 KiB | 00m00s [115/190] add-determinism-0:0.7.3-3.fc4 100% | 12.2 MiB/s | 788.1 KiB | 00m00s [116/190] linkdupes-0:0.7.3-3.fc45.aarc 100% | 5.1 MiB/s | 322.6 KiB | 00m00s [117/190] file-libs-0:5.48-3.fc46.aarch 100% | 13.6 MiB/s | 878.1 KiB | 00m00s [118/190] curl-0:8.23.0~rc2-1.fc46.aarc 100% | 3.8 MiB/s | 238.9 KiB | 00m00s [119/190] alternatives-0:1.33-6.fc45.aa 100% | 635.2 KiB/s | 38.7 KiB | 00m00s [120/190] elfutils-debuginfod-client-0: 100% | 760.3 KiB/s | 46.4 KiB | 00m00s [121/190] jansson-0:2.14-5.fc45.aarch64 100% | 761.0 KiB/s | 46.4 KiB | 00m00s [122/190] libzstd-0:1.5.7-6.fc45.aarch6 100% | 5.2 MiB/s | 329.8 KiB | 00m00s [123/190] elfutils-libs-0:0.196-1.fc46. 100% | 4.2 MiB/s | 265.8 KiB | 00m00s [124/190] json-c-0:0.18-9.fc45.aarch64 100% | 739.3 KiB/s | 45.1 KiB | 00m00s [125/190] libpfm-0:4.13.0-23.fc45.aarch 100% | 870.4 KiB/s | 53.1 KiB | 00m00s [126/190] libxml2-0:2.15.4-1.fc46.aarch 100% | 10.0 MiB/s | 637.2 KiB | 00m00s [127/190] lz4-libs-0:1.10.0-5.fc45.aarc 100% | 1.3 MiB/s | 80.2 KiB | 00m00s [128/190] pkgconf-0:2.5.1-2.fc45.aarch6 100% | 793.9 KiB/s | 48.4 KiB | 00m00s [129/190] pkgconf-m4-0:2.5.1-2.fc45.noa 100% | 226.4 KiB/s | 13.8 KiB | 00m00s [130/190] libgomp-0:16.2.1-2.fc46.1.aar 100% | 6.0 MiB/s | 380.8 KiB | 00m00s [131/190] lua-libs-0:5.5.1-2.fc46.aarch 100% | 2.2 MiB/s | 137.7 KiB | 00m00s [132/190] rpm-sign-libs-0:6.1.0-1.fc46. 100% | 428.0 KiB/s | 26.1 KiB | 00m00s [133/190] rpm-sequoia-0:1.10.3-1.fc46.a 100% | 13.7 MiB/s | 885.3 KiB | 00m00s [134/190] sqlite-libs-0:3.53.4-1.fc45.a 100% | 11.9 MiB/s | 764.7 KiB | 00m00s [135/190] libffi-0:3.8.0-1.fc46.aarch64 100% | 689.9 KiB/s | 42.1 KiB | 00m00s [136/190] p11-kit-0:0.26.5-1.fc45.aarch 100% | 8.4 MiB/s | 534.6 KiB | 00m00s [137/190] p11-kit-trust-0:0.26.5-1.fc45 100% | 2.2 MiB/s | 139.5 KiB | 00m00s [138/190] libpkgconf-0:2.5.1-2.fc45.aar 100% | 667.2 KiB/s | 40.7 KiB | 00m00s [139/190] gnupg2-0:2.4.9-18.fc45.aarch6 100% | 25.2 MiB/s | 1.6 MiB | 00m00s [140/190] ima-evm-utils-libs-0:1.6.2-12 100% | 485.9 KiB/s | 29.6 KiB | 00m00s [141/190] libfsverity-0:1.7-4.fc45.aarc 100% | 304.0 KiB/s | 18.5 KiB | 00m00s [142/190] libtasn1-0:4.21.0-2.fc45.aarc 100% | 1.2 MiB/s | 73.4 KiB | 00m00s [143/190] gpgverify-0:2.2-5.fc45.noarch 100% | 185.4 KiB/s | 11.3 KiB | 00m00s [144/190] gnupg2-dirmngr-0:2.4.9-18.fc4 100% | 4.2 MiB/s | 263.1 KiB | 00m00s [145/190] gnupg2-gpg-agent-0:2.4.9-18.f 100% | 4.3 MiB/s | 266.0 KiB | 00m00s [146/190] gnupg2-gpgconf-0:2.4.9-18.fc4 100% | 1.8 MiB/s | 113.7 KiB | 00m00s [147/190] gnupg2-keyboxd-0:2.4.9-18.fc4 100% | 1.5 MiB/s | 90.7 KiB | 00m00s [148/190] gnupg2-verify-0:2.4.9-18.fc45 100% | 2.6 MiB/s | 163.1 KiB | 00m00s [149/190] libassuan-0:2.5.7-6.fc45.aarc 100% | 1.1 MiB/s | 66.7 KiB | 00m00s [150/190] libgcrypt-0:1.12.4-1.fc46.aar 100% | 8.5 MiB/s | 539.5 KiB | 00m00s [151/190] libgpg-error-0:1.61-2.fc45.aa 100% | 3.9 MiB/s | 248.2 KiB | 00m00s [152/190] npth-0:1.8-5.fc45.aarch64 100% | 406.5 KiB/s | 24.8 KiB | 00m00s [153/190] tpm2-tss-0:4.2.0-1.fc45.aarch 100% | 6.5 MiB/s | 413.5 KiB | 00m00s [154/190] gnutls-0:3.8.13-5.fc46.aarch6 100% | 20.0 MiB/s | 1.3 MiB | 00m00s [155/190] libksba-0:1.8.1-1.fc46.aarch6 100% | 2.5 MiB/s | 162.3 KiB | 00m00s [156/190] openldap-0:2.6.15-1.fc46.aarc 100% | 4.0 MiB/s | 252.6 KiB | 00m00s [157/190] libusb1-0:1.0.30-2.fc45.aarch 100% | 1.3 MiB/s | 79.2 KiB | 00m00s [158/190] libidn2-0:2.3.8-4.fc45.aarch6 100% | 2.7 MiB/s | 174.3 KiB | 00m00s [159/190] libunistring-0:1.1-12.fc45.aa 100% | 8.5 MiB/s | 538.4 KiB | 00m00s [160/190] nettle-0:4.0-5.fc45.aarch64 100% | 6.7 MiB/s | 428.3 KiB | 00m00s [161/190] cyrus-sasl-lib-0:2.1.28-37.fc 100% | 11.9 MiB/s | 766.6 KiB | 00m00s [162/190] libevent-0:2.1.13-1.fc46.aarc 100% | 4.3 MiB/s | 272.8 KiB | 00m00s [163/190] libtool-ltdl-0:2.6.2-1.fc46.a 100% | 583.4 KiB/s | 35.6 KiB | 00m00s [164/190] gdbm-libs-1:1.26-1.fc46.aarch 100% | 945.9 KiB/s | 57.7 KiB | 00m00s [165/190] fedora-release-0:46-0.1.noarc 100% | 194.9 KiB/s | 11.9 KiB | 00m00s [166/190] systemd-standalone-sysusers-0 100% | 6.2 MiB/s | 395.8 KiB | 00m00s [167/190] xxhash-libs-0:0.8.4-1.fc46.aa 100% | 557.9 KiB/s | 34.0 KiB | 00m00s [168/190] fedora-release-identity-basic 100% | 207.5 KiB/s | 12.7 KiB | 00m00s [169/190] gdb-minimal-0:17.2-6.fc46.aar 100% | 33.7 MiB/s | 4.3 MiB | 00m00s [170/190] libcurl-0:8.23.0~rc2-1.fc46.a 100% | 7.3 MiB/s | 463.3 KiB | 00m00s [171/190] krb5-libs-0:1.22.2-9.fc45.aar 100% | 12.0 MiB/s | 760.6 KiB | 00m00s [172/190] libbrotli-0:1.2.0-6.fc45.aarc 100% | 5.5 MiB/s | 348.8 KiB | 00m00s [173/190] libnghttp2-0:1.69.0-6.fc46.aa 100% | 1.2 MiB/s | 74.7 KiB | 00m00s [174/190] libnghttp3-0:1.18.0-1.fc45.aa 100% | 1.1 MiB/s | 70.1 KiB | 00m00s [175/190] libpsl-0:0.23.3-1.fc46.aarch6 100% | 1.1 MiB/s | 67.4 KiB | 00m00s [176/190] libssh-0:0.12.2-1.fc45.aarch6 100% | 4.4 MiB/s | 277.2 KiB | 00m00s [177/190] ngtcp2-0:1.22.1-3.fc45.aarch6 100% | 2.4 MiB/s | 147.5 KiB | 00m00s [178/190] ngtcp2-crypto-ossl-0:1.22.1-3 100% | 428.8 KiB/s | 26.2 KiB | 00m00s [179/190] keyutils-libs-0:1.6.3-8.fc45. 100% | 517.0 KiB/s | 31.5 KiB | 00m00s [180/190] libcom_err-0:1.47.4-2.fc45.aa 100% | 434.6 KiB/s | 26.5 KiB | 00m00s [181/190] libverto-0:0.3.2-13.fc45.aarc 100% | 335.0 KiB/s | 20.4 KiB | 00m00s [182/190] publicsuffix-list-dafsa-0:202 100% | 1.0 MiB/s | 61.1 KiB | 00m00s [183/190] libfido2-0:1.17.0-6.fc46.aarc 100% | 1.6 MiB/s | 99.2 KiB | 00m00s [184/190] libssh-config-0:0.12.2-1.fc45 100% | 146.5 KiB/s | 8.9 KiB | 00m00s [185/190] libcbor-0:0.14.0-3.fc45.aarch 100% | 575.8 KiB/s | 35.1 KiB | 00m00s [186/190] policycoreutils-0:3.11-2.fc45 100% | 4.1 MiB/s | 262.3 KiB | 00m00s [187/190] selinux-policy-0:45.21-1.fc46 100% | 688.0 KiB/s | 42.0 KiB | 00m00s [188/190] libselinux-utils-0:3.11-5.fc4 100% | 2.0 MiB/s | 127.0 KiB | 00m00s [189/190] rpm-plugin-selinux-0:6.1.0-1. 100% | 294.3 KiB/s | 18.0 KiB | 00m00s [190/190] selinux-policy-targeted-0:45. 100% | 35.0 MiB/s | 6.8 MiB | 00m00s -------------------------------------------------------------------------------- [190/190] Total 100% | 14.8 MiB/s | 68.6 MiB | 00m05s Running transaction Importing OpenPGP key 0x91211FCE: UserID : "Fedora (46) " Fingerprint: D924B10D3E810DABDD8B56B596E7E91491211FCE From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-46-primary The key was successfully imported. Importing OpenPGP key 0x91211FCE: UserID : "Fedora (46) " Fingerprint: D924B10D3E810DABDD8B56B596E7E91491211FCE From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-46-primary The key was successfully imported. Importing OpenPGP key 0xF577861E: UserID : "Fedora (45) " Fingerprint: 4F50A6114CD5C6976A7F1179655A4B02F577861E From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-45-primary The key was successfully imported. Importing OpenPGP key 0x9488FB64: UserID : "Fedora (47) " Fingerprint: B2E766FA50CA6FA2D5ED06FC09D879E09488FB64 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-47-primary The key was successfully imported. [ 1/192] Verify package files 100% | 742.0 B/s | 190.0 B | 00m00s >>> Running %pretrans scriptlet: filesystem-0:3.18-59.fc45.aarch64 >>> Finished %pretrans scriptlet: filesystem-0:3.18-59.fc45.aarch64 >>> [RPM] failed to open /var/lib/mock/fedora-rawhide-aarch64-1791482221.889122/root/etc/group for id/name lookup: No such file or directory [ 2/192] Prepare transaction 100% | 2.2 KiB/s | 190.0 B | 00m00s [ 3/192] Installing libgcc-0:16.2.1-2. 100% | 109.4 MiB/s | 224.0 KiB | 00m00s [ 4/192] Installing redhat-systemd-pre 100% | 0.0 B/s | 1.5 KiB | 00m00s [ 5/192] Installing redhat-systemd-pre 100% | 0.0 B/s | 18.1 KiB | 00m00s [ 6/192] Installing libssh-config-0:0. 100% | 0.0 B/s | 816.0 B | 00m00s [ 7/192] Installing publicsuffix-list- 100% | 70.3 MiB/s | 72.0 KiB | 00m00s [ 8/192] Installing fedora-release-ide 100% | 898.4 KiB/s | 920.0 B | 00m00s [ 9/192] Installing fedora-gpg-keys-0: 100% | 29.6 MiB/s | 181.7 KiB | 00m00s [ 10/192] Installing fedora-repos-rawhi 100% | 0.0 B/s | 2.5 KiB | 00m00s [ 11/192] Installing fedora-repos-0:46- 100% | 0.0 B/s | 5.9 KiB | 00m00s [ 12/192] Installing fedora-release-com 100% | 7.8 MiB/s | 8.0 KiB | 00m00s [ 13/192] Installing fedora-release-0:4 100% | 20.2 KiB/s | 124.0 B | 00m00s >>> Running sysusers scriptlet: setup-0:2.15.1-2.fc45.noarch >>> Finished sysusers scriptlet: setup-0:2.15.1-2.fc45.noarch >>> Scriptlet output: >>> Creating group 'adm' with GID 4. >>> Creating group 'audio' with GID 63. >>> Creating group 'cdrom' with GID 11. >>> Creating group 'clock' with GID 103. >>> Creating group 'dialout' with GID 18. >>> Creating group 'disk' with GID 6. >>> Creating group 'floppy' with GID 19. >>> Creating group 'ftp' with GID 50. >>> Creating group 'games' with GID 20. >>> Creating group 'input' with GID 104. >>> Creating group 'kmem' with GID 9. >>> Creating group 'kvm' with GID 36. >>> Creating group 'lock' with GID 54. >>> Creating group 'lp' with GID 7. >>> Creating group 'mail' with GID 12. >>> Creating group 'man' with GID 15. >>> Creating group 'mem' with GID 8. >>> Creating group 'nobody' with GID 65534. >>> Creating group 'render' with GID 105. >>> Creating group 'root' with GID 0. >>> Creating group 'sgx' with GID 106. >>> Creating group 'sys' with GID 3. >>> Creating group 'tape' with GID 33. >>> Creating group 'tty' with GID 5. >>> Creating group 'users' with GID 100. >>> Creating group 'utmp' with GID 22. >>> Creating group 'video' with GID 39. >>> Creating group 'wheel' with GID 10. >>> Creating user 'adm' (adm) with UID 3 and GID 4. >>> Creating group 'bin' with GID 1. >>> Creating user 'bin' (bin) with UID 1 and GID 1. >>> Creating group 'daemon' with GID 2. >>> Creating user 'daemon' (daemon) with UID 2 and GID 2. >>> Creating user 'ftp' (FTP User) with UID 14 and GID 50. >>> Creating user 'games' (games) with UID 12 and GID 100. >>> Creating user 'halt' (halt) with UID 7 and GID 0. >>> Creating user 'lp' (lp) with UID 4 and GID 7. >>> Creating user 'mail' (mail) with UID 8 and GID 12. >>> Creating user 'nobody' (Kernel Overflow User) with UID 65534 and GID 65534. >>> Creating user 'operator' (operator) with UID 11 and GID 0. >>> Creating user 'root' (Super User) with UID 0 and GID 0. >>> Creating user 'shutdown' (shutdown) with UID 6 and GID 0. >>> Creating user 'sync' (sync) with UID 5 and GID 0. >>> [ 14/192] Installing setup-0:2.15.1-2.f 100% | 29.8 MiB/s | 731.3 KiB | 00m00s >>> [RPM] /etc/hosts created as /etc/hosts.rpmnew [ 15/192] Installing filesystem-0:3.18- 100% | 1.7 MiB/s | 253.6 KiB | 00m00s [ 16/192] Installing pkgconf-m4-0:2.5.1 100% | 14.4 MiB/s | 14.7 KiB | 00m00s [ 17/192] Installing pcre2-syntax-0:10. 100% | 138.8 MiB/s | 284.3 KiB | 00m00s [ 18/192] Installing gnulib-l10n-0:2024 100% | 129.3 MiB/s | 661.9 KiB | 00m00s [ 19/192] Installing coreutils-common-0 100% | 330.3 MiB/s | 11.6 MiB | 00m00s [ 20/192] Installing ncurses-base-0:6.6 100% | 57.8 MiB/s | 355.3 KiB | 00m00s [ 21/192] Installing bash-0:5.3.20-1.fc 100% | 179.4 MiB/s | 8.4 MiB | 00m00s [ 22/192] Installing glibc-common-0:2.4 100% | 44.4 MiB/s | 1.3 MiB | 00m00s [ 23/192] Installing glibc-gconv-extra- 100% | 389.2 MiB/s | 18.7 MiB | 00m00s [ 24/192] Installing glibc-0:2.44.9000- 100% | 131.8 MiB/s | 6.6 MiB | 00m00s [ 25/192] Installing ncurses-libs-0:6.6 100% | 207.6 MiB/s | 1.2 MiB | 00m00s [ 26/192] Installing glibc-minimal-lang 100% | 0.0 B/s | 124.0 B | 00m00s [ 27/192] Installing zlib-ng-compat-0:2 100% | 131.1 MiB/s | 134.3 KiB | 00m00s [ 28/192] Installing bzip2-libs-0:1.0.8 100% | 71.9 MiB/s | 73.6 KiB | 00m00s [ 29/192] Installing libgpg-error-0:1.6 100% | 36.3 MiB/s | 1.0 MiB | 00m00s [ 30/192] Installing readline-0:8.3-7.f 100% | 184.1 MiB/s | 565.7 KiB | 00m00s [ 31/192] Installing libstdc++-0:16.2.1 100% | 330.2 MiB/s | 3.0 MiB | 00m00s [ 32/192] Installing libzstd-0:1.5.7-6. 100% | 280.5 MiB/s | 861.6 KiB | 00m00s [ 33/192] Installing elfutils-libelf-0: 100% | 364.6 MiB/s | 1.5 MiB | 00m00s [ 34/192] Installing libassuan-0:2.5.7- 100% | 212.6 MiB/s | 217.7 KiB | 00m00s [ 35/192] Installing libgcrypt-0:1.12.4 100% | 240.7 MiB/s | 1.2 MiB | 00m00s [ 36/192] Installing gmp-1:6.3.0-6.fc45 100% | 214.9 MiB/s | 660.1 KiB | 00m00s [ 37/192] Installing libacl-0:2.4.0-2.f 100% | 67.1 MiB/s | 68.8 KiB | 00m00s [ 38/192] Installing systemd-libs-0:262 100% | 309.0 MiB/s | 2.8 MiB | 00m00s [ 39/192] Installing libuuid-0:2.42.4-2 100% | 68.8 MiB/s | 70.4 KiB | 00m00s [ 40/192] Installing popt-0:1.19-11.fc4 100% | 49.3 MiB/s | 151.3 KiB | 00m00s [ 41/192] Installing xz-libs-1:5.8.4-1. 100% | 260.3 MiB/s | 266.6 KiB | 00m00s [ 42/192] Installing sqlite-libs-0:3.53 100% | 261.4 MiB/s | 1.6 MiB | 00m00s [ 43/192] Installing npth-0:1.8-5.fc45. 100% | 92.3 MiB/s | 94.5 KiB | 00m00s [ 44/192] Installing elfutils-libs-0:0. 100% | 243.7 MiB/s | 748.5 KiB | 00m00s [ 45/192] Installing libblkid-0:2.42.4- 100% | 142.2 MiB/s | 291.3 KiB | 00m00s [ 46/192] Installing libsepol-0:3.11-2. 100% | 264.0 MiB/s | 810.9 KiB | 00m00s [ 47/192] Installing gnupg2-gpgconf-0:2 100% | 13.2 MiB/s | 323.9 KiB | 00m00s [ 48/192] Installing pcre2-0:10.47-1.fc 100% | 233.0 MiB/s | 715.8 KiB | 00m00s [ 49/192] Installing libselinux-0:3.11- 100% | 130.1 MiB/s | 266.5 KiB | 00m00s [ 50/192] Installing grep-0:3.12-4.fc45 100% | 37.1 MiB/s | 1.0 MiB | 00m00s [ 51/192] Installing sed-0:4.10-2.fc45. 100% | 30.9 MiB/s | 886.9 KiB | 00m00s [ 52/192] Installing findutils-1:4.11.0 100% | 65.0 MiB/s | 2.0 MiB | 00m00s [ 53/192] Installing libxcrypt-0:4.5.2- 100% | 134.7 MiB/s | 275.9 KiB | 00m00s [ 54/192] Installing json-c-0:0.18-9.fc 100% | 136.5 MiB/s | 139.8 KiB | 00m00s [ 55/192] Installing libtasn1-0:4.21.0- 100% | 217.3 MiB/s | 222.5 KiB | 00m00s [ 56/192] Installing libunistring-0:1.1 100% | 291.0 MiB/s | 1.7 MiB | 00m00s [ 57/192] Installing libidn2-0:2.3.8-4. 100% | 61.5 MiB/s | 566.6 KiB | 00m00s [ 58/192] Installing crypto-policies-0: 100% | 22.3 MiB/s | 159.5 KiB | 00m00s [ 59/192] Installing xz-1:5.8.4-1.fc46. 100% | 47.0 MiB/s | 1.5 MiB | 00m00s [ 60/192] Installing libmount-0:2.42.4- 100% | 205.8 MiB/s | 421.5 KiB | 00m00s [ 61/192] Installing gnupg2-verify-0:2. 100% | 14.9 MiB/s | 365.7 KiB | 00m00s [ 62/192] Installing mpfr-0:4.2.2-4.fc4 100% | 184.8 MiB/s | 757.1 KiB | 00m00s [ 63/192] Installing gawk-0:5.4.1-1.fc4 100% | 91.4 MiB/s | 2.9 MiB | 00m00s [ 64/192] Installing dwz-0:0.17-3.fc45. 100% | 13.2 MiB/s | 324.0 KiB | 00m00s [ 65/192] Installing libksba-0:1.8.1-1. 100% | 200.3 MiB/s | 410.3 KiB | 00m00s [ 66/192] Installing unzip-0:6.0-71.fc4 100% | 18.5 MiB/s | 473.4 KiB | 00m00s [ 67/192] Installing file-libs-0:5.48-3 100% | 618.0 MiB/s | 12.4 MiB | 00m00s [ 68/192] Installing file-0:5.48-3.fc46 100% | 5.8 MiB/s | 143.4 KiB | 00m00s [ 69/192] Installing diffutils-0:3.12-6 100% | 56.0 MiB/s | 1.6 MiB | 00m00s [ 70/192] Installing libattr-0:2.6.0-2. 100% | 67.7 MiB/s | 69.3 KiB | 00m00s [ 71/192] Installing libeconf-0:0.7.9-4 100% | 80.6 MiB/s | 82.5 KiB | 00m00s [ 72/192] Installing libcap-ng-0:0.9.6- 100% | 159.0 MiB/s | 162.8 KiB | 00m00s [ 73/192] Installing audit-libs-0:4.2.1 100% | 238.9 MiB/s | 489.3 KiB | 00m00s [ 74/192] Installing pam-libs-0:1.7.2-4 100% | 219.8 MiB/s | 225.1 KiB | 00m00s [ 75/192] Installing libcap-0:2.78-2.fc 100% | 20.1 MiB/s | 513.5 KiB | 00m00s [ 76/192] Installing libsemanage-0:3.11 100% | 176.8 MiB/s | 362.0 KiB | 00m00s [ 77/192] Installing libsmartcols-0:2.4 100% | 220.1 MiB/s | 225.4 KiB | 00m00s [ 78/192] Installing alternatives-0:1.3 100% | 3.9 MiB/s | 91.7 KiB | 00m00s [ 79/192] Installing lua-libs-0:5.5.1-2 100% | 161.9 MiB/s | 331.5 KiB | 00m00s [ 80/192] Installing libffi-0:3.8.0-1.f 100% | 157.2 MiB/s | 161.0 KiB | 00m00s [ 81/192] Installing p11-kit-0:0.26.5-1 100% | 82.3 MiB/s | 2.8 MiB | 00m00s [ 82/192] Installing p11-kit-trust-0:0. 100% | 17.9 MiB/s | 531.9 KiB | 00m00s [ 83/192] Installing ngtcp2-0:1.22.1-3. 100% | 167.3 MiB/s | 342.7 KiB | 00m00s [ 84/192] Installing util-linux-core-0: 100% | 76.8 MiB/s | 2.5 MiB | 00m00s [ 85/192] Installing liblastlog2-0:2.42 100% | 27.3 MiB/s | 139.8 KiB | 00m00s [ 86/192] Installing zip-0:3.0-46.fc45. 100% | 28.8 MiB/s | 766.1 KiB | 00m00s [ 87/192] Installing gnupg2-keyboxd-0:2 100% | 45.8 MiB/s | 234.5 KiB | 00m00s [ 88/192] Installing libpsl-0:0.23.3-1. 100% | 130.4 MiB/s | 133.6 KiB | 00m00s [ 89/192] Installing tar-2:1.35-9.fc45. 100% | 88.4 MiB/s | 3.0 MiB | 00m00s [ 90/192] Installing linkdupes-0:0.7.3- 100% | 26.8 MiB/s | 712.4 KiB | 00m00s [ 91/192] Installing libselinux-utils-0 100% | 48.5 MiB/s | 1.4 MiB | 00m00s [ 92/192] Installing libfdisk-0:2.42.4- 100% | 205.0 MiB/s | 419.9 KiB | 00m00s [ 93/192] Installing fips-provider-0:1. 100% | 344.5 MiB/s | 3.8 MiB | 00m00s [ 94/192] Installing openssl-libs-1:4.0 100% | 305.9 MiB/s | 5.8 MiB | 00m00s [ 95/192] Installing coreutils-0:9.12-1 100% | 168.7 MiB/s | 8.6 MiB | 00m00s [ 96/192] Installing ca-certificates-0: 100% | 1.5 MiB/s | 2.5 MiB | 00m02s [ 97/192] Installing gzip-0:1.14-4.fc45 100% | 16.0 MiB/s | 443.1 KiB | 00m00s [ 98/192] Installing util-linux-0:2.42. 100% | 127.5 MiB/s | 7.0 MiB | 00m00s [ 99/192] Installing policycoreutils-0: 100% | 40.2 MiB/s | 1.5 MiB | 00m00s [100/192] Installing selinux-policy-0:4 100% | 1.9 MiB/s | 34.5 KiB | 00m00s [101/192] Installing selinux-policy-tar 100% | 147.1 MiB/s | 15.2 MiB | 00m00s [102/192] Installing rpm-sequoia-0:1.10 100% | 286.5 MiB/s | 2.3 MiB | 00m00s [103/192] Installing libfsverity-0:1.7- 100% | 67.8 MiB/s | 69.4 KiB | 00m00s [104/192] Installing libevent-0:2.1.13- 100% | 271.7 MiB/s | 1.1 MiB | 00m00s [105/192] Installing ngtcp2-crypto-ossl 100% | 66.7 MiB/s | 68.3 KiB | 00m00s [106/192] Installing libusb1-0:1.0.30-2 100% | 16.1 MiB/s | 181.4 KiB | 00m00s >>> Running sysusers scriptlet: tpm2-tss-0:4.2.0-1.fc45.aarch64 >>> Finished sysusers scriptlet: tpm2-tss-0:4.2.0-1.fc45.aarch64 >>> Scriptlet output: >>> Creating group 'tss' with GID 59. >>> Creating user 'tss' (Account used for TPM access) with UID 59 and GID 59. >>> [107/192] Installing tpm2-tss-0:4.2.0-1 100% | 248.3 MiB/s | 2.2 MiB | 00m00s [108/192] Installing ima-evm-utils-libs 100% | 91.7 MiB/s | 93.9 KiB | 00m00s [109/192] Installing gnupg2-gpg-agent-0 100% | 26.8 MiB/s | 850.8 KiB | 00m00s [110/192] Installing nettle-0:4.0-5.fc4 100% | 205.0 MiB/s | 839.8 KiB | 00m00s [111/192] Installing gnutls-0:3.8.13-5. 100% | 309.1 MiB/s | 3.7 MiB | 00m00s [112/192] Installing zstd-0:1.5.7-6.fc4 100% | 21.3 MiB/s | 565.9 KiB | 00m00s [113/192] Installing libxml2-0:2.15.4-1 100% | 59.3 MiB/s | 1.7 MiB | 00m00s [114/192] Installing bzip2-0:1.0.8-24.f 100% | 7.1 MiB/s | 175.7 KiB | 00m00s [115/192] Installing add-determinism-0: 100% | 65.7 MiB/s | 1.9 MiB | 00m00s [116/192] Installing build-reproducibil 100% | 1.5 MiB/s | 1.5 KiB | 00m00s [117/192] Installing cpio-0:2.15-10.fc4 100% | 39.1 MiB/s | 1.1 MiB | 00m00s [118/192] Installing ed-0:1.22.6-1.fc46 100% | 6.6 MiB/s | 161.2 KiB | 00m00s [119/192] Installing patch-0:2.8-6.fc46 100% | 10.7 MiB/s | 263.9 KiB | 00m00s [120/192] Installing jansson-0:2.14-5.f 100% | 92.2 MiB/s | 94.4 KiB | 00m00s [121/192] Installing libpfm-0:4.13.0-23 100% | 247.4 MiB/s | 253.3 KiB | 00m00s [122/192] Installing lz4-libs-0:1.10.0- 100% | 193.8 MiB/s | 198.4 KiB | 00m00s [123/192] Installing libarchive-0:3.8.9 100% | 238.7 MiB/s | 977.6 KiB | 00m00s [124/192] Installing libgomp-0:16.2.1-2 100% | 290.2 MiB/s | 594.3 KiB | 00m00s [125/192] Installing libpkgconf-0:2.5.1 100% | 132.0 MiB/s | 135.2 KiB | 00m00s [126/192] Installing pkgconf-0:2.5.1-2. 100% | 4.9 MiB/s | 119.3 KiB | 00m00s [127/192] Installing pkgconf-pkg-config 100% | 77.1 KiB/s | 1.8 KiB | 00m00s [128/192] Installing libtool-ltdl-0:2.6 100% | 92.8 MiB/s | 95.0 KiB | 00m00s [129/192] Installing gdbm-libs-1:1.26-1 100% | 230.5 MiB/s | 236.0 KiB | 00m00s [130/192] Installing cyrus-sasl-lib-0:2 100% | 78.0 MiB/s | 2.4 MiB | 00m00s [131/192] Installing openldap-0:2.6.15- 100% | 187.8 MiB/s | 769.4 KiB | 00m00s [132/192] Installing gnupg2-dirmngr-0:2 100% | 21.9 MiB/s | 648.9 KiB | 00m00s [133/192] Installing gnupg2-0:2.4.9-18. 100% | 146.8 MiB/s | 6.5 MiB | 00m00s [134/192] Installing gpgverify-0:2.2-5. 100% | 9.2 MiB/s | 9.4 KiB | 00m00s [135/192] Installing systemd-standalone 100% | 36.8 MiB/s | 979.9 KiB | 00m00s [136/192] Installing rpm-libs-0:6.1.0-1 100% | 220.1 MiB/s | 1.1 MiB | 00m00s [137/192] Installing rpm-sign-libs-0:6. 100% | 66.9 MiB/s | 68.5 KiB | 00m00s [138/192] Installing rpm-build-libs-0:6 100% | 129.3 MiB/s | 264.9 KiB | 00m00s [139/192] Installing xxhash-libs-0:0.8. 100% | 85.1 MiB/s | 87.2 KiB | 00m00s [140/192] Installing libbrotli-0:1.2.0- 100% | 222.5 MiB/s | 911.5 KiB | 00m00s [141/192] Installing libnghttp2-0:1.69. 100% | 194.4 MiB/s | 199.0 KiB | 00m00s [142/192] Installing libnghttp3-0:1.18. 100% | 203.3 MiB/s | 208.2 KiB | 00m00s [143/192] Installing keyutils-libs-0:1. 100% | 97.3 MiB/s | 99.7 KiB | 00m00s [144/192] Installing libcom_err-0:1.47. 100% | 109.6 MiB/s | 112.2 KiB | 00m00s [145/192] Installing libverto-0:0.3.2-1 100% | 69.5 MiB/s | 71.1 KiB | 00m00s [146/192] Installing krb5-libs-0:1.22.2 100% | 253.4 MiB/s | 2.5 MiB | 00m00s [147/192] Installing libcbor-0:0.14.0-3 100% | 137.7 MiB/s | 141.0 KiB | 00m00s [148/192] Installing libfido2-0:1.17.0- 100% | 137.8 MiB/s | 282.2 KiB | 00m00s [149/192] Installing libssh-0:0.12.2-1. 100% | 235.5 MiB/s | 723.4 KiB | 00m00s [150/192] Installing libcurl-0:8.23.0~r 100% | 255.7 MiB/s | 1.0 MiB | 00m00s [151/192] Installing elfutils-debuginfo 100% | 5.7 MiB/s | 146.3 KiB | 00m00s [152/192] Installing binutils-0:2.47.50 100% | 269.7 MiB/s | 27.2 MiB | 00m00s [153/192] Installing elfutils-0:0.196-1 100% | 108.0 MiB/s | 3.8 MiB | 00m00s [154/192] Installing gdb-minimal-0:17.2 100% | 214.8 MiB/s | 13.5 MiB | 00m00s [155/192] Installing debugedit-0:5.3-3. 100% | 12.7 MiB/s | 324.2 KiB | 00m00s [156/192] Installing curl-0:8.23.0~rc2- 100% | 16.1 MiB/s | 528.3 KiB | 00m00s [157/192] Installing rpm-0:6.1.0-1.fc46 100% | 59.9 MiB/s | 2.8 MiB | 00m00s [158/192] Installing cmake-srpm-macros- 100% | 785.2 KiB/s | 804.0 B | 00m00s [159/192] Installing efi-srpm-macros-0: 100% | 40.3 MiB/s | 41.3 KiB | 00m00s [160/192] Installing java-srpm-macros-0 100% | 0.0 B/s | 1.1 KiB | 00m00s [161/192] Installing lua-srpm-macros-0: 100% | 0.0 B/s | 1.9 KiB | 00m00s [162/192] Installing tree-sitter-srpm-m 100% | 9.4 MiB/s | 9.6 KiB | 00m00s [163/192] Installing zig-srpm-macros-0: 100% | 0.0 B/s | 1.9 KiB | 00m00s [164/192] Installing filesystem-srpm-ma 100% | 38.0 MiB/s | 38.9 KiB | 00m00s [165/192] Installing rust-srpm-macros-0 100% | 0.0 B/s | 6.4 KiB | 00m00s [166/192] Installing qt6-srpm-macros-0: 100% | 0.0 B/s | 748.0 B | 00m00s [167/192] Installing qt5-srpm-macros-0: 100% | 0.0 B/s | 776.0 B | 00m00s [168/192] Installing perl-srpm-macros-0 100% | 185.5 KiB/s | 1.1 KiB | 00m00s [169/192] Installing package-notes-srpm 100% | 0.0 B/s | 2.1 KiB | 00m00s [170/192] Installing openblas-srpm-macr 100% | 0.0 B/s | 404.0 B | 00m00s [171/192] Installing ocaml-srpm-macros- 100% | 0.0 B/s | 2.1 KiB | 00m00s [172/192] Installing meson-srpm-macros- 100% | 0.0 B/s | 1.9 KiB | 00m00s [173/192] Installing kernel-srpm-macros 100% | 0.0 B/s | 2.3 KiB | 00m00s [174/192] Installing gnome-srpm-macros- 100% | 0.0 B/s | 4.1 KiB | 00m00s [175/192] Installing gnat-srpm-macros-0 100% | 0.0 B/s | 1.3 KiB | 00m00s [176/192] Installing ghc-srpm-macros-0: 100% | 0.0 B/s | 1.0 KiB | 00m00s [177/192] Installing gap-srpm-macros-0: 100% | 0.0 B/s | 2.7 KiB | 00m00s [178/192] Installing fpc-srpm-macros-0: 100% | 0.0 B/s | 420.0 B | 00m00s [179/192] Installing ansible-srpm-macro 100% | 35.4 MiB/s | 36.2 KiB | 00m00s [180/192] Installing redhat-rpm-config- 100% | 93.0 MiB/s | 190.4 KiB | 00m00s [181/192] Installing forge-srpm-macros- 100% | 39.3 MiB/s | 40.3 KiB | 00m00s [182/192] Installing rpm-build-0:6.1.0- 100% | 21.8 MiB/s | 626.1 KiB | 00m00s [183/192] Installing erlang-srpm-macros 100% | 2.5 MiB/s | 2.6 KiB | 00m00s [184/192] Installing pyproject-srpm-mac 100% | 3.9 MiB/s | 4.0 KiB | 00m00s [185/192] Installing fonts-srpm-macros- 100% | 55.7 MiB/s | 57.0 KiB | 00m00s [186/192] Installing go-srpm-macros-0:3 100% | 61.6 MiB/s | 63.0 KiB | 00m00s [187/192] Installing R-srpm-macros-0:1. 100% | 4.3 MiB/s | 4.4 KiB | 00m00s [188/192] Installing python-srpm-macros 100% | 51.7 MiB/s | 52.9 KiB | 00m00s [189/192] Installing rpm-plugin-selinux 100% | 67.3 MiB/s | 68.9 KiB | 00m00s [190/192] Installing which-0:2.25-2.fc4 100% | 4.7 MiB/s | 125.8 KiB | 00m00s [191/192] Installing shadow-utils-2:4.2 100% | 94.6 MiB/s | 4.4 MiB | 00m00s [192/192] Installing info-0:7.3-3.fc45. 100% | 50.6 KiB/s | 424.8 KiB | 00m08s Complete! Finish: installing minimal buildroot with dnf5 Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: R-srpm-macros-1.3.7-3.fc45.noarch add-determinism-0.7.3-3.fc45.aarch64 alternatives-1.33-6.fc45.aarch64 ansible-srpm-macros-1-22.fc45.noarch audit-libs-4.2.1-2.fc45.aarch64 bash-5.3.20-1.fc46.aarch64 binutils-2.47.50-12.fc46.aarch64 build-reproducibility-srpm-macros-0.7.3-3.fc45.noarch bzip2-1.0.8-24.fc45.aarch64 bzip2-libs-1.0.8-24.fc45.aarch64 ca-certificates-2026.2.90_v9.0.317-1.fc46.noarch cmake-srpm-macros-4.3.0-5.fc45.noarch coreutils-9.12-1.fc46.aarch64 coreutils-common-9.12-1.fc46.aarch64 cpio-2.15-10.fc45.aarch64 crypto-policies-20260713-2.gitc42da77.fc45.noarch curl-8.23.0~rc2-1.fc46.aarch64 cyrus-sasl-lib-2.1.28-37.fc45.aarch64 debugedit-5.3-3.fc45.aarch64 diffutils-3.12-6.fc45.aarch64 dwz-0.17-3.fc45.aarch64 ed-1.22.6-1.fc46.aarch64 efi-srpm-macros-6-9.fc45.noarch elfutils-0.196-1.fc46.aarch64 elfutils-debuginfod-client-0.196-1.fc46.aarch64 elfutils-libelf-0.196-1.fc46.aarch64 elfutils-libs-0.196-1.fc46.aarch64 erlang-srpm-macros-0.4.0-1.fc46.noarch fedora-gpg-keys-46-0.3.noarch fedora-release-46-0.1.noarch fedora-release-common-46-0.1.noarch fedora-release-identity-basic-46-0.1.noarch fedora-repos-46-0.3.noarch fedora-repos-rawhide-46-0.3.noarch file-5.48-3.fc46.aarch64 file-libs-5.48-3.fc46.aarch64 filesystem-3.18-59.fc45.aarch64 filesystem-srpm-macros-3.18-59.fc45.noarch findutils-4.11.0-2.fc45.aarch64 fips-provider-1.5.3-1.fc46.aarch64 fonts-srpm-macros-5.0.0-4.fc45.noarch forge-srpm-macros-0.4.0-5.fc45.noarch fpc-srpm-macros-1.3-17.fc45.noarch gap-srpm-macros-2-3.fc45.noarch gawk-5.4.1-1.fc45.aarch64 gdb-minimal-17.2-6.fc46.aarch64 gdbm-libs-1.26-1.fc46.aarch64 ghc-srpm-macros-1.10-2.fc45.noarch glibc-2.44.9000-4.fc46.aarch64 glibc-common-2.44.9000-4.fc46.aarch64 glibc-gconv-extra-2.44.9000-4.fc46.aarch64 glibc-minimal-langpack-2.44.9000-4.fc46.aarch64 gmp-6.3.0-6.fc45.aarch64 gnat-srpm-macros-7-3.fc45.noarch gnome-srpm-macros-1.0-2.fc45.noarch gnulib-l10n-20241231-4.fc45.noarch gnupg2-2.4.9-18.fc45.aarch64 gnupg2-dirmngr-2.4.9-18.fc45.aarch64 gnupg2-gpg-agent-2.4.9-18.fc45.aarch64 gnupg2-gpgconf-2.4.9-18.fc45.aarch64 gnupg2-keyboxd-2.4.9-18.fc45.aarch64 gnupg2-verify-2.4.9-18.fc45.aarch64 gnutls-3.8.13-5.fc46.aarch64 go-srpm-macros-3.8.0-3.fc45.noarch gpg-pubkey-4f50a6114cd5c6976a7f1179655a4b02f577861e-6888bc98 gpg-pubkey-b2e766fa50ca6fa2d5ed06fc09d879e09488fb64-6a6b46b4 gpg-pubkey-d924b10d3e810dabdd8b56b596e7e91491211fce-697c9899 gpgverify-2.2-5.fc45.noarch grep-3.12-4.fc45.aarch64 gzip-1.14-4.fc45.aarch64 ima-evm-utils-libs-1.6.2-12.fc45.aarch64 info-7.3-3.fc45.aarch64 jansson-2.14-5.fc45.aarch64 java-srpm-macros-1-9.fc45.noarch json-c-0.18-9.fc45.aarch64 kernel-srpm-macros-1.0-30.fc45.noarch keyutils-libs-1.6.3-8.fc45.aarch64 krb5-libs-1.22.2-9.fc45.aarch64 libacl-2.4.0-2.fc45.aarch64 libarchive-3.8.9-2.fc46.aarch64 libassuan-2.5.7-6.fc45.aarch64 libattr-2.6.0-2.fc45.aarch64 libblkid-2.42.4-2.fc46.aarch64 libbrotli-1.2.0-6.fc45.aarch64 libcap-2.78-2.fc45.aarch64 libcap-ng-0.9.6-1.fc46.aarch64 libcbor-0.14.0-3.fc45.aarch64 libcom_err-1.47.4-2.fc45.aarch64 libcurl-8.23.0~rc2-1.fc46.aarch64 libeconf-0.7.9-4.fc45.aarch64 libevent-2.1.13-1.fc46.aarch64 libfdisk-2.42.4-2.fc46.aarch64 libffi-3.8.0-1.fc46.aarch64 libfido2-1.17.0-6.fc46.aarch64 libfsverity-1.7-4.fc45.aarch64 libgcc-16.2.1-2.fc46.1.aarch64 libgcrypt-1.12.4-1.fc46.aarch64 libgomp-16.2.1-2.fc46.1.aarch64 libgpg-error-1.61-2.fc45.aarch64 libidn2-2.3.8-4.fc45.aarch64 libksba-1.8.1-1.fc46.aarch64 liblastlog2-2.42.4-2.fc46.aarch64 libmount-2.42.4-2.fc46.aarch64 libnghttp2-1.69.0-6.fc46.aarch64 libnghttp3-1.18.0-1.fc45.aarch64 libpfm-4.13.0-23.fc45.aarch64 libpkgconf-2.5.1-2.fc45.aarch64 libpsl-0.23.3-1.fc46.aarch64 libselinux-3.11-5.fc46.aarch64 libselinux-utils-3.11-5.fc46.aarch64 libsemanage-3.11-4.fc46.aarch64 libsepol-3.11-2.fc45.aarch64 libsmartcols-2.42.4-2.fc46.aarch64 libssh-0.12.2-1.fc45.aarch64 libssh-config-0.12.2-1.fc45.noarch libstdc++-16.2.1-2.fc46.1.aarch64 libtasn1-4.21.0-2.fc45.aarch64 libtool-ltdl-2.6.2-1.fc46.aarch64 libunistring-1.1-12.fc45.aarch64 libusb1-1.0.30-2.fc45.aarch64 libuuid-2.42.4-2.fc46.aarch64 libverto-0.3.2-13.fc45.aarch64 libxcrypt-4.5.2-4.fc45.aarch64 libxml2-2.15.4-1.fc46.aarch64 libzstd-1.5.7-6.fc45.aarch64 linkdupes-0.7.3-3.fc45.aarch64 lua-libs-5.5.1-2.fc46.aarch64 lua-srpm-macros-1-18.fc45.noarch lz4-libs-1.10.0-5.fc45.aarch64 meson-srpm-macros-1.12.1-2.fc46.noarch mpfr-4.2.2-4.fc45.aarch64 ncurses-base-6.6-3.fc45.noarch ncurses-libs-6.6-3.fc45.aarch64 nettle-4.0-5.fc45.aarch64 ngtcp2-1.22.1-3.fc45.aarch64 ngtcp2-crypto-ossl-1.22.1-3.fc45.aarch64 npth-1.8-5.fc45.aarch64 ocaml-srpm-macros-11-4.fc45.noarch openblas-srpm-macros-2-23.fc46.noarch openldap-2.6.15-1.fc46.aarch64 openssl-libs-4.0.3-1.fc46.aarch64 p11-kit-0.26.5-1.fc45.aarch64 p11-kit-trust-0.26.5-1.fc45.aarch64 package-notes-srpm-macros-0.20-2.fc45.noarch pam-libs-1.7.2-4.fc45.aarch64 patch-2.8-6.fc46.aarch64 pcre2-10.47-1.fc45.2.aarch64 pcre2-syntax-10.47-1.fc45.2.noarch perl-srpm-macros-1-65.fc45.noarch pkgconf-2.5.1-2.fc45.aarch64 pkgconf-m4-2.5.1-2.fc45.noarch pkgconf-pkg-config-2.5.1-2.fc45.aarch64 policycoreutils-3.11-2.fc45.aarch64 popt-1.19-11.fc45.aarch64 publicsuffix-list-dafsa-20260624-2.fc45.noarch pyproject-srpm-macros-1.23.2-1.fc45.noarch python-srpm-macros-3.15-2.fc45.noarch qt5-srpm-macros-5.15.18-3.fc45.noarch qt6-srpm-macros-6.11.2-1.fc46.noarch readline-8.3-7.fc46.aarch64 redhat-rpm-config-345-4.fc46.noarch redhat-systemd-presets-102-3.fc45.noarch redhat-systemd-presets-common-102-3.fc45.noarch rpm-6.1.0-1.fc46.aarch64 rpm-build-6.1.0-1.fc46.aarch64 rpm-build-libs-6.1.0-1.fc46.aarch64 rpm-libs-6.1.0-1.fc46.aarch64 rpm-plugin-selinux-6.1.0-1.fc46.aarch64 rpm-sequoia-1.10.3-1.fc46.aarch64 rpm-sign-libs-6.1.0-1.fc46.aarch64 rust-srpm-macros-28.5-2.fc45.noarch sed-4.10-2.fc45.aarch64 selinux-policy-45.21-1.fc46.noarch selinux-policy-targeted-45.21-1.fc46.noarch setup-2.15.1-2.fc45.noarch shadow-utils-4.20.0-1.fc45.aarch64 sqlite-libs-3.53.4-1.fc45.aarch64 systemd-libs-262-3.fc46.aarch64 systemd-standalone-sysusers-262-3.fc46.aarch64 tar-1.35-9.fc45.aarch64 tpm2-tss-4.2.0-1.fc45.aarch64 tree-sitter-srpm-macros-0.4.6-2.fc45.noarch unzip-6.0-71.fc45.aarch64 util-linux-2.42.4-2.fc46.aarch64 util-linux-core-2.42.4-2.fc46.aarch64 which-2.25-2.fc45.aarch64 xxhash-libs-0.8.4-1.fc46.aarch64 xz-5.8.4-1.fc46.aarch64 xz-libs-5.8.4-1.fc46.aarch64 zig-srpm-macros-1-9.fc45.noarch zip-3.0-46.fc45.aarch64 zlib-ng-compat-2.3.3-6.fc45.aarch64 zstd-1.5.7-6.fc45.aarch64 Start: buildsrpm Start: rpmbuild -bs Building target platforms: aarch64 Building for target aarch64 setting SOURCE_DATE_EPOCH=1786752000 Wrote: /builddir/build/SRPMS/gromacs-2026.3-1.fc46.src.rpm Finish: rpmbuild -bs INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-aarch64-1791482221.889122/root/var/log/dnf5.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-faomxkci/gromacs/gromacs.spec) Config(child) 0 minutes 33 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/gromacs-2026.3-1.fc46.src.rpm) Config(fedora-rawhide-aarch64) Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-aarch64-bootstrap-1791482221.889122/root. INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-aarch64-bootstrap-1791482221.889122/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-aarch64-1791482221.889122/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-6.1.0-1.fc46.aarch64 rpm-sequoia-1.10.3-1.fc46.aarch64 dnf5-5.4.6.0-1.fc46.aarch64 dnf5-plugins-5.4.6.0-1.fc46.aarch64 Finish: chroot init Start: build phase for gromacs-2026.3-1.fc46.src.rpm Start: build setup for gromacs-2026.3-1.fc46.src.rpm Building target platforms: aarch64 Building for target aarch64 setting SOURCE_DATE_EPOCH=1786752000 Wrote: /builddir/build/SRPMS/gromacs-2026.3-1.fc46.src.rpm Updating and loading repositories: fedora 100% | 65.0 KiB/s | 9.7 KiB | 00m00s Copr repository 100% | 15.9 KiB/s | 1.5 KiB | 00m00s Repositories loaded. Package Arch Version Repository Size Installing: cmake aarch64 0:4.3.0-5.fc45 fedora 32.8 MiB fftw-devel aarch64 0:3.3.10-18.fc46 copr_base 282.2 KiB flexiblas-devel aarch64 0:3.5.0-4.fc46 fedora 6.0 MiB gcc-c++ aarch64 0:16.2.1-2.fc46.1 fedora 44.8 MiB gsl-devel aarch64 0:2.8-4.fc45 fedora 1.6 MiB hwloc aarch64 0:2.14.0-3.fc46 fedora 777.7 KiB hwloc-devel aarch64 0:2.14.0-3.fc46 fedora 658.5 KiB lmfit-devel aarch64 0:11.0-1.fc46 fedora 156.0 KiB mpich-devel aarch64 0:5.0.2-1.fc46 copr_base 2.3 MiB muParser-devel aarch64 0:2.3.5-6.fc45 fedora 127.3 KiB ocl-icd-devel aarch64 0:2.3.5-1.fc45 fedora 336.7 KiB opencl-headers noarch 0:3.1-1.20260512git6fe718c.fc45 fedora 790.9 KiB openmpi-devel aarch64 0:5.0.11-1.fc46 fedora 3.2 MiB perl-Carp noarch 0:1.54-527.fc45 fedora 46.6 KiB perl-Exporter noarch 0:5.79-527.fc45 fedora 54.2 KiB perl-File-Basename noarch 0:2.86-527.fc45 fedora 14.0 KiB perl-File-Copy noarch 0:2.43-527.fc45 fedora 19.6 KiB perl-PathTools aarch64 0:3.95-527.fc45 fedora 224.0 KiB perl-Scalar-List-Utils aarch64 5:1.70-527.fc45 fedora 152.9 KiB perl-lib aarch64 0:0.65-527.fc45 fedora 8.5 KiB perl-libs aarch64 4:5.44.0-527.fc45 fedora 12.0 MiB perl-vars noarch 0:1.05-527.fc45 fedora 3.9 KiB tng-devel aarch64 0:1.8.2-24.fc45 fedora 237.2 KiB Installing dependencies: annobin-docs noarch 0:13.32-1.fc46 fedora 99.7 KiB annobin-plugin-gcc aarch64 0:13.32-1.fc46 fedora 736.6 KiB cmake-data noarch 0:4.3.0-5.fc45 fedora 9.4 MiB cmake-filesystem aarch64 0:4.3.0-5.fc45 fedora 0.0 B cmake-rpm-macros noarch 0:4.3.0-5.fc45 fedora 8.4 KiB cpp aarch64 0:16.2.1-2.fc46.1 fedora 40.8 MiB emacs-filesystem aarch64 1:31.1-1.fc46 fedora 0.0 B environment-modules aarch64 0:5.7.0-1.fc46 fedora 1.6 MiB expat aarch64 0:2.8.3-1.fc46 fedora 378.4 KiB fftw aarch64 0:3.3.10-18.fc46 copr_base 221.0 KiB fftw-libs aarch64 0:3.3.10-18.fc46 copr_base 0.0 B fftw-libs-double aarch64 0:3.3.10-18.fc46 copr_base 1.8 MiB fftw-libs-long aarch64 0:3.3.10-18.fc46 copr_base 2.3 MiB fftw-libs-single aarch64 0:3.3.10-18.fc46 copr_base 1.9 MiB flexiblas aarch64 0:3.5.0-4.fc46 fedora 38.0 KiB flexiblas-netlib aarch64 0:3.5.0-4.fc46 fedora 14.2 MiB flexiblas-netlib64 aarch64 0:3.5.0-4.fc46 fedora 14.0 MiB flexiblas-openblas-openmp aarch64 0:3.5.0-4.fc46 fedora 67.2 KiB flexiblas-openblas-openmp64 aarch64 0:3.5.0-4.fc46 fedora 67.2 KiB gcc aarch64 0:16.2.1-2.fc46.1 fedora 112.5 MiB gcc-gfortran aarch64 0:16.2.1-2.fc46.1 fedora 43.1 MiB gcc-plugin-annobin aarch64 0:16.2.1-2.fc46.1 fedora 69.1 KiB glibc-devel aarch64 0:2.44.9000-4.fc46 fedora 2.3 MiB groff-base aarch64 0:1.24.2-1.fc46 fedora 4.5 MiB gsl aarch64 0:2.8-4.fc45 fedora 3.4 MiB hwloc-libs aarch64 0:2.14.0-3.fc46 fedora 2.9 MiB infiniband-diags aarch64 0:65.0-5.fc46 fedora 1.6 MiB jsoncpp aarch64 0:1.9.6-3.fc44 fedora 271.7 KiB kernel-headers aarch64 0:7.3.0-0.rc6.51.fc46 fedora 6.9 MiB less aarch64 0:710-1.fc46 fedora 548.7 KiB libasan aarch64 0:16.2.1-2.fc46.1 fedora 1.5 MiB libatomic aarch64 0:16.2.1-2.fc46.1 fedora 77.7 KiB libedit aarch64 0:3.1-60.20260512cvs.fc45 fedora 280.3 KiB libfabric aarch64 0:2.5.1-3.fc45 fedora 1.9 MiB libgfortran aarch64 0:16.2.1-2.fc46.1 fedora 1.7 MiB libibumad aarch64 0:65.0-5.fc46 fedora 67.9 KiB libibverbs aarch64 0:65.0-5.fc46 fedora 1.8 MiB libmpc aarch64 0:1.4.1-2.fc45 fedora 216.8 KiB libnl3 aarch64 0:3.12.0-4.fc45 fedora 1.3 MiB libpipeline aarch64 0:1.5.8-5.fc45 fedora 144.9 KiB librdmacm aarch64 0:65.0-5.fc46 fedora 206.3 KiB libstdc++-devel aarch64 0:16.2.1-2.fc46.1 fedora 40.4 MiB libtommath aarch64 0:1.3.1~rc1-8.fc45 fedora 134.4 KiB libubsan aarch64 0:16.2.1-2.fc46.1 fedora 475.9 KiB libuv aarch64 1:1.52.1-2.fc45 fedora 616.4 KiB libxcrypt-devel aarch64 0:4.5.2-4.fc45 fedora 31.0 KiB lmfit aarch64 0:11.0-1.fc46 fedora 78.4 KiB make aarch64 1:4.4.1-13.fc45 fedora 1.8 MiB man-db aarch64 0:2.13.1-4.fc45 fedora 3.3 MiB mpdecimal aarch64 0:4.0.1-4.fc45 fedora 281.1 KiB mpich aarch64 0:5.0.2-1.fc46 copr_base 13.3 MiB muParser aarch64 0:2.3.5-6.fc45 fedora 552.7 KiB munge-libs aarch64 0:0.5.18-3.fc45 fedora 67.9 KiB ncurses aarch64 0:6.6-3.fc45 fedora 895.8 KiB ninja-build aarch64 0:1.13.2-6.fc45 fedora 468.8 KiB ocl-icd aarch64 0:2.3.5-1.fc45 fedora 284.2 KiB openblas aarch64 0:0.3.34-1.fc45 fedora 138.1 KiB openblas-openmp aarch64 0:0.3.34-1.fc45 fedora 22.2 MiB openblas-openmp64 aarch64 0:0.3.34-1.fc45 fedora 22.0 MiB openmpi aarch64 0:5.0.11-1.fc46 fedora 7.2 MiB openssh aarch64 0:10.5p1-1.fc46 fedora 1.6 MiB openssh-clients aarch64 0:10.5p1-1.fc46 fedora 2.6 MiB orangefs aarch64 0:2.10.1-5.fc45 fedora 3.3 MiB perl-AutoLoader noarch 0:5.74-527.fc45 fedora 20.6 KiB perl-B aarch64 0:1.92-527.fc45 fedora 557.5 KiB perl-Class-Struct noarch 0:0.68-527.fc45 fedora 25.4 KiB perl-Data-Dumper aarch64 0:2.192-528.fc45 fedora 135.5 KiB perl-Digest noarch 0:1.20-527.fc45 fedora 35.2 KiB perl-Digest-MD5 aarch64 0:2.59-527.fc45 fedora 103.6 KiB perl-DynaLoader aarch64 0:1.57-527.fc45 fedora 32.1 KiB perl-Encode aarch64 4:3.24-527.fc45 fedora 4.8 MiB perl-Errno aarch64 0:1.39-527.fc45 fedora 8.4 KiB perl-Fcntl aarch64 0:1.20-527.fc45 fedora 92.7 KiB perl-File-Path noarch 0:2.18-527.fc45 fedora 63.4 KiB perl-File-Temp noarch 1:0.231.200-527.fc45 fedora 163.7 KiB perl-File-stat noarch 0:1.15-527.fc45 fedora 13.7 KiB perl-FileHandle noarch 0:2.05-527.fc45 fedora 9.4 KiB perl-Getopt-Long noarch 1:2.58-527.fc45 fedora 144.5 KiB perl-Getopt-Std noarch 0:1.15-527.fc45 fedora 12.5 KiB perl-HTTP-Tiny noarch 0:0.096-528.fc45 fedora 162.4 KiB perl-IO aarch64 0:1.56-527.fc45 fedora 191.3 KiB perl-IO-Socket-IP noarch 0:0.44-527.fc45 fedora 100.5 KiB perl-IO-Socket-SSL noarch 0:2.099-2.fc45 fedora 726.9 KiB perl-IPC-Open3 noarch 0:1.24-527.fc45 fedora 27.7 KiB perl-MIME-Base32 noarch 0:1.303-26.fc45 fedora 30.7 KiB perl-MIME-Base64 aarch64 0:3.16-527.fc45 fedora 93.9 KiB perl-Net-SSLeay aarch64 0:1.96-5.fc45 fedora 1.4 MiB perl-POSIX aarch64 0:2.26-527.fc45 fedora 261.4 KiB perl-Pod-Escapes noarch 1:1.07-527.fc45 fedora 24.9 KiB perl-Pod-Perldoc noarch 0:3.28.01-527.fc45 fedora 163.8 KiB perl-Pod-Simple noarch 1:3.48-527.fc45 fedora 565.2 KiB perl-Pod-Usage noarch 4:2.05-527.fc45 fedora 86.3 KiB perl-SelectSaver noarch 0:1.03-527.fc45 fedora 2.1 KiB perl-Socket aarch64 4:2.043-1.fc46 fedora 145.8 KiB perl-Storable aarch64 1:3.41-527.fc45 fedora 242.9 KiB perl-Symbol noarch 0:1.09-527.fc45 fedora 6.8 KiB perl-Term-ANSIColor noarch 0:5.01-527.fc45 fedora 97.5 KiB perl-Term-Cap noarch 0:1.18-527.fc45 fedora 29.3 KiB perl-Text-ParseWords noarch 0:3.31-527.fc45 fedora 13.6 KiB perl-Text-Tabs+Wrap noarch 0:2024.001-527.fc45 fedora 22.6 KiB perl-Time-HiRes aarch64 4:1.9780-527.fc45 fedora 151.7 KiB perl-Time-Local noarch 2:1.350-527.fc45 fedora 69.0 KiB perl-URI noarch 0:5.37-1.fc46 fedora 275.5 KiB perl-Unicode-Normalize aarch64 0:1.32-527.fc45 fedora 524.5 KiB perl-base noarch 0:2.27-527.fc45 fedora 12.6 KiB perl-constant noarch 0:1.33-528.fc45 fedora 26.3 KiB perl-if noarch 0:0.61.000-527.fc45 fedora 5.8 KiB perl-interpreter aarch64 4:5.44.0-527.fc45 fedora 175.8 KiB perl-libnet noarch 0:3.15-528.fc45 fedora 288.4 KiB perl-locale noarch 0:1.13-527.fc45 fedora 6.1 KiB perl-mro aarch64 0:1.30-527.fc45 fedora 81.5 KiB perl-overload noarch 0:1.40-527.fc45 fedora 71.6 KiB perl-overloading noarch 0:0.03-527.fc45 fedora 4.8 KiB perl-parent noarch 1:0.244-527.fc45 fedora 10.3 KiB perl-podlators noarch 1:6.1.1-1.fc46 fedora 327.2 KiB pmix aarch64 0:6.1.0-1.fc46 fedora 2.2 MiB procps-ng aarch64 0:4.0.7-1.fc46 fedora 1.8 MiB prrte aarch64 0:4.1.0-2.fc46 fedora 351.8 KiB prrte-libs aarch64 0:4.1.0-2.fc46 fedora 1.6 MiB python-pip-wheel noarch 0:26.2.1-1.fc46 fedora 1.3 MiB python3 aarch64 0:3.15.0~rc3-2.fc46 fedora 84.8 KiB python3-libs aarch64 0:3.15.0~rc3-2.fc46 fedora 49.8 MiB rdma-core-common noarch 0:65.0-5.fc46 fedora 21.9 KiB rdma-core-devel aarch64 0:65.0-5.fc46 fedora 658.7 KiB rhash aarch64 0:1.4.5-5.fc45 fedora 394.6 KiB rpm-mpi-hooks noarch 0:8-14.fc45 fedora 8.7 KiB tcl aarch64 1:9.0.3-1.fc45 fedora 4.3 MiB tng aarch64 0:1.8.2-24.fc45 fedora 348.4 KiB tzdata noarch 0:2026e-1.fc46 fedora 1.3 MiB ucx aarch64 0:1.19.0-4.fc46 fedora 2.6 MiB vim-filesystem noarch 2:9.2.1129-1.fc46 fedora 40.0 B yaksa aarch64 0:0.4-1.fc46 fedora 5.0 MiB Transaction Summary: Installing: 155 packages Total size of inbound packages is 174 MiB. Need to download 174 MiB. After this operation, 587 MiB extra will be used (install 587 MiB, remove 0 B). [ 1/155] flexiblas-devel-0:3.5.0-4.fc4 100% | 1.4 MiB/s | 237.5 KiB | 00m00s [ 2/155] cmake-0:4.3.0-5.fc45.aarch64 100% | 27.1 MiB/s | 10.8 MiB | 00m00s [ 3/155] gsl-devel-0:2.8-4.fc45.aarch6 100% | 2.1 MiB/s | 655.1 KiB | 00m00s [ 4/155] hwloc-0:2.14.0-3.fc46.aarch64 100% | 1.0 MiB/s | 209.5 KiB | 00m00s [ 5/155] hwloc-devel-0:2.14.0-3.fc46.a 100% | 2.1 MiB/s | 372.8 KiB | 00m00s [ 6/155] lmfit-devel-0:11.0-1.fc46.aar 100% | 748.0 KiB/s | 71.8 KiB | 00m00s [ 7/155] muParser-devel-0:2.3.5-6.fc45 100% | 344.2 KiB/s | 31.0 KiB | 00m00s [ 8/155] gcc-c++-0:16.2.1-2.fc46.1.aar 100% | 20.7 MiB/s | 15.9 MiB | 00m01s [ 9/155] ocl-icd-devel-0:2.3.5-1.fc45. 100% | 678.5 KiB/s | 63.8 KiB | 00m00s [ 10/155] opencl-headers-0:3.1-1.202605 100% | 932.4 KiB/s | 93.2 KiB | 00m00s [ 11/155] openmpi-devel-0:5.0.11-1.fc46 100% | 6.2 MiB/s | 2.3 MiB | 00m00s [ 12/155] perl-Carp-0:1.54-527.fc45.noa 100% | 79.8 KiB/s | 28.6 KiB | 00m00s [ 13/155] perl-PathTools-0:3.95-527.fc4 100% | 271.7 KiB/s | 88.0 KiB | 00m00s [ 14/155] perl-Exporter-0:5.79-527.fc45 100% | 1.9 MiB/s | 30.6 KiB | 00m00s [ 15/155] perl-File-Basename-0:2.86-527 100% | 1.0 MiB/s | 16.8 KiB | 00m00s [ 16/155] perl-File-Copy-0:2.43-527.fc4 100% | 469.8 KiB/s | 19.7 KiB | 00m00s [ 17/155] perl-Scalar-List-Utils-5:1.70 100% | 1.9 MiB/s | 73.7 KiB | 00m00s [ 18/155] perl-lib-0:0.65-527.fc45.aarc 100% | 383.7 KiB/s | 14.6 KiB | 00m00s [ 19/155] perl-libs-4:5.44.0-527.fc45.a 100% | 91.3 MiB/s | 2.6 MiB | 00m00s [ 20/155] perl-vars-0:1.05-527.fc45.noa 100% | 452.5 KiB/s | 12.7 KiB | 00m00s [ 21/155] tng-devel-0:1.8.2-24.fc45.aar 100% | 417.3 KiB/s | 30.0 KiB | 00m00s [ 22/155] cmake-data-0:4.3.0-5.fc45.noa 100% | 47.0 MiB/s | 2.7 MiB | 00m00s [ 23/155] cmake-filesystem-0:4.3.0-5.fc 100% | 530.6 KiB/s | 14.9 KiB | 00m00s [ 24/155] expat-0:2.8.3-1.fc46.aarch64 100% | 8.3 MiB/s | 127.2 KiB | 00m00s [ 25/155] jsoncpp-0:1.9.6-3.fc44.aarch6 100% | 1.8 MiB/s | 94.8 KiB | 00m00s [ 26/155] libuv-1:1.52.1-2.fc45.aarch64 100% | 5.2 MiB/s | 265.0 KiB | 00m00s [ 27/155] fftw-devel-0:3.3.10-18.fc46.a 100% | 509.9 KiB/s | 128.0 KiB | 00m00s [ 28/155] make-1:4.4.1-13.fc45.aarch64 100% | 7.6 MiB/s | 583.4 KiB | 00m00s [ 29/155] mpich-devel-0:5.0.2-1.fc46.aa 100% | 4.7 MiB/s | 1.6 MiB | 00m00s [ 30/155] rhash-0:1.4.5-5.fc45.aarch64 100% | 1.3 MiB/s | 191.8 KiB | 00m00s [ 31/155] flexiblas-0:3.5.0-4.fc46.aarc 100% | 285.5 KiB/s | 22.6 KiB | 00m00s [ 32/155] flexiblas-netlib-0:3.5.0-4.fc 100% | 20.2 MiB/s | 4.0 MiB | 00m00s [ 33/155] flexiblas-netlib64-0:3.5.0-4. 100% | 13.0 MiB/s | 3.8 MiB | 00m00s [ 34/155] libgfortran-0:16.2.1-2.fc46.1 100% | 1.2 MiB/s | 467.4 KiB | 00m00s [ 35/155] libmpc-0:1.4.1-2.fc45.aarch64 100% | 283.9 KiB/s | 73.8 KiB | 00m00s [ 36/155] gsl-0:2.8-4.fc45.aarch64 100% | 3.8 MiB/s | 1.1 MiB | 00m00s [ 37/155] libstdc++-devel-0:16.2.1-2.fc 100% | 11.4 MiB/s | 5.8 MiB | 00m01s [ 38/155] gcc-0:16.2.1-2.fc46.1.aarch64 100% | 50.4 MiB/s | 39.9 MiB | 00m01s [ 39/155] hwloc-libs-0:2.14.0-3.fc46.aa 100% | 14.3 MiB/s | 2.1 MiB | 00m00s [ 40/155] rdma-core-devel-0:65.0-5.fc46 100% | 3.7 MiB/s | 500.2 KiB | 00m00s [ 41/155] lmfit-0:11.0-1.fc46.aarch64 100% | 222.0 KiB/s | 27.5 KiB | 00m00s [ 42/155] muParser-0:2.3.5-6.fc45.aarch 100% | 1.2 MiB/s | 159.7 KiB | 00m00s [ 43/155] ocl-icd-0:2.3.5-1.fc45.aarch6 100% | 553.2 KiB/s | 66.9 KiB | 00m00s [ 44/155] gcc-gfortran-0:16.2.1-2.fc46. 100% | 24.6 MiB/s | 14.9 MiB | 00m01s [ 45/155] openmpi-0:5.0.11-1.fc46.aarch 100% | 3.0 MiB/s | 1.9 MiB | 00m01s [ 46/155] pmix-0:6.1.0-1.fc46.aarch64 100% | 1.0 MiB/s | 710.8 KiB | 00m01s [ 47/155] rpm-mpi-hooks-0:8-14.fc45.noa 100% | 37.4 KiB/s | 10.8 KiB | 00m00s [ 48/155] perl-Errno-0:1.39-527.fc45.aa 100% | 71.6 KiB/s | 14.6 KiB | 00m00s [ 49/155] perl-constant-0:1.33-528.fc45 100% | 239.2 KiB/s | 22.7 KiB | 00m00s [ 50/155] perl-overload-0:1.40-527.fc45 100% | 2.9 MiB/s | 45.2 KiB | 00m00s [ 51/155] perl-DynaLoader-0:1.57-527.fc 100% | 1.7 MiB/s | 25.6 KiB | 00m00s [ 52/155] perl-Encode-4:3.24-527.fc45.a 100% | 30.7 MiB/s | 1.0 MiB | 00m00s [ 53/155] tng-0:1.8.2-24.fc45.aarch64 100% | 1.7 MiB/s | 133.4 KiB | 00m00s [ 54/155] fftw-libs-0:3.3.10-18.fc46.aa 100% | 32.1 KiB/s | 7.3 KiB | 00m00s [ 55/155] emacs-filesystem-1:31.1-1.fc4 100% | 510.9 KiB/s | 8.2 KiB | 00m00s [ 56/155] vim-filesystem-2:9.2.1129-1.f 100% | 576.1 KiB/s | 15.6 KiB | 00m00s [ 57/155] flexiblas-openblas-openmp-0:3 100% | 387.3 KiB/s | 15.9 KiB | 00m00s [ 58/155] flexiblas-openblas-openmp64-0 100% | 884.7 KiB/s | 15.9 KiB | 00m00s [ 59/155] fftw-0:3.3.10-18.fc46.aarch64 100% | 109.8 KiB/s | 39.8 KiB | 00m00s [ 60/155] mpich-0:5.0.2-1.fc46.aarch64 100% | 7.2 MiB/s | 3.2 MiB | 00m00s [ 61/155] cpp-0:16.2.1-2.fc46.1.aarch64 100% | 25.1 MiB/s | 13.3 MiB | 00m01s [ 62/155] glibc-devel-0:2.44.9000-4.fc4 100% | 1.3 MiB/s | 668.3 KiB | 00m01s [ 63/155] libasan-0:16.2.1-2.fc46.1.aar 100% | 1.2 MiB/s | 516.1 KiB | 00m00s [ 64/155] libatomic-0:16.2.1-2.fc46.1.a 100% | 638.7 KiB/s | 55.6 KiB | 00m00s [ 65/155] libubsan-0:16.2.1-2.fc46.1.aa 100% | 2.6 MiB/s | 228.1 KiB | 00m00s [ 66/155] infiniband-diags-0:65.0-5.fc4 100% | 2.7 MiB/s | 340.6 KiB | 00m00s [ 67/155] libibumad-0:65.0-5.fc46.aarch 100% | 251.4 KiB/s | 30.2 KiB | 00m00s [ 68/155] libibverbs-0:65.0-5.fc46.aarc 100% | 3.9 MiB/s | 483.1 KiB | 00m00s [ 69/155] librdmacm-0:65.0-5.fc46.aarch 100% | 1.6 MiB/s | 78.4 KiB | 00m00s [ 70/155] rdma-core-common-0:65.0-5.fc4 100% | 1.2 MiB/s | 18.4 KiB | 00m00s [ 71/155] libfabric-0:2.5.1-3.fc45.aarc 100% | 5.3 MiB/s | 679.4 KiB | 00m00s [ 72/155] openssh-clients-0:10.5p1-1.fc 100% | 5.7 MiB/s | 816.1 KiB | 00m00s [ 73/155] orangefs-0:2.10.1-5.fc45.aarc 100% | 1.9 MiB/s | 582.3 KiB | 00m00s [ 74/155] prrte-0:4.1.0-2.fc46.aarch64 100% | 227.0 KiB/s | 44.3 KiB | 00m00s [ 75/155] ucx-0:1.19.0-4.fc46.aarch64 100% | 2.7 MiB/s | 833.2 KiB | 00m00s [ 76/155] munge-libs-0:0.5.18-3.fc45.aa 100% | 133.7 KiB/s | 20.2 KiB | 00m00s [ 77/155] environment-modules-0:5.7.0-1 100% | 2.0 MiB/s | 402.1 KiB | 00m00s [ 78/155] perl-mro-0:1.30-527.fc45.aarc 100% | 452.2 KiB/s | 28.9 KiB | 00m00s [ 79/155] perl-overloading-0:0.03-527.f 100% | 216.1 KiB/s | 12.5 KiB | 00m00s [ 80/155] perl-Getopt-Long-1:2.58-527.f 100% | 4.1 MiB/s | 63.2 KiB | 00m00s [ 81/155] perl-Getopt-Std-0:1.15-527.fc 100% | 1.0 MiB/s | 15.4 KiB | 00m00s [ 82/155] perl-MIME-Base64-0:3.16-527.f 100% | 1.9 MiB/s | 29.8 KiB | 00m00s [ 83/155] perl-Storable-1:3.41-527.fc45 100% | 6.2 MiB/s | 95.7 KiB | 00m00s [ 84/155] perl-interpreter-4:5.44.0-527 100% | 4.7 MiB/s | 72.8 KiB | 00m00s [ 85/155] perl-parent-1:0.244-527.fc45. 100% | 982.0 KiB/s | 14.7 KiB | 00m00s [ 86/155] fftw-libs-double-0:3.3.10-18. 100% | 3.0 MiB/s | 667.9 KiB | 00m00s [ 87/155] fftw-libs-long-0:3.3.10-18.fc 100% | 2.6 MiB/s | 720.5 KiB | 00m00s [ 88/155] fftw-libs-single-0:3.3.10-18. 100% | 2.0 MiB/s | 691.6 KiB | 00m00s [ 89/155] yaksa-0:0.4-1.fc46.aarch64 100% | 3.8 MiB/s | 784.6 KiB | 00m00s [ 90/155] openblas-openmp-0:0.3.34-1.fc 100% | 12.3 MiB/s | 4.2 MiB | 00m00s [ 91/155] openblas-openmp64-0:0.3.34-1. 100% | 10.1 MiB/s | 4.0 MiB | 00m00s [ 92/155] kernel-headers-0:7.3.0-0.rc6. 100% | 5.5 MiB/s | 1.7 MiB | 00m00s [ 93/155] libxcrypt-devel-0:4.5.2-4.fc4 100% | 225.1 KiB/s | 30.4 KiB | 00m00s [ 94/155] libnl3-0:3.12.0-4.fc45.aarch6 100% | 18.4 MiB/s | 357.1 KiB | 00m00s [ 95/155] libedit-0:3.1-60.20260512cvs. 100% | 4.7 MiB/s | 106.4 KiB | 00m00s [ 96/155] openssh-0:10.5p1-1.fc46.aarch 100% | 18.1 MiB/s | 371.4 KiB | 00m00s [ 97/155] prrte-libs-0:4.1.0-2.fc46.aar 100% | 5.8 MiB/s | 532.1 KiB | 00m00s [ 98/155] less-0:710-1.fc46.aarch64 100% | 2.7 MiB/s | 226.1 KiB | 00m00s [ 99/155] man-db-0:2.13.1-4.fc45.aarch6 100% | 4.2 MiB/s | 1.4 MiB | 00m00s [100/155] procps-ng-0:4.0.7-1.fc46.aarc 100% | 1.1 MiB/s | 395.2 KiB | 00m00s [101/155] python3-0:3.15.0~rc3-2.fc46.a 100% | 78.1 KiB/s | 27.8 KiB | 00m00s [102/155] tcl-1:9.0.3-1.fc45.aarch64 100% | 5.9 MiB/s | 1.2 MiB | 00m00s [103/155] perl-Pod-Usage-4:2.05-527.fc4 100% | 395.9 KiB/s | 40.4 KiB | 00m00s [104/155] perl-Text-ParseWords-0:3.31-5 100% | 158.7 KiB/s | 16.2 KiB | 00m00s [105/155] perl-base-0:2.27-527.fc45.noa 100% | 1.0 MiB/s | 15.9 KiB | 00m00s [106/155] perl-Fcntl-0:1.20-527.fc45.aa 100% | 1.9 MiB/s | 29.5 KiB | 00m00s [107/155] perl-IO-0:1.56-527.fc45.aarch 100% | 2.8 MiB/s | 83.0 KiB | 00m00s [108/155] openblas-0:0.3.34-1.fc45.aarc 100% | 697.4 KiB/s | 48.1 KiB | 00m00s [109/155] groff-base-0:1.24.2-1.fc46.aa 100% | 15.7 MiB/s | 1.2 MiB | 00m00s [110/155] libpipeline-0:1.5.8-5.fc45.aa 100% | 708.4 KiB/s | 58.8 KiB | 00m00s [111/155] libtommath-0:1.3.1~rc1-8.fc45 100% | 463.8 KiB/s | 65.4 KiB | 00m00s [112/155] python3-libs-0:3.15.0~rc3-2.f 100% | 67.8 MiB/s | 10.9 MiB | 00m00s [113/155] perl-Pod-Perldoc-0:3.28.01-52 100% | 636.7 KiB/s | 84.7 KiB | 00m00s [114/155] perl-podlators-1:6.1.1-1.fc46 100% | 8.6 MiB/s | 132.4 KiB | 00m00s [115/155] perl-File-stat-0:1.15-527.fc4 100% | 1.1 MiB/s | 17.2 KiB | 00m00s [116/155] perl-SelectSaver-0:1.03-527.f 100% | 756.1 KiB/s | 11.3 KiB | 00m00s [117/155] perl-Socket-4:2.043-1.fc46.aa 100% | 3.6 MiB/s | 55.4 KiB | 00m00s [118/155] perl-Symbol-0:1.09-527.fc45.n 100% | 992.0 KiB/s | 13.9 KiB | 00m00s [119/155] mpdecimal-0:4.0.1-4.fc45.aarc 100% | 5.8 MiB/s | 95.4 KiB | 00m00s [120/155] python-pip-wheel-0:26.2.1-1.f 100% | 37.3 MiB/s | 1.2 MiB | 00m00s [121/155] tzdata-0:2026e-1.fc46.noarch 100% | 8.9 MiB/s | 713.6 KiB | 00m00s [122/155] perl-File-Temp-1:0.231.200-52 100% | 779.9 KiB/s | 59.3 KiB | 00m00s [123/155] perl-HTTP-Tiny-0:0.096-528.fc 100% | 1.0 MiB/s | 58.4 KiB | 00m00s [124/155] perl-IPC-Open3-0:1.24-527.fc4 100% | 1.5 MiB/s | 23.7 KiB | 00m00s [125/155] perl-Pod-Simple-1:3.48-527.fc 100% | 13.6 MiB/s | 222.0 KiB | 00m00s [126/155] perl-POSIX-0:2.26-527.fc45.aa 100% | 3.2 MiB/s | 96.5 KiB | 00m00s [127/155] perl-Term-ANSIColor-0:5.01-52 100% | 3.1 MiB/s | 47.3 KiB | 00m00s [128/155] perl-Term-Cap-0:1.18-527.fc45 100% | 1.4 MiB/s | 21.7 KiB | 00m00s [129/155] perl-Class-Struct-0:0.68-527. 100% | 1.4 MiB/s | 21.8 KiB | 00m00s [130/155] perl-File-Path-0:2.18-527.fc4 100% | 2.3 MiB/s | 34.8 KiB | 00m00s [131/155] perl-IO-Socket-SSL-0:2.099-2. 100% | 8.0 MiB/s | 236.2 KiB | 00m00s [132/155] perl-Net-SSLeay-0:1.96-5.fc45 100% | 21.8 MiB/s | 378.8 KiB | 00m00s [133/155] perl-Time-HiRes-4:1.9780-527. 100% | 3.3 MiB/s | 57.2 KiB | 00m00s [134/155] perl-Time-Local-2:1.350-527.f 100% | 2.2 MiB/s | 34.2 KiB | 00m00s [135/155] perl-Pod-Escapes-1:1.07-527.f 100% | 1.3 MiB/s | 19.6 KiB | 00m00s [136/155] perl-Text-Tabs+Wrap-0:2024.00 100% | 1.4 MiB/s | 21.5 KiB | 00m00s [137/155] perl-if-0:0.61.000-527.fc45.n 100% | 912.2 KiB/s | 13.7 KiB | 00m00s [138/155] perl-locale-0:1.13-527.fc45.n 100% | 941.8 KiB/s | 13.2 KiB | 00m00s [139/155] ncurses-0:6.6-3.fc45.aarch64 100% | 14.4 MiB/s | 428.8 KiB | 00m00s [140/155] perl-IO-Socket-IP-0:0.44-527. 100% | 2.6 MiB/s | 42.0 KiB | 00m00s [141/155] perl-URI-0:5.37-1.fc46.noarch 100% | 9.2 MiB/s | 151.0 KiB | 00m00s [142/155] perl-AutoLoader-0:5.74-527.fc 100% | 1.4 MiB/s | 20.9 KiB | 00m00s [143/155] perl-Data-Dumper-0:2.192-528. 100% | 3.6 MiB/s | 55.0 KiB | 00m00s [144/155] perl-MIME-Base32-0:1.303-26.f 100% | 1.3 MiB/s | 20.4 KiB | 00m00s [145/155] perl-Unicode-Normalize-0:1.32 100% | 4.7 MiB/s | 72.1 KiB | 00m00s [146/155] perl-libnet-0:3.15-528.fc45.n 100% | 8.4 MiB/s | 128.3 KiB | 00m00s [147/155] perl-B-0:1.92-527.fc45.aarch6 100% | 6.1 MiB/s | 182.1 KiB | 00m00s [148/155] perl-Digest-MD5-0:2.59-527.fc 100% | 2.3 MiB/s | 35.5 KiB | 00m00s [149/155] perl-FileHandle-0:2.05-527.fc 100% | 1.1 MiB/s | 15.2 KiB | 00m00s [150/155] perl-Digest-0:1.20-527.fc45.n 100% | 1.6 MiB/s | 24.8 KiB | 00m00s [151/155] annobin-plugin-gcc-0:13.32-1. 100% | 12.4 MiB/s | 710.0 KiB | 00m00s [152/155] gcc-plugin-annobin-0:16.2.1-2 100% | 1.0 MiB/s | 59.2 KiB | 00m00s [153/155] annobin-docs-0:13.32-1.fc46.n 100% | 1.8 MiB/s | 87.1 KiB | 00m00s [154/155] cmake-rpm-macros-0:4.3.0-5.fc 100% | 304.9 KiB/s | 13.7 KiB | 00m00s [155/155] ninja-build-0:1.13.2-6.fc45.a 100% | 2.0 MiB/s | 183.7 KiB | 00m00s -------------------------------------------------------------------------------- [155/155] Total 100% | 23.9 MiB/s | 174.2 MiB | 00m07s Running transaction [ 1/157] Verify package files 100% | 274.0 B/s | 155.0 B | 00m01s [ 2/157] Prepare transaction 100% | 1.0 KiB/s | 155.0 B | 00m00s [ 3/157] Installing hwloc-libs-0:2.14. 100% | 358.9 MiB/s | 2.9 MiB | 00m00s [ 4/157] Installing libgfortran-0:16.2 100% | 342.3 MiB/s | 1.7 MiB | 00m00s [ 5/157] Installing rdma-core-common-0 100% | 22.6 MiB/s | 23.2 KiB | 00m00s [ 6/157] Installing cmake-filesystem-0 100% | 4.6 MiB/s | 9.4 KiB | 00m00s [ 7/157] Installing libmpc-0:1.4.1-2.f 100% | 106.7 MiB/s | 218.5 KiB | 00m00s [ 8/157] Installing libnl3-0:3.12.0-4. 100% | 99.3 MiB/s | 1.3 MiB | 00m00s >>> Running sysusers scriptlet: libibverbs-0:65.0-5.fc46.aarch64 >>> Finished sysusers scriptlet: libibverbs-0:65.0-5.fc46.aarch64 >>> Scriptlet output: >>> Creating group 'rdma' with GID 999. >>> [ 9/157] Installing libibverbs-0:65.0- 100% | 198.7 MiB/s | 1.8 MiB | 00m00s [ 10/157] Installing vim-filesystem-2:9 100% | 4.7 MiB/s | 4.8 KiB | 00m00s [ 11/157] Installing librdmacm-0:65.0-5 100% | 101.7 MiB/s | 208.3 KiB | 00m00s [ 12/157] Installing libfabric-0:2.5.1- 100% | 62.4 MiB/s | 1.9 MiB | 00m00s [ 13/157] Installing libibumad-0:65.0-5 100% | 9.6 MiB/s | 68.7 KiB | 00m00s [ 14/157] Installing groff-base-0:1.24. 100% | 93.9 MiB/s | 4.5 MiB | 00m00s [ 15/157] Installing openblas-0:0.3.34- 100% | 136.6 MiB/s | 139.9 KiB | 00m00s [ 16/157] Installing less-0:710-1.fc46. 100% | 20.7 MiB/s | 552.0 KiB | 00m00s [ 17/157] Installing fftw-libs-single-0 100% | 265.4 MiB/s | 1.9 MiB | 00m00s [ 18/157] Installing fftw-libs-long-0:3 100% | 286.8 MiB/s | 2.3 MiB | 00m00s [ 19/157] Installing fftw-libs-double-0 100% | 299.3 MiB/s | 1.8 MiB | 00m00s [ 20/157] Installing emacs-filesystem-1 100% | 1.0 MiB/s | 1.1 KiB | 00m00s [ 21/157] Installing make-1:4.4.1-13.fc 100% | 61.7 MiB/s | 1.9 MiB | 00m00s [ 22/157] Installing expat-0:2.8.3-1.fc 100% | 14.9 MiB/s | 380.4 KiB | 00m00s [ 23/157] Installing fftw-0:3.3.10-18.f 100% | 9.1 MiB/s | 223.3 KiB | 00m00s [ 24/157] Installing fftw-libs-0:3.3.10 100% | 0.0 B/s | 124.0 B | 00m00s [ 25/157] Installing openblas-openmp-0: 100% | 427.4 MiB/s | 22.2 MiB | 00m00s [ 26/157] Installing flexiblas-0:3.5.0- 100% | 38.2 MiB/s | 39.2 KiB | 00m00s [ 27/157] Installing flexiblas-openblas 100% | 66.5 MiB/s | 68.1 KiB | 00m00s [ 28/157] Installing flexiblas-netlib-0 100% | 225.3 MiB/s | 14.2 MiB | 00m00s [ 29/157] Installing openblas-openmp64- 100% | 432.1 MiB/s | 22.0 MiB | 00m00s [ 30/157] Installing flexiblas-openblas 100% | 66.5 MiB/s | 68.1 KiB | 00m00s [ 31/157] Installing flexiblas-netlib64 100% | 222.3 MiB/s | 14.0 MiB | 00m00s [ 32/157] Installing orangefs-0:2.10.1- 100% | 96.7 MiB/s | 3.3 MiB | 00m00s [ 33/157] Installing cpp-0:16.2.1-2.fc4 100% | 268.3 MiB/s | 40.8 MiB | 00m00s [ 34/157] Installing annobin-docs-0:13. 100% | 98.5 MiB/s | 100.8 KiB | 00m00s [ 35/157] Installing ncurses-0:6.6-3.fc 100% | 32.6 MiB/s | 902.4 KiB | 00m00s [ 36/157] Installing perl-Digest-0:1.20 100% | 36.1 MiB/s | 37.0 KiB | 00m00s [ 37/157] Installing perl-Digest-MD5-0: 100% | 103.0 MiB/s | 105.5 KiB | 00m00s [ 38/157] Installing perl-FileHandle-0: 100% | 0.0 B/s | 9.8 KiB | 00m00s [ 39/157] Installing perl-B-0:1.92-527. 100% | 182.6 MiB/s | 560.9 KiB | 00m00s [ 40/157] Installing perl-libnet-0:3.15 100% | 143.4 MiB/s | 293.8 KiB | 00m00s [ 41/157] Installing perl-Data-Dumper-0 100% | 134.2 MiB/s | 137.4 KiB | 00m00s [ 42/157] Installing perl-Unicode-Norma 100% | 257.2 MiB/s | 526.8 KiB | 00m00s [ 43/157] Installing perl-MIME-Base32-0 100% | 31.4 MiB/s | 32.2 KiB | 00m00s [ 44/157] Installing perl-URI-0:5.37-1. 100% | 70.6 MiB/s | 289.2 KiB | 00m00s [ 45/157] Installing perl-AutoLoader-0: 100% | 0.0 B/s | 21.0 KiB | 00m00s [ 46/157] Installing perl-IO-Socket-IP- 100% | 99.9 MiB/s | 102.3 KiB | 00m00s [ 47/157] Installing perl-IO-Socket-SSL 100% | 238.0 MiB/s | 731.0 KiB | 00m00s [ 48/157] Installing perl-Net-SSLeay-0: 100% | 206.0 MiB/s | 1.4 MiB | 00m00s [ 49/157] Installing perl-locale-0:1.13 100% | 0.0 B/s | 6.5 KiB | 00m00s [ 50/157] Installing perl-if-0:0.61.000 100% | 0.0 B/s | 6.2 KiB | 00m00s [ 51/157] Installing perl-Text-Tabs+Wra 100% | 23.3 MiB/s | 23.9 KiB | 00m00s [ 52/157] Installing perl-Pod-Escapes-1 100% | 25.3 MiB/s | 25.9 KiB | 00m00s [ 53/157] Installing perl-Time-Local-2: 100% | 68.9 MiB/s | 70.6 KiB | 00m00s [ 54/157] Installing perl-Time-HiRes-4: 100% | 150.1 MiB/s | 153.7 KiB | 00m00s [ 55/157] Installing perl-File-Path-0:2 100% | 62.9 MiB/s | 64.4 KiB | 00m00s [ 56/157] Installing perl-HTTP-Tiny-0:0 100% | 80.3 MiB/s | 164.5 KiB | 00m00s [ 57/157] Installing perl-Pod-Simple-1: 100% | 187.1 MiB/s | 574.8 KiB | 00m00s [ 58/157] Installing perl-POSIX-0:2.26- 100% | 256.5 MiB/s | 262.7 KiB | 00m00s [ 59/157] Installing perl-IPC-Open3-0:1 100% | 27.8 MiB/s | 28.5 KiB | 00m00s [ 60/157] Installing perl-File-Temp-1:0 100% | 161.6 MiB/s | 165.5 KiB | 00m00s [ 61/157] Installing perl-Class-Struct- 100% | 0.0 B/s | 25.9 KiB | 00m00s [ 62/157] Installing perl-Term-Cap-0:1. 100% | 29.8 MiB/s | 30.6 KiB | 00m00s [ 63/157] Installing perl-Term-ANSIColo 100% | 96.8 MiB/s | 99.1 KiB | 00m00s [ 64/157] Installing perl-Pod-Perldoc-0 100% | 6.6 MiB/s | 169.4 KiB | 00m00s [ 65/157] Installing perl-podlators-1:6 100% | 12.9 MiB/s | 331.1 KiB | 00m00s [ 66/157] Installing perl-File-stat-0:1 100% | 13.9 MiB/s | 14.2 KiB | 00m00s [ 67/157] Installing perl-Symbol-0:1.09 100% | 0.0 B/s | 7.3 KiB | 00m00s [ 68/157] Installing perl-SelectSaver-0 100% | 0.0 B/s | 2.5 KiB | 00m00s [ 69/157] Installing perl-Socket-4:2.04 100% | 144.4 MiB/s | 147.8 KiB | 00m00s [ 70/157] Installing perl-Pod-Usage-4:2 100% | 3.6 MiB/s | 87.8 KiB | 00m00s [ 71/157] Installing perl-IO-0:1.56-527 100% | 95.5 MiB/s | 195.6 KiB | 00m00s [ 72/157] Installing perl-Fcntl-0:1.20- 100% | 91.6 MiB/s | 93.8 KiB | 00m00s [ 73/157] Installing perl-base-0:2.27-5 100% | 0.0 B/s | 13.0 KiB | 00m00s [ 74/157] Installing perl-Text-ParseWor 100% | 14.2 MiB/s | 14.6 KiB | 00m00s [ 75/157] Installing perl-overloading-0 100% | 5.4 MiB/s | 5.5 KiB | 00m00s [ 76/157] Installing perl-mro-0:1.30-52 100% | 80.7 MiB/s | 82.6 KiB | 00m00s [ 77/157] Installing perl-Getopt-Long-1 100% | 143.8 MiB/s | 147.2 KiB | 00m00s [ 78/157] Installing perl-Storable-1:3. 100% | 119.4 MiB/s | 244.5 KiB | 00m00s [ 79/157] Installing perl-parent-1:0.24 100% | 0.0 B/s | 11.0 KiB | 00m00s [ 80/157] Installing perl-MIME-Base64-0 100% | 93.9 MiB/s | 96.1 KiB | 00m00s [ 81/157] Installing perl-Getopt-Std-0: 100% | 0.0 B/s | 13.0 KiB | 00m00s [ 82/157] Installing perl-overload-0:1. 100% | 70.3 MiB/s | 72.0 KiB | 00m00s [ 83/157] Installing perl-constant-0:1. 100% | 26.8 MiB/s | 27.4 KiB | 00m00s [ 84/157] Installing perl-Errno-0:1.39- 100% | 0.0 B/s | 8.8 KiB | 00m00s [ 85/157] Installing perl-vars-0:1.05-5 100% | 0.0 B/s | 4.3 KiB | 00m00s [ 86/157] Installing perl-Scalar-List-U 100% | 76.5 MiB/s | 156.6 KiB | 00m00s [ 87/157] Installing perl-File-Basename 100% | 0.0 B/s | 14.6 KiB | 00m00s [ 88/157] Installing perl-Carp-0:1.54-5 100% | 46.6 MiB/s | 47.7 KiB | 00m00s [ 89/157] Installing perl-Encode-4:3.24 100% | 130.9 MiB/s | 4.8 MiB | 00m00s [ 90/157] Installing perl-DynaLoader-0: 100% | 31.7 MiB/s | 32.5 KiB | 00m00s [ 91/157] Installing perl-PathTools-0:3 100% | 111.6 MiB/s | 228.6 KiB | 00m00s [ 92/157] Installing perl-Exporter-0:5. 100% | 18.1 MiB/s | 55.5 KiB | 00m00s [ 93/157] Installing perl-libs-4:5.44.0 100% | 229.5 MiB/s | 12.2 MiB | 00m00s [ 94/157] Installing perl-interpreter-4 100% | 6.9 MiB/s | 177.5 KiB | 00m00s [ 95/157] Installing infiniband-diags-0 100% | 53.1 MiB/s | 1.6 MiB | 00m00s [ 96/157] Installing rdma-core-devel-0: 100% | 42.2 MiB/s | 734.9 KiB | 00m00s [ 97/157] Installing tzdata-0:2026e-1.f 100% | 31.8 MiB/s | 1.5 MiB | 00m00s [ 98/157] Installing python-pip-wheel-0 100% | 422.7 MiB/s | 1.3 MiB | 00m00s [ 99/157] Installing mpdecimal-0:4.0.1- 100% | 34.5 MiB/s | 282.7 KiB | 00m00s [100/157] Installing python3-libs-0:3.1 100% | 266.0 MiB/s | 50.3 MiB | 00m00s [101/157] Installing python3-0:3.15.0~r 100% | 3.5 MiB/s | 86.5 KiB | 00m00s [102/157] Installing ninja-build-0:1.13 100% | 17.7 MiB/s | 471.9 KiB | 00m00s [103/157] Installing cmake-rpm-macros-0 100% | 8.8 MiB/s | 9.0 KiB | 00m00s [104/157] Installing libtommath-0:1.3.1 100% | 66.2 MiB/s | 135.5 KiB | 00m00s [105/157] Installing tcl-1:9.0.3-1.fc45 100% | 106.6 MiB/s | 4.4 MiB | 00m00s [106/157] Installing libpipeline-0:1.5. 100% | 13.0 MiB/s | 146.5 KiB | 00m00s [107/157] Installing man-db-0:2.13.1-4. 100% | 67.5 MiB/s | 3.3 MiB | 00m00s [108/157] Installing procps-ng-0:4.0.7- 100% | 57.0 MiB/s | 1.8 MiB | 00m00s [109/157] Installing environment-module 100% | 41.4 MiB/s | 1.6 MiB | 00m00s [110/157] Installing rpm-mpi-hooks-0:8- 100% | 9.5 MiB/s | 9.7 KiB | 00m00s [111/157] Installing openssh-0:10.5p1-1 100% | 56.6 MiB/s | 1.6 MiB | 00m00s [112/157] Installing libedit-0:3.1-60.2 100% | 137.7 MiB/s | 282.0 KiB | 00m00s [113/157] Installing openssh-clients-0: 100% | 67.7 MiB/s | 2.6 MiB | 00m00s [114/157] Installing kernel-headers-0:7 100% | 147.7 MiB/s | 7.1 MiB | 00m00s [115/157] Installing glibc-devel-0:2.44 100% | 124.8 MiB/s | 2.4 MiB | 00m00s [116/157] Installing libxcrypt-devel-0: 100% | 32.5 MiB/s | 33.3 KiB | 00m00s [117/157] Installing yaksa-0:0.4-1.fc46 100% | 420.2 MiB/s | 5.0 MiB | 00m00s [118/157] Installing mpich-0:5.0.2-1.fc 100% | 349.5 MiB/s | 13.3 MiB | 00m00s [119/157] Installing munge-libs-0:0.5.1 100% | 67.0 MiB/s | 68.6 KiB | 00m00s [120/157] Installing pmix-0:6.1.0-1.fc4 100% | 281.3 MiB/s | 2.3 MiB | 00m00s [121/157] Installing prrte-libs-0:4.1.0 100% | 224.8 MiB/s | 1.6 MiB | 00m00s [122/157] Installing prrte-0:4.1.0-2.fc 100% | 173.9 MiB/s | 356.2 KiB | 00m00s [123/157] Installing ucx-0:1.19.0-4.fc4 100% | 80.3 MiB/s | 2.7 MiB | 00m00s [124/157] Installing openmpi-0:5.0.11-1 100% | 313.3 MiB/s | 7.2 MiB | 00m00s [125/157] Installing libubsan-0:16.2.1- 100% | 232.8 MiB/s | 476.7 KiB | 00m00s [126/157] Installing libatomic-0:16.2.1 100% | 77.0 MiB/s | 78.8 KiB | 00m00s [127/157] Installing libasan-0:16.2.1-2 100% | 256.9 MiB/s | 1.5 MiB | 00m00s [128/157] Installing gcc-0:16.2.1-2.fc4 100% | 319.7 MiB/s | 112.5 MiB | 00m00s [129/157] Installing gcc-gfortran-0:16. 100% | 266.1 MiB/s | 43.1 MiB | 00m00s [130/157] Installing tng-0:1.8.2-24.fc4 100% | 170.9 MiB/s | 349.9 KiB | 00m00s [131/157] Installing ocl-icd-0:2.3.5-1. 100% | 139.7 MiB/s | 286.0 KiB | 00m00s [132/157] Installing muParser-0:2.3.5-6 100% | 180.4 MiB/s | 554.2 KiB | 00m00s [133/157] Installing lmfit-0:11.0-1.fc4 100% | 77.8 MiB/s | 79.6 KiB | 00m00s [134/157] Installing gsl-0:2.8-4.fc45.a 100% | 93.7 MiB/s | 3.4 MiB | 00m00s [135/157] Installing libstdc++-devel-0: 100% | 393.4 MiB/s | 40.5 MiB | 00m00s [136/157] Installing rhash-0:1.4.5-5.fc 100% | 15.0 MiB/s | 399.9 KiB | 00m00s [137/157] Installing libuv-1:1.52.1-2.f 100% | 201.6 MiB/s | 619.3 KiB | 00m00s [138/157] Installing jsoncpp-0:1.9.6-3. 100% | 133.4 MiB/s | 273.3 KiB | 00m00s [139/157] Installing cmake-0:4.3.0-5.fc 100% | 248.6 MiB/s | 32.8 MiB | 00m00s [140/157] Installing cmake-data-0:4.3.0 100% | 81.2 MiB/s | 10.1 MiB | 00m00s [141/157] Installing opencl-headers-0:3 100% | 387.5 MiB/s | 793.7 KiB | 00m00s [142/157] Installing ocl-icd-devel-0:2. 100% | 13.2 MiB/s | 338.4 KiB | 00m00s [143/157] Installing gcc-c++-0:16.2.1-2 100% | 271.6 MiB/s | 44.8 MiB | 00m00s [144/157] Installing gsl-devel-0:2.8-4. 100% | 52.1 MiB/s | 1.7 MiB | 00m00s [145/157] Installing lmfit-devel-0:11.0 100% | 79.0 MiB/s | 161.9 KiB | 00m00s [146/157] Installing muParser-devel-0:2 100% | 127.1 MiB/s | 130.2 KiB | 00m00s [147/157] Installing tng-devel-0:1.8.2- 100% | 77.7 MiB/s | 238.8 KiB | 00m00s [148/157] Installing openmpi-devel-0:5. 100% | 107.9 MiB/s | 3.3 MiB | 00m00s [149/157] Installing mpich-devel-0:5.0. 100% | 91.5 MiB/s | 2.5 MiB | 00m00s [150/157] Installing annobin-plugin-gcc 100% | 51.5 MiB/s | 738.3 KiB | 00m00s [151/157] Installing gcc-plugin-annobin 100% | 4.1 MiB/s | 70.7 KiB | 00m00s [152/157] Installing hwloc-devel-0:2.14 100% | 72.4 MiB/s | 741.7 KiB | 00m00s [153/157] Installing perl-File-Copy-0:2 100% | 19.7 MiB/s | 20.2 KiB | 00m00s [154/157] Installing perl-lib-0:0.65-52 100% | 8.7 MiB/s | 8.9 KiB | 00m00s [155/157] Installing flexiblas-devel-0: 100% | 171.1 MiB/s | 6.0 MiB | 00m00s [156/157] Installing fftw-devel-0:3.3.1 100% | 140.4 MiB/s | 287.5 KiB | 00m00s [157/157] Installing hwloc-0:2.14.0-3.f 100% | 3.3 MiB/s | 785.5 KiB | 00m00s Warning: skipped OpenPGP checks for 8 packages from repository: copr_base Complete! Building target platforms: aarch64 Building for target aarch64 setting SOURCE_DATE_EPOCH=1786752000 Wrote: /builddir/build/SRPMS/gromacs-2026.3-1.fc46.src.rpm Updating and loading repositories: fedora 100% | 33.3 KiB/s | 9.7 KiB | 00m00s Copr repository 100% | 10.1 KiB/s | 1.5 KiB | 00m00s Repositories loaded. Package "cmake-4.3.0-5.fc45.aarch64" is already installed. Package "fftw-devel-3.3.10-18.fc46.aarch64" is already installed. Package "flexiblas-devel-3.5.0-4.fc46.aarch64" is already installed. Package "gcc-c++-16.2.1-2.fc46.1.aarch64" is already installed. Package "gsl-devel-2.8-4.fc45.aarch64" is already installed. Package "hwloc-2.14.0-3.fc46.aarch64" is already installed. Package "hwloc-devel-2.14.0-3.fc46.aarch64" is already installed. Package "lmfit-devel-11.0-1.fc46.aarch64" is already installed. Package "mpich-devel-5.0.2-1.fc46.aarch64" is already installed. Package "muParser-devel-2.3.5-6.fc45.aarch64" is already installed. Package "ocl-icd-devel-2.3.5-1.fc45.aarch64" is already installed. Package "opencl-headers-3.1-1.20260512git6fe718c.fc45.noarch" is already installed. Package "openmpi-devel-5.0.11-1.fc46.aarch64" is already installed. Package "perl-Carp-1.54-527.fc45.noarch" is already installed. Package "perl-PathTools-3.95-527.fc45.aarch64" is already installed. Package "perl-Exporter-5.79-527.fc45.noarch" is already installed. Package "perl-File-Basename-2.86-527.fc45.noarch" is already installed. Package "perl-File-Copy-2.43-527.fc45.noarch" is already installed. Package "perl-PathTools-3.95-527.fc45.aarch64" is already installed. Package "perl-Scalar-List-Utils-5:1.70-527.fc45.aarch64" is already installed. Package "perl-lib-0.65-527.fc45.aarch64" is already installed. Package "perl-libs-4:5.44.0-527.fc45.aarch64" is already installed. Package "perl-vars-1.05-527.fc45.noarch" is already installed. Package "tng-devel-1.8.2-24.fc45.aarch64" is already installed. Nothing to do. Finish: build setup for gromacs-2026.3-1.fc46.src.rpm Start: rpmbuild gromacs-2026.3-1.fc46.src.rpm Building target platforms: aarch64 Building for target aarch64 setting SOURCE_DATE_EPOCH=1786752000 Executing(mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.yO3E6z Creating(rpmbuild.env): /builddir/build/BUILD/gromacs-2026.3-build/rpmbuild.env RPM_SOURCE_DIR="/builddir/build/SOURCES" RPM_BUILD_DIR="/builddir/build/BUILD/gromacs-2026.3-build" RPM_OPT_FLAGS="-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer" RPM_LD_FLAGS="-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes " RPM_ARCH="aarch64" RPM_OS="linux" RPM_BUILD_NCPUS="32" RPM_SPECPARTS_DIR="/builddir/build/BUILD/gromacs-2026.3-build/SPECPARTS" export RPM_SOURCE_DIR RPM_BUILD_DIR RPM_OPT_FLAGS RPM_ARCH RPM_OS RPM_BUILD_NCPUS RPM_SPECPARTS_DIR RPM_LD_FLAGS RPM_DOC_DIR="/usr/share/doc" export RPM_DOC_DIR RPM_PACKAGE_NAME="gromacs" RPM_PACKAGE_VERSION="2026.3" RPM_PACKAGE_RELEASE="1.fc46" export RPM_PACKAGE_NAME RPM_PACKAGE_VERSION RPM_PACKAGE_RELEASE LANG=C.UTF-8 export LANG unset CDPATH DISPLAY ||: unset DEBUGINFOD_URLS ||: unset RPM_CONFIG_DIR ||: RPM_BUILD_ROOT="/builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT" export RPM_BUILD_ROOT PKG_CONFIG_PATH="${PKG_CONFIG_PATH}:/usr/lib64/pkgconfig:/usr/share/pkgconfig" export PKG_CONFIG_PATH CONFIG_SITE=${CONFIG_SITE:-NONE} export CONFIG_SITE Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.QV1mqm + umask 022 + cd /builddir/build/BUILD/gromacs-2026.3-build + cd /builddir/build/BUILD/gromacs-2026.3-build + rm -rf gromacs-2026.3 + /usr/bin/rpmuncompress -x /builddir/build/SOURCES/gromacs-2026.3.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd gromacs-2026.3 + /usr/bin/rpmuncompress -x /builddir/build/SOURCES/regressiontests-2026.3.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + install -Dpm644 /builddir/build/SOURCES/manual-2026.3.pdf ./serial/docs/manual/gromacs.pdf + rm -r src/external/build-fftw src/external/fftpack src/external/lmfit src/external/muparser src/external/tng_io + sed -i 's/set(_timeout [0-9]*)/set(_timeout 9000)/' src/testutils/TestMacros.cmake + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.scoi1M + umask 022 + cd /builddir/build/BUILD/gromacs-2026.3-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd gromacs-2026.3 + . /etc/profile.d/modules.sh ++ '[' -n /bin/sh ']' ++ '[' sh = sh ']' ++ shell=sh ++ '[' -f /usr/share/Modules/init/sh ']' ++ . /usr/share/Modules/init/sh +++ unset _mlshdbg +++ '[' 0 = 1 ']' +++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD' +++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD' +++ unset _mlre _mlIFS +++ '[' -n x ']' +++ _mlIFS=$' \t\n' +++ IFS=' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' ++++ eval 'echo ${LD_LIBRARY_PATH+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH ++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}' +++++ echo +++ _mlre='LD_LIBRARY_PATH='\'''\'' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_PRELOAD = LD_PRELOAD ']' +++ '[' LD_PRELOAD = LD_PRELOAD ']' ++++ eval 'echo ${LD_PRELOAD+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_PRELOAD ++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}' +++++ echo +++ _mlre='LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' +++ '[' -n 'LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']' +++ _mlre='eval LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 ' ++++ eval 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++++ LD_LIBRARY_PATH= +++++ LD_PRELOAD= +++++ __MODULES_QUARANTINE_SET=1 +++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++ _mlcode=$'_module_raw() {\n eval "$(/usr/bin/tclsh \'/usr/share/Modules/libexec/modulecmd.tcl\' sh "$@")";\n _mlstatus=$?;\n return $_mlstatus;\n};\nmodule() {\n local _mlredir=0;\n if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then\n if [ "$MODULES_REDIRECT_OUTPUT" = \'0\' ]; then\n _mlredir=0;\n elif [ "$MODULES_REDIRECT_OUTPUT" = \'1\' ]; then\n _mlredir=1;\n fi;\n fi;\n case " $@ " in\n *\' --no-redirect \'*) _mlredir=0 ;;\n *\' --redirect \'*) _mlredir=1 ;;\n esac;\n if [ $_mlredir -eq 0 ]; then\n _module_raw "$@";\n else\n _module_raw "$@" 2>&1;\n fi;\n};\nml() { module ml "$@"; };\nMODULES_CMD=\'/usr/share/Modules/libexec/modulecmd.tcl\'; export MODULES_CMD;\nunset __MODULES_AUTOINIT_INPROGRESS;\nMODULESHOME=\'/usr/share/Modules\'; export MODULESHOME;\ntest 0;' +++ _mlret=0 +++ '[' -n x ']' +++ IFS=$' \t\n' +++ unset _mlIFS +++ unset _mlre _mlv _mlrv +++ '[' 0 -eq 0 ']' +++ eval $'_module_raw() {\n eval "$(/usr/bin/tclsh \'/usr/share/Modules/libexec/modulecmd.tcl\' sh "$@")";\n _mlstatus=$?;\n return $_mlstatus;\n};\nmodule() {\n local _mlredir=0;\n if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then\n if [ "$MODULES_REDIRECT_OUTPUT" = \'0\' ]; then\n _mlredir=0;\n elif [ "$MODULES_REDIRECT_OUTPUT" = \'1\' ]; then\n _mlredir=1;\n fi;\n fi;\n case " $@ " in\n *\' --no-redirect \'*) _mlredir=0 ;;\n *\' --redirect \'*) _mlredir=1 ;;\n esac;\n if [ $_mlredir -eq 0 ]; then\n _module_raw "$@";\n else\n _module_raw "$@" 2>&1;\n fi;\n};\nml() { module ml "$@"; };\nMODULES_CMD=\'/usr/share/Modules/libexec/modulecmd.tcl\'; export MODULES_CMD;\nunset __MODULES_AUTOINIT_INPROGRESS;\nMODULESHOME=\'/usr/share/Modules\'; export MODULESHOME;\ntest 0;' ++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl ++++ export MODULES_CMD ++++ unset __MODULES_AUTOINIT_INPROGRESS ++++ MODULESHOME=/usr/share/Modules ++++ export MODULESHOME ++++ test 0 +++ '[' /bin/sh '!=' '' ']' +++ export -f _module_raw +++ export -f module ++++ type -t ml +++ '[' function = function ']' +++ export -f ml +++ unset _mlcode _mlret +++ '[' -n '' ']' + for p in '' _d + for mpi in '' mpich openmpi + test -n '' + mkdir -p serial + pushd serial ~/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial ~/build/BUILD/gromacs-2026.3-build/gromacs-2026.3 + test -z '' + cp -al ../regressiontests-2026.3 tests/ + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX ++ test -n '' ++ test -z '' ++ echo -DREGRESSIONTEST_PATH=/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/tests ++ test -n '' ++ echo -DGMX_GPU=OpenCL + /usr/bin/cmake -S .. -B redhat-linux-build -G Ninja -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DCMAKE_INSTALL_FULL_SBINDIR:PATH=/usr/bin -DCMAKE_INSTALL_SBINDIR:PATH=bin -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -DBUILD_TESTING:BOOL=ON -DCMAKE_SKIP_INSTALL_RPATH=ON -DGMX_BLAS_USER=flexiblas -DGMX_BUILD_UNITTESTS:BOOL=ON -DGMX_USE_LMFIT=EXTERNAL -DGMX_EXTERNAL_TNG:BOOL=ON -DGMX_EXTERNAL_TINYXML2:BOOL=OFF -DGMX_USE_MUPARSER=EXTERNAL -DGMX_LAPACK_USER=flexiblas -DGMX_USE_RDTSCP=OFF -DGMX_INSTALL_LEGACY_API=ON -DGMX_VERSION_STRING_OF_FORK=Fedora46 -DGMX_SIMD=ARM_NEON_ASIMD -DREGRESSIONTEST_PATH=/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/tests -DGMX_GPU=OpenCL -- The C compiler identification is GNU 16.2.1 -- The CXX compiler identification is GNU 16.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Could NOT find Python3 (missing: Python3_INCLUDE_DIRS Python3_LIBRARIES Development Development.Module Development.Embed) (found suitable version "3.15.0", minimum required is "3.9") -- Selected GPU FFT library - clFFT -- Found OpenMP_CXX: -fopenmp (found version "5.2") -- Found OpenMP: TRUE (found version "5.2") found components: CXX -- Performing Test CFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS -- Performing Test CFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS - Success -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS -- Performing Test CXXFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Looking for include file unistd.h -- Looking for include file unistd.h - found -- Looking for include file pwd.h -- Looking for include file pwd.h - found -- Looking for include file dirent.h -- Looking for include file dirent.h - found -- Looking for include file time.h -- Looking for include file time.h - found -- Looking for include file sys/time.h -- Looking for include file sys/time.h - found -- Looking for include file io.h -- Looking for include file io.h - not found -- Looking for include file sched.h -- Looking for include file sched.h - found -- Looking for include file xmmintrin.h -- Looking for include file xmmintrin.h - not found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for sysconf -- Looking for sysconf - found -- Looking for nice -- Looking for nice - found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sigaction -- Looking for sigaction - found -- Performing Test HAVE_BUILTIN_CLZ -- Performing Test HAVE_BUILTIN_CLZ - Success -- Performing Test HAVE_BUILTIN_CLZLL -- Performing Test HAVE_BUILTIN_CLZLL - Success -- Looking for clock_gettime in rt -- Looking for clock_gettime in rt - found -- Looking for feenableexcept in m -- Looking for feenableexcept in m - found -- Looking for fedisableexcept in m -- Looking for fedisableexcept in m - found -- Checking for sched.h GNU affinity API -- Performing Test sched_affinity_compile -- Performing Test sched_affinity_compile - Success -- Looking for include file mm_malloc.h -- Looking for include file mm_malloc.h - not found -- Looking for include file malloc.h -- Looking for include file malloc.h - found -- Checking for _mm_malloc() -- Checking for _mm_malloc() - not supported -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - not found -- GROMACS is being built without library MPI support (-DGMX_MPI=no). However MPI is potentially useful for the gmxapi Python API, so we will search for MPI anyway. If this causes problems, disable the check with -DCMAKE_DISABLE_FIND_PACKAGE_MPI=on. -- Checking for module 'mpi-cxx' -- Package 'mpi-cxx' not found -- Could NOT find MPI_CXX (missing: MPI_CXX_LIB_NAMES MPI_CXX_HEADER_DIR MPI_CXX_WORKS) -- Could NOT find MPI (missing: MPI_CXX_FOUND CXX) -- Performing Test HAS_WARNING_NO_OLD_STYLE_CAST -- Performing Test HAS_WARNING_NO_OLD_STYLE_CAST - Success -- Performing Test HAS_WARNING_NO_CAST_QUAL -- Performing Test HAS_WARNING_NO_CAST_QUAL - Success -- Performing Test HAS_WARNING_NO_SUGGEST_OVERRIDE -- Performing Test HAS_WARNING_NO_SUGGEST_OVERRIDE - Success -- Performing Test HAS_WARNING_NO_SUGGEST_DESTRUCTOR_OVERRIDE -- Performing Test HAS_WARNING_NO_SUGGEST_DESTRUCTOR_OVERRIDE - Success -- Performing Test HAS_WARNING_NO_ZERO_AS_NULL_POINTER_CONSTANT -- Performing Test HAS_WARNING_NO_ZERO_AS_NULL_POINTER_CONSTANT - Success -- Using default binary suffix: "" -- Using default library suffix: "" -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Looking for C++ include pthread.h -- Looking for C++ include pthread.h - found -- Performing Test TEST_ATOMICS -- Performing Test TEST_ATOMICS - Success -- Atomic operations found -- Performing Test PTHREAD_SETAFFINITY -- Performing Test PTHREAD_SETAFFINITY - Success -- Performing Test C_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS -- Performing Test C_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS - Success -- Performing Test CXX_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS -- Performing Test CXX_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS - Success -- Enabling ARM (AArch64) NEON Advanced SIMD instructions using CXX flags: -- Performing Test _callconv___vectorcall -- Performing Test _callconv___vectorcall - Failed -- Performing Test _callconv___regcall -- Performing Test _callconv___regcall - Failed -- Performing Test _callconv_ -- Performing Test _callconv_ - Success -- GPU support with OpenCL is deprecated. It is still fully supported (and recommended for Apple GPUs). Please use CUDA for running on NVIDIA GPUs and SYCL for running on Intel GPUs, and HIP or SYCL on AMD GPUs. -- Looking for include file OpenCL/cl.h -- Looking for include file OpenCL/cl.h - not found -- Looking for CL_VERSION_3_0 -- Looking for CL_VERSION_3_0 - found -- Found OpenCL: /usr/lib64/libOpenCL.so (found version "3.0") -- Torch not found. Neural network potential support will be disabled. -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - not supported -- Detected build CPU vendor - ARM -- Detected build CPU brand - 0xd40 -- Detected build CPU family - 8 -- Detected build CPU model - 1 -- Detected build CPU stepping - 1 -- Detected build CPU features - neon neon_asimd sve -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present -- Checking for fseeko/ftello -- Checking for fseeko/ftello - present -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for pipe support -- Checking for system XDR support -- Checking for system XDR support - not present -- Checking for module 'fftw3f' -- Found fftw3f, version 3.3.10 -- Looking for fftwf_plan_many_dft in /usr/lib64/libfftw3f.so -- Looking for fftwf_plan_many_dft in /usr/lib64/libfftw3f.so - found -- Looking for fftwf_plan_many_dft_r2c in /usr/lib64/libfftw3f.so -- Looking for fftwf_plan_many_dft_r2c in /usr/lib64/libfftw3f.so - found -- Looking for fftwf_plan_many_dft_c2r in /usr/lib64/libfftw3f.so -- Looking for fftwf_plan_many_dft_c2r in /usr/lib64/libfftw3f.so - found -- Looking for fftwf_have_simd_sse in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_sse in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_sse in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_sse in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_sse2 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_sse2 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_sse2 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_sse2 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx2 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx2 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx2_128 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx2_128 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx512 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx512 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx_128_fma in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx_128_fma in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx_512 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx_512 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_kcvi in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_kcvi in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_altivec in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_altivec in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_neon in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_neon in /usr/lib64/libfftw3f.so - found -- Using external FFT library - FFTW3 -- Checking that user BLAS library flexiblas works -- Looking for dgemm_ -- Looking for dgemm_ - found -- Checking that user LAPACK library flexiblas works -- Looking for cheev_ -- Looking for cheev_ - found -- No image conversion possible without ImageMagick -- Performing Test HAS_WARNING_EVERYTHING -- Performing Test HAS_WARNING_EVERYTHING - Failed -- Performing Test HAVE_NO_DEPRECATED_COPY -- Performing Test HAVE_NO_DEPRECATED_COPY - Success -- Looking for open_memstream -- Looking for open_memstream - found -- Looking for dlopen -- Looking for dlopen - found -- Performing Test HAS_NO_STRINGOP_TRUNCATION -- Performing Test HAS_NO_STRINGOP_TRUNCATION - Success -- Could NOT find HDF5 (missing: HDF5_LIBRARIES HDF5_INCLUDE_DIRS C) (Required is at least version "1.10.7") -- Performing Test HAS_WARNING_NO_CAST_FUNCTION_TYPE_STRICT -- Performing Test HAS_WARNING_NO_CAST_FUNCTION_TYPE_STRICT - Success -- Performing Test HAS_NO_UNUSED -- Performing Test HAS_NO_UNUSED - Success -- Performing Test HAS_NO_UNUSED_PARAMETER -- Performing Test HAS_NO_UNUSED_PARAMETER - Success -- Performing Test HAS_NO_MISSING_DECLARATIONS -- Performing Test HAS_NO_MISSING_DECLARATIONS - Success -- Performing Test HAS_NO_NULL_CONVERSIONS -- Performing Test HAS_NO_NULL_CONVERSIONS - Success -- Could NOT find clFFT (missing: clFFT_INCLUDE_DIR clFFT_LIBRARY) -- Performing Test LMFIT_LINKS_OK -- Performing Test LMFIT_LINKS_OK - Success -- Found Lmfit: /usr/include (found suitable version "11.0.0", minimum required is "7.0") -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success -- Performing Test COMPILER_HAS_DEPRECATED_ATTR -- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success -- Could NOT find Sphinx (missing: SPHINX_EXECUTABLE pygments) (Required is at least version "4.0.0") -- Could NOT find LATEX (missing: LATEX_COMPILER) -- Configuring done (19.0s) -- Generating done (0.4s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_Fortran_FLAGS_RELEASE CMAKE_INSTALL_DO_STRIP CMAKE_VERBOSE_MAKEFILE INCLUDE_INSTALL_DIR LIB_INSTALL_DIR LIB_SUFFIX SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build + /usr/bin/cmake --build redhat-linux-build -j32 --verbose Change Dir: '/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build' Run Build Command(s): /usr/bin/ninja-build -v -j 32 [1/1040] cd /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3.15 -D PROJECT_VERSION=2026.3-Fedora46 -D PROJECT_SOURCE_DIR=/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3 -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Fedora46 -P /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/cmake/gmxGenerateVersionInfoWithoutGit.cmake [2/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o -MF src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o.d -o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/src/atomic.cpp [3/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -MD -MT src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr_float.cpp.o -MF src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr_float.cpp.o.d -o src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr_float.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/rpc_xdr/xdr_float.cpp /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/rpc_xdr/xdr_float.cpp: In function ‘bool_t xdr_double(XDR*, double*)’: /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/rpc_xdr/xdr_float.cpp:223:17: warning: unused variable ‘ip’ [-Wunused-variable] 223 | int* ip; | ^~ /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/rpc_xdr/xdr_float.cpp:224:17: warning: unused variable ‘tmp’ [-Wunused-variable] 224 | int32_t tmp[2]; | ^~~ [4/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -MD -MT src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr_array.cpp.o -MF src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr_array.cpp.o.d -o src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr_array.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/rpc_xdr/xdr_array.cpp [5/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/reduce_fast.cpp.o -MF src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/reduce_fast.cpp.o.d -o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/reduce_fast.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/src/reduce_fast.cpp [6/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/barrier.cpp.o -MF src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/barrier.cpp.o.d -o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/barrier.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/src/barrier.cpp [7/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/profile.cpp.o -MF src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/profile.cpp.o.d -o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/profile.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/src/profile.cpp [8/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -MF src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o.d -o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/src/tmpi_malloc.cpp [9/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/numa_malloc.cpp.o -MF src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/numa_malloc.cpp.o.d -o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/numa_malloc.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/src/numa_malloc.cpp [10/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/event.cpp.o -MF src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/event.cpp.o.d -o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/event.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/src/event.cpp [11/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/bcast.cpp.o -MF src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/bcast.cpp.o.d -o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/bcast.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/src/bcast.cpp [12/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o -MF src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o.d -o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/src/lock.cpp [13/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/list.cpp.o -MF src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/list.cpp.o.d -o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/list.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/src/list.cpp [14/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -MD -MT src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr_stdio.cpp.o -MF src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr_stdio.cpp.o.d -o src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr_stdio.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/rpc_xdr/xdr_stdio.cpp [15/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/scan.cpp.o -MF src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/scan.cpp.o.d -o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/scan.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/src/scan.cpp [16/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o -MF src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o.d -o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/src/errhandler.cpp [17/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/once.cpp.o -MF src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/once.cpp.o.d -o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/once.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/src/once.cpp [18/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_send_recv.cpp.o -MF src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_send_recv.cpp.o.d -o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_send_recv.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/src/p2p_send_recv.cpp [19/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/gather.cpp.o -MF src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/gather.cpp.o.d -o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/gather.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/src/gather.cpp [20/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/reduce.cpp.o -MF src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/reduce.cpp.o.d -o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/reduce.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/src/reduce.cpp [21/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/scatter.cpp.o -MF src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/scatter.cpp.o.d -o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/scatter.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/src/scatter.cpp [22/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/alltoall.cpp.o -MF src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/alltoall.cpp.o.d -o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/alltoall.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/src/alltoall.cpp [23/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/group.cpp.o -MF src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/group.cpp.o.d -o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/group.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/src/group.cpp [24/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -MD -MT src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr.cpp.o -MF src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr.cpp.o.d -o src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/rpc_xdr/xdr.cpp [25/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/collective.cpp.o -MF src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/collective.cpp.o.d -o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/collective.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/src/collective.cpp [26/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/topology.cpp.o -MF src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/topology.cpp.o.d -o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/topology.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/src/topology.cpp [27/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_wait.cpp.o -MF src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_wait.cpp.o.d -o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_wait.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/src/p2p_wait.cpp [28/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o -MF src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o.d -o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/src/pthreads.cpp [29/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_init.cpp.o -MF src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_init.cpp.o.d -o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_init.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/src/tmpi_init.cpp [30/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_protocol.cpp.o -MF src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_protocol.cpp.o.d -o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_protocol.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/src/p2p_protocol.cpp [31/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/comm.cpp.o -MF src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/comm.cpp.o.d -o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/comm.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/src/comm.cpp [32/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_torchann.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_torchann.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_torchann.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarcomp_torchann.cpp [33/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_volmaps.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_volmaps.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_volmaps.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarcomp_volmaps.cpp [34/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_alchlambda.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_alchlambda.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_alchlambda.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarcomp_alchlambda.cpp [35/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abmd.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abmd.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abmd.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarbias_abmd.cpp [36/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/type.cpp.o -MF src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/type.cpp.o.d -o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/type.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/src/type.cpp [37/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparams.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparams.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparams.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarparams.cpp [38/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_replicas.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_replicas.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_replicas.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarproxy_replicas.cpp [39/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_angles.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_angles.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_angles.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarcomp_angles.cpp [40/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_volmaps.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_volmaps.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_volmaps.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarproxy_volmaps.cpp [41/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_combination.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_combination.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_combination.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarcomp_combination.cpp [42/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_rotations.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_rotations.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_rotations.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarcomp_rotations.cpp [43/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_system.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_system.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_system.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarproxy_system.cpp [44/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_alb.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_alb.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_alb.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarbias_alb.cpp [45/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_tcl.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_tcl.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_tcl.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarproxy_tcl.cpp [46/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar_neuralnetworkcompute.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar_neuralnetworkcompute.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar_neuralnetworkcompute.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvar_neuralnetworkcompute.cpp [47/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvars_memstream.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvars_memstream.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvars_memstream.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvars_memstream.cpp [48/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarbias_histogram.cpp [49/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvardeps.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvardeps.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvardeps.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvardeps.cpp [50/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_neuralnetwork.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_neuralnetwork.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_neuralnetwork.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarcomp_neuralnetwork.cpp [51/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_protein.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_protein.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_protein.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarcomp_protein.cpp [52/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram_reweight_amd.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram_reweight_amd.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram_reweight_amd.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarbias_histogram_reweight_amd.cpp [53/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid_integrate.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid_integrate.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid_integrate.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvargrid_integrate.cpp [54/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/nr_jacobi.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/nr_jacobi.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/nr_jacobi.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/nr_jacobi.cpp [55/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_coordnums.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_coordnums.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_coordnums.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarcomp_coordnums.cpp [56/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -DGMX_DESCRIBE_BLAS="External - user-supplied" -DGMX_DESCRIBE_LAPACK="External - user-supplied" -DGMX_FFT_MKL=0 -MD -MT src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/binary_information.cpp.o -MF src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/binary_information.cpp.o.d -o src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/binary_information.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/binary_information.cpp [57/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -MD -MT src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o -MF src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o.d -o src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/sparsematrix.cpp [58/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/fmm/CMakeFiles/fmm.dir/fmmforceprovider_stub.cpp.o -MF src/gromacs/fmm/CMakeFiles/fmm.dir/fmmforceprovider_stub.cpp.o.d -o src/gromacs/fmm/CMakeFiles/fmm.dir/fmmforceprovider_stub.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fmm/fmmforceprovider_stub.cpp [59/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -MD -MT src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/eigensolver.cpp.o -MF src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/eigensolver.cpp.o.d -o src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/eigensolver.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/eigensolver.cpp [60/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_bias.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_bias.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_bias.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarscript_commands_bias.cpp [61/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarcomp.cpp [62/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_io.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_io.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_io.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarproxy_io.cpp [63/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -MD -MT src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/matrix.cpp.o -MF src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/matrix.cpp.o.d -o src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/matrix.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/matrix.cpp [64/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/fmm/CMakeFiles/fmm.dir/fmm_mdpvalidator.cpp.o -MF src/gromacs/fmm/CMakeFiles/fmm.dir/fmm_mdpvalidator.cpp.o.d -o src/gromacs/fmm/CMakeFiles/fmm.dir/fmm_mdpvalidator.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fmm/fmm_mdpvalidator.cpp [65/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/behaviorcollection.cpp.o -MF src/gromacs/options/CMakeFiles/options.dir/behaviorcollection.cpp.o.d -o src/gromacs/options/CMakeFiles/options.dir/behaviorcollection.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/options/behaviorcollection.cpp [66/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/abstractsection.cpp.o -MF src/gromacs/options/CMakeFiles/options.dir/abstractsection.cpp.o.d -o src/gromacs/options/CMakeFiles/options.dir/abstractsection.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/options/abstractsection.cpp [67/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/fmm/CMakeFiles/fmm.dir/fmmforceproviderbuilder.cpp.o -MF src/gromacs/fmm/CMakeFiles/fmm.dir/fmmforceproviderbuilder.cpp.o.d -o src/gromacs/fmm/CMakeFiles/fmm.dir/fmmforceproviderbuilder.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fmm/fmmforceproviderbuilder.cpp [68/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarscript_commands.cpp [69/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_colvar.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_colvar.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_colvar.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarscript_commands_colvar.cpp [70/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/fmm/CMakeFiles/fmm.dir/fmm_mdmodule.cpp.o -MF src/gromacs/fmm/CMakeFiles/fmm.dir/fmm_mdmodule.cpp.o.d -o src/gromacs/fmm/CMakeFiles/fmm.dir/fmm_mdmodule.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fmm/fmm_mdmodule.cpp [71/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/optionsection.cpp.o -MF src/gromacs/options/CMakeFiles/options.dir/optionsection.cpp.o.d -o src/gromacs/options/CMakeFiles/options.dir/optionsection.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/options/optionsection.cpp [72/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_apath.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_apath.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_apath.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarcomp_apath.cpp [73/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_restraint.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_restraint.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_restraint.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarbias_restraint.cpp [74/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarproxy.cpp [75/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/fmm/CMakeFiles/fmm.dir/fmm_mdpoptions.cpp.o -MF src/gromacs/fmm/CMakeFiles/fmm.dir/fmm_mdpoptions.cpp.o.d -o src/gromacs/fmm/CMakeFiles/fmm.dir/fmm_mdpoptions.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fmm/fmm_mdpoptions.cpp [76/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_distances.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_distances.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_distances.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarcomp_distances.cpp [77/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/optionsvisitor.cpp.o -MF src/gromacs/options/CMakeFiles/options.dir/optionsvisitor.cpp.o.d -o src/gromacs/options/CMakeFiles/options.dir/optionsvisitor.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/options/optionsvisitor.cpp [78/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarbias.cpp [79/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvaratoms.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvaratoms.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvaratoms.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvaratoms.cpp [80/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/optionsassigner.cpp.o -MF src/gromacs/options/CMakeFiles/options.dir/optionsassigner.cpp.o.d -o src/gromacs/options/CMakeFiles/options.dir/optionsassigner.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/options/optionsassigner.cpp [81/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/filenameoptionmanager.cpp.o -MF src/gromacs/options/CMakeFiles/options.dir/filenameoptionmanager.cpp.o.d -o src/gromacs/options/CMakeFiles/options.dir/filenameoptionmanager.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/options/filenameoptionmanager.cpp [82/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarvalue.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarvalue.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarvalue.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarvalue.cpp [83/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvartypes.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvartypes.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvartypes.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvartypes.cpp [84/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/timeunitmanager.cpp.o -MF src/gromacs/options/CMakeFiles/options.dir/timeunitmanager.cpp.o.d -o src/gromacs/options/CMakeFiles/options.dir/timeunitmanager.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/options/timeunitmanager.cpp [85/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/reportgpuusage.cpp.o -MF src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/reportgpuusage.cpp.o.d -o src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/reportgpuusage.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/reportgpuusage.cpp [86/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/options.cpp.o -MF src/gromacs/options/CMakeFiles/options.dir/options.cpp.o.d -o src/gromacs/options/CMakeFiles/options.dir/options.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/options/options.cpp [87/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/decidesimulationworkload.cpp.o -MF src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/decidesimulationworkload.cpp.o.d -o src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/decidesimulationworkload.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/decidesimulationworkload.cpp [88/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/findallgputasks.cpp.o -MF src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/findallgputasks.cpp.o.d -o src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/findallgputasks.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/findallgputasks.cpp [89/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -MD -MT src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o -MF src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o.d -o src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/gmx_arpack.cpp [90/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/abstractoption.cpp.o -MF src/gromacs/options/CMakeFiles/options.dir/abstractoption.cpp.o.d -o src/gromacs/options/CMakeFiles/options.dir/abstractoption.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/options/abstractoption.cpp [91/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/fmm/CMakeFiles/fmm.dir/fmmoptions.cpp.o -MF src/gromacs/fmm/CMakeFiles/fmm.dir/fmmoptions.cpp.o.d -o src/gromacs/fmm/CMakeFiles/fmm.dir/fmmoptions.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fmm/fmmoptions.cpp [92/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/usergpuids.cpp.o -MF src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/usergpuids.cpp.o.d -o src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/usergpuids.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/usergpuids.cpp [93/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvargrid.cpp [94/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/pullcoordexpressionparser.cpp.o -MF src/gromacs/pulling/CMakeFiles/pulling.dir/pullcoordexpressionparser.cpp.o.d -o src/gromacs/pulling/CMakeFiles/pulling.dir/pullcoordexpressionparser.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/pullcoordexpressionparser.cpp [95/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_gpath.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_gpath.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_gpath.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarcomp_gpath.cpp [96/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/compositesimulatorelement.cpp [97/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarscript.cpp [98/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/resourcedivision.cpp.o -MF src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/resourcedivision.cpp.o.d -o src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/resourcedivision.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/resourcedivision.cpp [99/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/transformationcoordinate.cpp.o -MF src/gromacs/pulling/CMakeFiles/pulling.dir/transformationcoordinate.cpp.o.d -o src/gromacs/pulling/CMakeFiles/pulling.dir/transformationcoordinate.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/transformationcoordinate.cpp [100/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/decidegpuusage.cpp.o -MF src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/decidegpuusage.cpp.o.d -o src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/decidegpuusage.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/decidegpuusage.cpp [101/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparse.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparse.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparse.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarparse.cpp [102/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/taskassignment.cpp.o -MF src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/taskassignment.cpp.o.d -o src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/taskassignment.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/taskassignment.cpp [103/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/filenameoption.cpp.o -MF src/gromacs/options/CMakeFiles/options.dir/filenameoption.cpp.o.d -o src/gromacs/options/CMakeFiles/options.dir/filenameoption.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/options/filenameoption.cpp [104/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/treesupport.cpp.o -MF src/gromacs/options/CMakeFiles/options.dir/treesupport.cpp.o.d -o src/gromacs/options/CMakeFiles/options.dir/treesupport.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/options/treesupport.cpp [105/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/domdechelper.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/domdechelper.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/domdechelper.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/domdechelper.cpp [106/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/output.cpp.o -MF src/gromacs/pulling/CMakeFiles/pulling.dir/output.cpp.o.d -o src/gromacs/pulling/CMakeFiles/pulling.dir/output.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/output.cpp [107/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/checkpointhelper.cpp [108/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/referencetemperaturemanager.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/referencetemperaturemanager.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/referencetemperaturemanager.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/referencetemperaturemanager.cpp [109/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/pullutil.cpp.o -MF src/gromacs/pulling/CMakeFiles/pulling.dir/pullutil.cpp.o.d -o src/gromacs/pulling/CMakeFiles/pulling.dir/pullutil.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/pullutil.cpp [110/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abf.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abf.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abf.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarbias_abf.cpp [111/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_meta.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_meta.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_meta.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarbias_meta.cpp [112/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/pmeloadbalancehelper.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/pmeloadbalancehelper.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/pmeloadbalancehelper.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/pmeloadbalancehelper.cpp [113/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_opes.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_opes.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_opes.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarbias_opes.cpp [114/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/topologyholder.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/topologyholder.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/topologyholder.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/topologyholder.cpp [115/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/andersentemperaturecoupling.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/andersentemperaturecoupling.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/andersentemperaturecoupling.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/andersentemperaturecoupling.cpp [116/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/signallers.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/signallers.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/signallers.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/signallers.cpp [117/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -MD -MT src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/energyterm.cpp.o -MF src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/energyterm.cpp.o.d -o src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/energyterm.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/energyanalysis/energyterm.cpp [118/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/constraintelement.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/constraintelement.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/constraintelement.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/constraintelement.cpp [119/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -Wno-null-conversion -MD -MT src/gromacs/selection/CMakeFiles/scanner.dir/scanner.cpp.o -MF src/gromacs/selection/CMakeFiles/scanner.dir/scanner.cpp.o.d -o src/gromacs/selection/CMakeFiles/scanner.dir/scanner.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/scanner.cpp [120/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/fileio/h5md/CMakeFiles/h5md.dir/h5md.cpp.o -MF src/gromacs/fileio/h5md/CMakeFiles/h5md.dir/h5md.cpp.o.d -o src/gromacs/fileio/h5md/CMakeFiles/h5md.dir/h5md.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/h5md/h5md.cpp [121/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/trajectoryelement.cpp [122/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/expandedensembleelement.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/expandedensembleelement.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/expandedensembleelement.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/expandedensembleelement.cpp [123/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/statTimer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/md5sum.cpp.o -MF src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/md5sum.cpp.o.d -o src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/md5sum.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/library/md5sum.cpp [124/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/computeglobalselement.cpp [125/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/freeenergyperturbationdata.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/freeenergyperturbationdata.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/freeenergyperturbationdata.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/freeenergyperturbationdata.cpp [126/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/forceelement.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/forceelement.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/forceelement.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/forceelement.cpp [127/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/firstorderpressurecoupling.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/firstorderpressurecoupling.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/firstorderpressurecoupling.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/firstorderpressurecoupling.cpp [128/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/statTimer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/action.transpose.cpp.o -MF src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/action.transpose.cpp.o.d -o src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/action.transpose.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/library/action.transpose.cpp [129/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/energydata.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/energydata.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/energydata.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/energydata.cpp [130/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/statTimer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/fft_binary_lookup.cpp.o -MF src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/fft_binary_lookup.cpp.o.d -o src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/fft_binary_lookup.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/library/fft_binary_lookup.cpp [131/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/statTimer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/stdafx.cpp.o -MF src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/stdafx.cpp.o.d -o src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/stdafx.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/statTimer/stdafx.cpp [132/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarmodule.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarmodule.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarmodule.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarmodule.cpp [133/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/statTimer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/enqueue.cpp.o -MF src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/enqueue.cpp.o.d -o src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/enqueue.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/library/enqueue.cpp [134/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/statTimer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/stdafx.cpp.o -MF src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/stdafx.cpp.o.d -o src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/stdafx.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/library/stdafx.cpp [135/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/pull_rotation.cpp.o -MF src/gromacs/pulling/CMakeFiles/pulling.dir/pull_rotation.cpp.o.d -o src/gromacs/pulling/CMakeFiles/pulling.dir/pull_rotation.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/pull_rotation.cpp [136/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/pull.cpp.o -MF src/gromacs/pulling/CMakeFiles/pulling.dir/pull.cpp.o.d -o src/gromacs/pulling/CMakeFiles/pulling.dir/pull.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/pull.cpp [137/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvar.cpp [138/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/pullelement.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/pullelement.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/pullelement.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/pullelement.cpp [139/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/statTimer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/lifetime.cpp.o -MF src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/lifetime.cpp.o.d -o src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/lifetime.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/library/lifetime.cpp [140/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/statTimer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/accessors.cpp.o -MF src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/accessors.cpp.o.d -o src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/accessors.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/library/accessors.cpp [141/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/statTimer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.extern.cpp.o -MF src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.extern.cpp.o.d -o src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.extern.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/statTimer/statisticalTimer.extern.cpp [142/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/parrinellorahmanbarostat.cpp [143/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -MD -MT src/programs/CMakeFiles/gmx_objlib.dir/gmx.cpp.o -MF src/programs/CMakeFiles/gmx_objlib.dir/gmx.cpp.o.d -o src/programs/CMakeFiles/gmx_objlib.dir/gmx.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/programs/gmx.cpp [144/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/statTimer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.CPU.cpp.o -MF src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.CPU.cpp.o.d -o src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.CPU.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/statTimer/statisticalTimer.CPU.cpp [145/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -MD -MT src/programs/CMakeFiles/gmx_objlib.dir/legacymodules.cpp.o -MF src/programs/CMakeFiles/gmx_objlib.dir/legacymodules.cpp.o.d -o src/programs/CMakeFiles/gmx_objlib.dir/legacymodules.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/programs/legacymodules.cpp [146/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/statTimer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/transform.cpp.o -MF src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/transform.cpp.o.d -o src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/transform.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/library/transform.cpp [147/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/mttk.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/mttk.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/mttk.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/mttk.cpp [148/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -MF src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o.d -o src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/programs/mdrun/mdrun.cpp [149/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -MF src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o.d -o src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/programs/mdrun/nonbonded_bench.cpp [150/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/nosehooverchains.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/nosehooverchains.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/nosehooverchains.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/nosehooverchains.cpp [151/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/statTimer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/repo.cpp.o -MF src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/repo.cpp.o.d -o src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/repo.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/library/repo.cpp [152/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/statTimer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.copy.cpp.o -MF src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.copy.cpp.o.d -o src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.copy.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/library/generator.copy.cpp [153/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/modularsimulator.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/modularsimulator.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/modularsimulator.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/modularsimulator.cpp [154/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/velocityscalingtemperaturecoupling.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/velocityscalingtemperaturecoupling.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/velocityscalingtemperaturecoupling.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/velocityscalingtemperaturecoupling.cpp [155/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -Wno-null-conversion -MD -MT src/gromacs/selection/CMakeFiles/scanner.dir/parser.cpp.o -MF src/gromacs/selection/CMakeFiles/scanner.dir/parser.cpp.o.d -o src/gromacs/selection/CMakeFiles/scanner.dir/parser.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/parser.cpp [156/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/statepropagatordata.cpp [157/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/statTimer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.GPU.cpp.o -MF src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.GPU.cpp.o.d -o src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.GPU.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/statTimer/statisticalTimer.GPU.cpp [158/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/statTimer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.transpose.gcn.cpp.o -MF src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.transpose.gcn.cpp.o.d -o src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.transpose.gcn.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/library/generator.transpose.gcn.cpp [159/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/statTimer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/plan.cpp.o -MF src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/plan.cpp.o.d -o src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/plan.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/library/plan.cpp [160/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/basicoptions.cpp.o -MF src/gromacs/options/CMakeFiles/options.dir/basicoptions.cpp.o.d -o src/gromacs/options/CMakeFiles/options.dir/basicoptions.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/options/basicoptions.cpp [161/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/simulatoralgorithm.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/simulatoralgorithm.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/simulatoralgorithm.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/simulatoralgorithm.cpp [162/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/propagator.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/propagator.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/propagator.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/propagator.cpp [163/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/statTimer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.transpose.cpp.o -MF src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.transpose.cpp.o.d -o src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.transpose.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/library/generator.transpose.cpp [164/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/statTimer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.stockham.cpp.o -MF src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.stockham.cpp.o.d -o src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.stockham.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/library/generator.stockham.cpp [165/1040] cd /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/gromacs && /usr/bin/cmake -D VERSION_VARIABLES=/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/VersionInfo.cmake -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/baseversion-gen.cpp.cmakein -D VERSION_OUT=utility/baseversion-gen.cpp -D GMX_SOURCE_DOI= -D GMX_RELEASE_HASH= -D GMX_SOURCE_HASH= -P /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/cmake/gmxConfigureVersionInfo.cmake && /usr/bin/cmake -E touch utility/baseversion-gen.cpp [166/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/errorcodes.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/errorcodes.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/errorcodes.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/errorcodes.cpp [167/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/alignedallocator.cpp [168/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/physicalnodecommunicator.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/physicalnodecommunicator.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/physicalnodecommunicator.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/physicalnodecommunicator.cpp [169/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/booltype.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/booltype.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/booltype.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/booltype.cpp [170/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/logger.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/logger.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/logger.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/logger.cpp [171/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/any.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/any.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/any.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/any.cpp [172/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/int64_to_int.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/int64_to_int.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/int64_to_int.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/int64_to_int.cpp [173/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/compare.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/compare.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/compare.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/compare.cpp [174/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/init.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/init.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/init.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/init.cpp [175/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxassert.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxassert.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxassert.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/gmxassert.cpp [176/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/baseversion.cpp [177/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/basenetwork.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/basenetwork.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/basenetwork.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/basenetwork.cpp [178/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/ikeyvaluetreeerror.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/ikeyvaluetreeerror.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/ikeyvaluetreeerror.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/ikeyvaluetreeerror.cpp [179/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/pleasecite.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/pleasecite.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/pleasecite.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/pleasecite.cpp [180/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/fileredirector.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/fileredirector.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/fileredirector.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/fileredirector.cpp [181/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/niceheader.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/niceheader.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/niceheader.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/niceheader.cpp [182/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/errorformat.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/errorformat.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/errorformat.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/errorformat.cpp [183/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/message_string_collector.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/message_string_collector.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/message_string_collector.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/message_string_collector.cpp [184/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxomp.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxomp.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxomp.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/gmxomp.cpp [185/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/coolstuff.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/coolstuff.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/coolstuff.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/coolstuff.cpp [186/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/cstringutil.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/cstringutil.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/cstringutil.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/cstringutil.cpp [187/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/sysinfo.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/sysinfo.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/sysinfo.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/sysinfo.cpp [188/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/programcontext.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/programcontext.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/programcontext.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/programcontext.cpp [189/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/fatalerror.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/fatalerror.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/fatalerror.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/fatalerror.cpp [190/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreemdpwriter.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreemdpwriter.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreemdpwriter.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/keyvaluetreemdpwriter.cpp [191/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/smalloc.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/smalloc.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/smalloc.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/smalloc.cpp [192/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/veccompare.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/veccompare.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/veccompare.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/veccompare.cpp [193/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/stringstream.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/stringstream.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/stringstream.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/stringstream.cpp [194/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/mpicomm.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/mpicomm.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/mpicomm.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/mpicomm.cpp [195/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/filestream.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/filestream.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/filestream.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/filestream.cpp [196/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/txtdump.cpp [197/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/loggerbuilder.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/loggerbuilder.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/loggerbuilder.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/loggerbuilder.cpp [198/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/strconvert.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/strconvert.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/strconvert.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/strconvert.cpp [199/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/strdb.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/strdb.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/strdb.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/strdb.cpp [200/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/path.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/path.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/path.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/path.cpp [201/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/textreader.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/textreader.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/textreader.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/textreader.cpp [202/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/textwriter.cpp [203/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/vecdump.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/vecdump.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/vecdump.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/vecdump.cpp [204/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/futil.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/futil.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/futil.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/futil.cpp [205/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetree.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetree.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetree.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/keyvaluetree.cpp [206/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/directoryenumerator.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/directoryenumerator.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/directoryenumerator.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/directoryenumerator.cpp [207/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/stringutil.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/stringutil.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/stringutil.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/stringutil.cpp [208/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/datafilefinder.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/datafilefinder.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/datafilefinder.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/datafilefinder.cpp [209/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/exceptions.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/exceptions.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/exceptions.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/exceptions.cpp [210/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp [211/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp [212/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreetransform.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreetransform.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreetransform.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/keyvaluetreetransform.cpp [213/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp [214/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp [215/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_F.cpp [216/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_F.cpp [217/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp [218/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp [219/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp [220/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp [221/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp [222/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp [223/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp [224/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VF.cpp [225/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp [226/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp [227/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp [228/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp [229/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp [230/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp [231/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VF.cpp [232/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp [233/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp [234/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp [235/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp [236/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp [237/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp [238/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp [239/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp [240/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp [241/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp [242/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/mpiinfo.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/mpiinfo.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/mpiinfo.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/mpiinfo.cpp [243/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp [244/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_F.cpp [245/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp [246/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp [247/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp [248/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp [249/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VgrpF.cpp [250/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp [251/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp [252/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp [253/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp [254/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp [255/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp [256/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp [257/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp [258/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp [259/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp [260/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp [261/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp [262/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp [263/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp [264/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp [265/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp [266/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp [267/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp [268/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp [269/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp [270/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp [271/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp [272/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp [273/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp [274/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp [275/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp [276/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp [277/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp [278/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp [279/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VF.cpp [280/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp [281/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp [282/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp [283/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp [284/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VF.cpp [285/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp [286/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp [287/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp [288/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp [289/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp [290/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp [291/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp [292/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp [293/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VF.cpp [294/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp [295/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp [296/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp [297/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp [298/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp [299/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp [300/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp [301/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp [302/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp [303/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp [304/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp [305/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp [306/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp [307/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp [308/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_F.cpp [309/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp [310/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp [311/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp [312/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_F.cpp [313/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp [314/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VF.cpp [315/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_F.cpp [316/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VF.cpp [317/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp [318/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp [319/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp [320/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp [321/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp [322/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp [323/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_F.cpp [324/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VF.cpp [325/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp [326/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_F.cpp [327/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VF.cpp [328/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp [329/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp [330/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_F.cpp [331/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp [332/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VF.cpp [333/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VgrpF.cpp [334/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp [335/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp [336/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp [337/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp [338/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp [339/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp [340/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp [341/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp [342/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp [343/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp [344/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp [345/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp [346/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp [347/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp [348/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp [349/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp [350/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp [351/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp [352/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp [353/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp [354/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp [355/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp [356/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp [357/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp [358/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_F.cpp [359/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp [360/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp [361/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp [362/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp [363/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp [364/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp [365/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_F.cpp [366/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VF.cpp [367/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp [368/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_F.cpp [369/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VF.cpp [370/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp [371/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_F.cpp [372/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VF.cpp [373/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp [374/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_F.cpp [375/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VF.cpp [376/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp [377/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VF.cpp [378/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_F.cpp [379/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp [380/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp [381/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp [382/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp [383/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VF.cpp [384/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_F.cpp [385/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp [386/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_F.cpp [387/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VF.cpp [388/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp [389/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_F.cpp [390/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VF.cpp [391/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VgrpF.cpp [392/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernel_common.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernel_common.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernel_common.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernel_common.cpp [393/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/exclusionchecker.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/exclusionchecker.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/exclusionchecker.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/exclusionchecker.cpp [394/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistsets.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistsets.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistsets.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/pairlistsets.cpp [395/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_gpu_buffer_ops_internal_ocl.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_gpu_buffer_ops_internal_ocl.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_gpu_buffer_ops_internal_ocl.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/opencl/nbnxm_gpu_buffer_ops_internal_ocl.cpp [396/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_geometry.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_geometry.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_geometry.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/nbnxm_geometry.cpp [397/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/freeenergydispatch.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/freeenergydispatch.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/freeenergydispatch.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/freeenergydispatch.cpp [398/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/commandline/cmdlinehelpcontext.cpp [399/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_system.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_system.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_system.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/benchmark/bench_system.cpp [400/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_gpu_ref.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_gpu_ref.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_gpu_ref.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_reference/kernel_gpu_ref.cpp [401/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistparams.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistparams.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistparams.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/pairlistparams.cpp [402/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistwork.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistwork.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistwork.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/pairlistwork.cpp [403/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/gridset.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/gridset.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/gridset.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/gridset.cpp [404/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodulesettings.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodulesettings.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodulesettings.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/commandline/cmdlinemodulesettings.cpp [405/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairsearch.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairsearch.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairsearch.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/pairsearch.cpp [406/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodule.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodule.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodule.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/commandline/cmdlinemodule.cpp [407/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_prune.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_prune.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_prune.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_reference/kernel_ref_prune.cpp [408/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/nbnxm.cpp [409/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/simd_prune_kernel.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/simd_prune_kernel.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/simd_prune_kernel.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/simd_prune_kernel.cpp [410/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist_simd_kernel.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist_simd_kernel.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist_simd_kernel.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/pairlist_simd_kernel.cpp [411/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/simd_energy_accumulator.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/simd_energy_accumulator.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/simd_energy_accumulator.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/simd_energy_accumulator.cpp [412/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistset.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistset.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistset.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/pairlistset.cpp [413/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/prunekerneldispatch.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/prunekerneldispatch.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/prunekerneldispatch.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/prunekerneldispatch.cpp [414/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl_jit_support.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl_jit_support.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl_jit_support.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/opencl/nbnxm_ocl_jit_support.cpp [415/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl_data_mgmt.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl_data_mgmt.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl_data_mgmt.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/opencl/nbnxm_ocl_data_mgmt.cpp [416/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineinit.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineinit.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineinit.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/commandline/cmdlineinit.cpp [417/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kerneldispatch.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kerneldispatch.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kerneldispatch.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kerneldispatch.cpp [418/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineoptionsmodule.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineoptionsmodule.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineoptionsmodule.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/commandline/cmdlineoptionsmodule.cpp [419/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/commandline/cmdlineparser.cpp [420/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/viewit.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/commandline/viewit.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/commandline/viewit.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/commandline/viewit.cpp [421/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/filenm.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/commandline/filenm.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/commandline/filenm.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/commandline/filenm.cpp [422/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_setup.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_setup.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_setup.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/benchmark/bench_setup.cpp [423/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/atomdistribution.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/atomdistribution.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/atomdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/atomdistribution.cpp [424/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/opencl/nbnxm_ocl.cpp [425/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist_tuning.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist_tuning.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist_tuning.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/pairlist_tuning.cpp [426/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlb.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlb.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlb.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/dlb.cpp [427/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/dlbtiming.cpp [428/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpwriter.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpwriter.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpwriter.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/commandline/cmdlinehelpwriter.cpp [429/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/commandline/cmdlineprogramcontext.cpp [430/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/shellcompletions.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/commandline/shellcompletions.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/commandline/shellcompletions.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/commandline/shellcompletions.cpp [431/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/grid.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/grid.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/grid.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/grid.cpp [432/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/box.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/box.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/box.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/box.cpp [433/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/domdec_network.cpp [434/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomset.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomset.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomset.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/localatomset.cpp [435/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/ga2la.cpp [436/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodulemanager.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodulemanager.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodulemanager.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/commandline/cmdlinemodulemanager.cpp [437/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/collect.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/collect.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/collect.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/collect.cpp [438/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/computemultibodycutoffs.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/computemultibodycutoffs.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/computemultibodycutoffs.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/computemultibodycutoffs.cpp [439/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_setup.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_setup.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_setup.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/nbnxm_setup.cpp [440/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetdata.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetdata.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetdata.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/localatomsetdata.cpp [441/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetmanager.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetmanager.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetmanager.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/localatomsetmanager.cpp [442/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/domdec_vsite.cpp [443/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/commandline/cmdlinehelpmodule.cpp [444/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_zones.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_zones.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_zones.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/domdec_zones.cpp [445/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/pargs.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/commandline/pargs.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/commandline/pargs.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/commandline/pargs.cpp [446/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/cellsizes.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/cellsizes.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/cellsizes.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/cellsizes.cpp [447/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/gpuhaloexchange_impl.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/gpuhaloexchange_impl.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/gpuhaloexchange_impl.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/gpuhaloexchange_impl.cpp [448/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/nsgrid.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/nsgrid.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/nsgrid.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/nsgrid.cpp [449/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/dump.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/dump.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/dump.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/dump.cpp [450/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/functions.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/math/functions.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/math/functions.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/functions.cpp [451/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/atomdata.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/atomdata.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/atomdata.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/atomdata.cpp [452/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/3dtransforms.cpp [453/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/domainpaircomm.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/domainpaircomm.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/domainpaircomm.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/domainpaircomm.cpp [454/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/coordinatetransformation.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/math/coordinatetransformation.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/math/coordinatetransformation.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/coordinatetransformation.cpp [455/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/utilities.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/math/utilities.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/math/utilities.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/utilities.cpp [456/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/domdec_specatomcomm.cpp [457/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/distribute.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/distribute.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/distribute.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/distribute.cpp [458/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/mdsetup.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/mdsetup.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/mdsetup.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/mdsetup.cpp [459/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/densityfittingforce.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/math/densityfittingforce.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/math/densityfittingforce.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/densityfittingforce.cpp [460/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/optimization.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/math/optimization.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/math/optimization.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/optimization.cpp [461/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/commrec.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/commrec.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/commrec.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdtypes/commrec.cpp [462/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/utility.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/utility.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/utility.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/utility.cpp [463/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/do_fit.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/math/do_fit.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/math/do_fit.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/do_fit.cpp [464/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/makebondedlinks.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/makebondedlinks.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/makebondedlinks.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/makebondedlinks.cpp [465/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/invertmatrix.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/math/invertmatrix.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/math/invertmatrix.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/invertmatrix.cpp [466/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/domdec_constraints.cpp [467/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/haloexchangesetup.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/haloexchangesetup.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/haloexchangesetup.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/haloexchangesetup.cpp [468/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/domdec_setup.cpp [469/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/densityfit.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/math/densityfit.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/math/densityfit.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/densityfit.cpp [470/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/haloexchange.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/haloexchange.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/haloexchange.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/haloexchange.cpp [471/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/localtopologychecker.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/localtopologychecker.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/localtopologychecker.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/localtopologychecker.cpp [472/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/gausstransform.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/math/gausstransform.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/math/gausstransform.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/gausstransform.cpp [473/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/md_enums.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/md_enums.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/md_enums.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdtypes/md_enums.cpp [474/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/exponentialmovingaverage.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/math/exponentialmovingaverage.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/math/exponentialmovingaverage.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/exponentialmovingaverage.cpp [475/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/nrjac.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/math/nrjac.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/math/nrjac.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/nrjac.cpp [476/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/neldermead.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/math/neldermead.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/math/neldermead.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/neldermead.cpp [477/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/iforceprovider.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/iforceprovider.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/iforceprovider.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdtypes/iforceprovider.cpp [478/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/boxutilities.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/boxutilities.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/boxutilities.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/boxutilities.cpp [479/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/forcebuffers.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/forcebuffers.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/forcebuffers.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdtypes/forcebuffers.cpp [480/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/group.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/group.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/group.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdtypes/group.cpp [481/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/observableshistory.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/observableshistory.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/observableshistory.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdtypes/observableshistory.cpp [482/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbcenums.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbcenums.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbcenums.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/pbcenums.cpp [483/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/reversetopology.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/reversetopology.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/reversetopology.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/reversetopology.cpp [484/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/rstparser.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/rstparser.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/rstparser.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/onlinehelp/rstparser.cpp [485/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/onlinehelp/helpmanager.cpp [486/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/localtopology.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/localtopology.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/localtopology.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/localtopology.cpp [487/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/observablesreducer.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/observablesreducer.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/observablesreducer.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdtypes/observablesreducer.cpp [488/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/random/tabulatednormaldistribution.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/random/tabulatednormaldistribution.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/random/tabulatednormaldistribution.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/random/tabulatednormaldistribution.cpp [489/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/redistribute.cpp [490/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/checkpointdata.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/checkpointdata.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/checkpointdata.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdtypes/checkpointdata.cpp [491/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/com.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/com.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/com.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/com.cpp [492/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc_simd.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc_simd.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc_simd.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/pbc_simd.cpp [493/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/timing/cyclecounter.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/timing/cyclecounter.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/timing/cyclecounter.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/cyclecounter.cpp [494/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/timing/external_tracing.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/timing/external_tracing.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/timing/external_tracing.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/external_tracing.cpp [495/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/timing/walltime_accounting.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/timing/walltime_accounting.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/timing/walltime_accounting.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/walltime_accounting.cpp [496/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/multipletimestepping.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/multipletimestepping.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/multipletimestepping.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdtypes/multipletimestepping.cpp [497/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helptopic.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helptopic.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helptopic.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/onlinehelp/helptopic.cpp [498/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/random/seed.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/random/seed.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/random/seed.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/random/seed.cpp [499/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/interaction_const.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/interaction_const.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/interaction_const.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdtypes/interaction_const.cpp [500/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpformat.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpformat.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpformat.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/onlinehelp/helpformat.cpp [501/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/rmpbc.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/rmpbc.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/rmpbc.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/rmpbc.cpp [502/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbcmethods.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbcmethods.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbcmethods.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/pbcmethods.cpp [503/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/df_history.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/df_history.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/df_history.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdtypes/df_history.cpp [504/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/restraint/manager.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/restraint/manager.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/restraint/manager.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/restraint/manager.cpp [505/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/serialization/inmemoryserializer.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/serialization/inmemoryserializer.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/serialization/inmemoryserializer.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/inmemoryserializer.cpp [506/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tables/splineutil.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/tables/splineutil.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/tables/splineutil.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/tables/splineutil.cpp [507/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/forcefieldparameters.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/topology/forcefieldparameters.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/topology/forcefieldparameters.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/forcefieldparameters.cpp [508/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/ifunc.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/topology/ifunc.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/topology/ifunc.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/ifunc.cpp [509/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/block.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/topology/block.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/topology/block.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/block.cpp [510/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/restraint/restraintmdmodule.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/restraint/restraintmdmodule.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/restraint/restraintmdmodule.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/restraint/restraintmdmodule.cpp [511/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/energyhistory.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/energyhistory.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/energyhistory.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdtypes/energyhistory.cpp [512/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/atomsbuilder.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/topology/atomsbuilder.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/topology/atomsbuilder.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/atomsbuilder.cpp [513/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/awh_history.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/awh_history.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/awh_history.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdtypes/awh_history.cpp [514/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/invblock.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/topology/invblock.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/topology/invblock.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/invblock.cpp [515/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/pbc.cpp [516/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/threaded_force_buffer.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/threaded_force_buffer.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/threaded_force_buffer.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdtypes/threaded_force_buffer.cpp [517/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpwritercontext.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpwritercontext.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpwritercontext.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/onlinehelp/helpwritercontext.cpp [518/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/atoms.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/topology/atoms.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/topology/atoms.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/atoms.cpp [519/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/pairlist.cpp [520/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/exclusionblocks.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/topology/exclusionblocks.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/topology/exclusionblocks.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/exclusionblocks.cpp [521/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/atomprop.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/topology/atomprop.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/topology/atomprop.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/atomprop.cpp [522/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tables/cubicsplinetable.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/tables/cubicsplinetable.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/tables/cubicsplinetable.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/tables/cubicsplinetable.cpp [523/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/inputrec.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/inputrec.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/inputrec.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdtypes/inputrec.cpp [524/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/binsearch.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/binsearch.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/binsearch.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/binsearch.cpp [525/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/mshift.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/mshift.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/mshift.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/mshift.cpp [526/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tables/quadraticsplinetable.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/tables/quadraticsplinetable.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/tables/quadraticsplinetable.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/tables/quadraticsplinetable.cpp [527/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/angle_correction.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/angle_correction.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/angle_correction.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/angle_correction.cpp [528/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/idef.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/topology/idef.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/topology/idef.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/idef.cpp [529/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/timing/wallcycle.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/timing/wallcycle.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/timing/wallcycle.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/wallcycle.cpp [530/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/serialization/keyvaluetreeserializer.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/serialization/keyvaluetreeserializer.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/serialization/keyvaluetreeserializer.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/keyvaluetreeserializer.cpp [531/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/dens_filter.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/dens_filter.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/dens_filter.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/dens_filter.cpp [532/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/residuetypes.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/topology/residuetypes.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/topology/residuetypes.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/residuetypes.cpp [533/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/state.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/state.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/state.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdtypes/state.cpp [534/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/mtop_atomloops.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/topology/mtop_atomloops.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/topology/mtop_atomloops.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/mtop_atomloops.cpp [535/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectory/energyframe.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectory/energyframe.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectory/energyframe.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectory/energyframe.cpp [536/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectory/trajectoryframe.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectory/trajectoryframe.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectory/trajectoryframe.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectory/trajectoryframe.cpp [537/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/imd/imdsocket.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/imd/imdsocket.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/imd/imdsocket.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/imd/imdsocket.cpp [538/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mimic/utilities.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mimic/utilities.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mimic/utilities.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mimic/utilities.cpp [539/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tables/forcetable.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/tables/forcetable.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/tables/forcetable.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/tables/forcetable.cpp [540/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/topsort.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/topology/topsort.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/topology/topsort.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/topsort.cpp [541/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/eigio.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/eigio.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/eigio.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/eigio.cpp [542/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mimic/communicator_stub.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mimic/communicator_stub.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mimic/communicator_stub.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mimic/communicator_stub.cpp [543/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/cmat.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/cmat.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/cmat.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/cmat.cpp [544/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/symtab.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/topology/symtab.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/topology/symtab.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/symtab.cpp [545/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/fitahx.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/fitahx.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/fitahx.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/fitahx.cpp [546/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/topology.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/topology/topology.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/topology/topology.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/topology.cpp [547/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/embedded_system_preprocessing.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/topology/embedded_system_preprocessing.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/topology/embedded_system_preprocessing.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/embedded_system_preprocessing.cpp [548/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/dlist.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/dlist.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/dlist.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/dlist.cpp [549/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_angle.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_angle.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_angle.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_angle.cpp [550/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/anadih.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/anadih.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/anadih.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/anadih.cpp [551/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/domdec.cpp [552/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/cluster_methods.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/cluster_methods.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/cluster_methods.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/cluster_methods.cpp [553/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/mtop_util.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/topology/mtop_util.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/topology/mtop_util.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/mtop_util.cpp [554/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/imd/imd.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/imd/imd.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/imd/imd.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/imd/imd.cpp [555/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_bundle.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_bundle.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_bundle.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_bundle.cpp [556/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/partition.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/partition.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/partition.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/partition.cpp [557/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/index.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/topology/index.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/topology/index.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/index.cpp [558/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_clustsize.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_clustsize.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_clustsize.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_clustsize.cpp [559/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dielectric.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dielectric.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dielectric.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_dielectric.cpp [560/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_confrms.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_confrms.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_confrms.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_confrms.cpp [561/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_densmap.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_densmap.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_densmap.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_densmap.cpp [562/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_current.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_current.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_current.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_current.cpp [563/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_density.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_density.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_density.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_density.cpp [564/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_awh.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_awh.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_awh.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_awh.cpp [565/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_analyze.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_analyze.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_analyze.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_analyze.cpp [566/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_1x1.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_1x1.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_1x1.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_reference/kernel_ref_1x1.cpp [567/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_covar.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_covar.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_covar.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_covar.cpp [568/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_densorder.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_densorder.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_densorder.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_densorder.cpp [569/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dyecoupl.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dyecoupl.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dyecoupl.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_dyecoupl.cpp [570/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dos.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dos.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dos.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_dos.cpp [571/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_anaeig.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_anaeig.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_anaeig.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_anaeig.cpp [572/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_enemat.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_enemat.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_enemat.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_enemat.cpp [573/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_h2order.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_h2order.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_h2order.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_h2order.cpp [574/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_filter.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_filter.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_filter.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_filter.cpp [575/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_helix.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_helix.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_helix.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_helix.cpp [576/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_cluster.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_cluster.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_cluster.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_cluster.cpp [577/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_lie.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_lie.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_lie.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_lie.cpp [578/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_gyrate.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_gyrate.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_gyrate.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_gyrate.cpp [579/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/essentialdynamics/edsam.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/essentialdynamics/edsam.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/essentialdynamics/edsam.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/essentialdynamics/edsam.cpp [580/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_bar.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_bar.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_bar.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_bar.cpp [581/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dipoles.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dipoles.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dipoles.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_dipoles.cpp [582/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_helixorient.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_helixorient.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_helixorient.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_helixorient.cpp [583/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_mdmat.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_mdmat.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_mdmat.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_mdmat.cpp [584/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_make_edi.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_make_edi.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_make_edi.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_make_edi.cpp [585/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rama.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rama.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rama.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_rama.cpp [586/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmens.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmens.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmens.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_nmens.cpp [587/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_hydorder.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_hydorder.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_hydorder.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_hydorder.cpp [588/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmtraj.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmtraj.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmtraj.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_nmtraj.cpp [589/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_principal.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_principal.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_principal.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_principal.cpp [590/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_saxs.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_saxs.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_saxs.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_saxs.cpp [591/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/swap/swapcoords.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/swap/swapcoords.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/swap/swapcoords.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/swap/swapcoords.cpp [592/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmeig.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmeig.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmeig.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_nmeig.cpp [593/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rotacf.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rotacf.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rotacf.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_rotacf.cpp [594/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_mindist.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_mindist.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_mindist.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_mindist.cpp [595/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_polystat.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_polystat.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_polystat.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_polystat.cpp [596/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_saltbr.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_saltbr.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_saltbr.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_saltbr.cpp [597/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sigeps.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sigeps.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sigeps.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_sigeps.cpp [598/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rotmat.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rotmat.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rotmat.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_rotmat.cpp [599/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_potential.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_potential.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_potential.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_potential.cpp [600/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_disre.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_disre.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_disre.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_disre.cpp [601/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sans.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sans.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sans.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_sans.cpp [602/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_order.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_order.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_order.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_order.cpp [603/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_chi.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_chi.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_chi.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_chi.cpp [604/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rmsf.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rmsf.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rmsf.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_rmsf.cpp [605/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rmsdist.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rmsdist.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rmsdist.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_rmsdist.cpp [606/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_energy.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_energy.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_energy.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_energy.cpp [607/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_wheel.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_wheel.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_wheel.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_wheel.cpp [608/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_spatial.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_spatial.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_spatial.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_spatial.cpp [609/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_spol.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_spol.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_spol.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_spol.cpp [610/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sorient.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sorient.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sorient.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_sorient.cpp [611/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmr.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmr.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmr.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_nmr.cpp [612/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/powerspect.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/powerspect.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/powerspect.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/powerspect.cpp [613/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_velacc.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_velacc.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_velacc.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_velacc.cpp [614/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/thermochemistry.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/thermochemistry.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/thermochemistry.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/thermochemistry.cpp [615/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/nrama.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/nrama.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/nrama.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/nrama.cpp [616/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_tcaf.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_tcaf.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_tcaf.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_tcaf.cpp [617/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_trjorder.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_trjorder.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_trjorder.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_trjorder.cpp [618/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/princ.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/princ.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/princ.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/princ.cpp [619/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/calch.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/calch.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/calch.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/calch.cpp [620/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/pp2shift.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/pp2shift.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/pp2shift.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/pp2shift.cpp [621/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/hxprops.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/hxprops.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/hxprops.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/hxprops.cpp [622/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/compute_io.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/compute_io.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/compute_io.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/compute_io.cpp [623/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_vanhove.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_vanhove.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_vanhove.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_vanhove.cpp [624/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rms.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rms.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rms.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_rms.cpp [625/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/nsfactor.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/nsfactor.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/nsfactor.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/nsfactor.cpp [626/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/add_par.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/add_par.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/add_par.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/add_par.cpp [627/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/sfactor.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/sfactor.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/sfactor.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/sfactor.cpp [628/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_bond_atomtype.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_bond_atomtype.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_bond_atomtype.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/gpp_bond_atomtype.cpp [629/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/fflibutil.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/fflibutil.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/fflibutil.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/fflibutil.cpp [630/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sham.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sham.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sham.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_sham.cpp [631/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/makeexclusiondistances.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/makeexclusiondistances.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/makeexclusiondistances.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/makeexclusiondistances.cpp [632/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_traj.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_traj.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_traj.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_traj.cpp [633/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/convparm.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/convparm.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/convparm.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/convparm.cpp [634/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_maxwell_velocities.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_maxwell_velocities.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_maxwell_velocities.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/gen_maxwell_velocities.cpp [635/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genrestr.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genrestr.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genrestr.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/genrestr.cpp [636/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/hizzie.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/hizzie.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/hizzie.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/hizzie.cpp [637/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_nextnb.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_nextnb.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_nextnb.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/gpp_nextnb.cpp [638/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genconf.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genconf.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genconf.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/genconf.cpp [639/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/massrepartitioning.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/massrepartitioning.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/massrepartitioning.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/massrepartitioning.cpp [640/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pgutil.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pgutil.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pgutil.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/pgutil.cpp [641/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/editconf.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/editconf.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/editconf.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/editconf.cpp [642/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/nm2type.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/nm2type.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/nm2type.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/nm2type.cpp [643/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/hackblock.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/hackblock.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/hackblock.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/hackblock.cpp [644/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/h_db.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/h_db.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/h_db.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/h_db.cpp [645/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genhydro.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genhydro.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genhydro.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/genhydro.cpp [646/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genion.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genion.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genion.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/genion.cpp [647/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_atomtype.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_atomtype.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_atomtype.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/gpp_atomtype.cpp [648/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gmxcpp.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gmxcpp.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gmxcpp.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/gmxcpp.cpp [649/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readrot.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readrot.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readrot.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/readrot.cpp [650/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/tomorse.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/tomorse.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/tomorse.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/tomorse.cpp [651/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/crosscorr.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/crosscorr.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/crosscorr.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/correlationfunctions/crosscorr.cpp [652/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_xpm2ps.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_xpm2ps.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_xpm2ps.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_xpm2ps.cpp [653/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topdirs.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topdirs.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topdirs.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/topdirs.cpp [654/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_wham.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_wham.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_wham.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_wham.cpp [655/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/toputil.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/toputil.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/toputil.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/toputil.cpp [656/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topshake.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topshake.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topshake.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/topshake.cpp [657/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/gmx_lmcurve.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/gmx_lmcurve.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/gmx_lmcurve.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/correlationfunctions/gmx_lmcurve.cpp [658/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datamodule.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datamodule.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datamodule.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/analysisdata/datamodule.cpp [659/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/polynomials.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/polynomials.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/polynomials.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/correlationfunctions/polynomials.cpp [660/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/insert_molecules.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/insert_molecules.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/insert_molecules.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/insert_molecules.cpp [661/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/integrate.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/integrate.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/integrate.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/correlationfunctions/integrate.cpp [662/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_hbond.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_hbond.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_hbond.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_hbond.cpp [663/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/manyautocorrelation.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/manyautocorrelation.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/manyautocorrelation.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/correlationfunctions/manyautocorrelation.cpp [664/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/xlate.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/xlate.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/xlate.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/xlate.cpp [665/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/expfit.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/expfit.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/expfit.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/correlationfunctions/expfit.cpp [666/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/statistics/statistics.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/statistics/statistics.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/statistics/statistics.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/statistics/statistics.cpp [667/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/dataframe.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/dataframe.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/dataframe.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/analysisdata/dataframe.cpp [668/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/dataproxy.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/dataproxy.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/dataproxy.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/analysisdata/dataproxy.cpp [669/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/specbond.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/specbond.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/specbond.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/specbond.cpp [670/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/analysisdata.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/analysisdata.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/analysisdata.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/analysisdata/analysisdata.cpp [671/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/frameaverager.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/frameaverager.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/frameaverager.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/analysisdata/modules/frameaverager.cpp [672/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/abstractdata.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/abstractdata.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/abstractdata.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/analysisdata/abstractdata.cpp [673/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/arraydata.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/arraydata.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/arraydata.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/analysisdata/arraydata.cpp [674/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_ad.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_ad.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_ad.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/gen_ad.cpp [675/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/solvate.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/solvate.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/solvate.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/solvate.cpp [676/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/autocorr.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/autocorr.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/autocorr.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/correlationfunctions/autocorr.cpp [677/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datamodulemanager.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datamodulemanager.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datamodulemanager.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/analysisdata/datamodulemanager.cpp [678/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/average.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/average.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/average.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/analysisdata/modules/average.cpp [679/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadaptercontainer.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadaptercontainer.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadaptercontainer.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/coordinateio/outputadaptercontainer.cpp [680/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setstarttime.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setstarttime.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setstarttime.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/coordinateio/outputadapters/setstarttime.cpp [681/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/displacement.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/displacement.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/displacement.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/analysisdata/modules/displacement.cpp /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/analysisdata/modules/displacement.cpp: In member function ‘virtual void gmx::AnalysisDataDisplacementModule::frameFinished(const gmx::AnalysisDataFrameHeader&)’: /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/analysisdata/modules/displacement.cpp:279:13: warning: variable ‘k’ set but not used [-Wunused-but-set-variable=] 279 | int k = 1; | ^ At top level: cc1plus: note: unrecognized command-line option ‘-Wno-cast-function-type-strict’ may have been intended to silence earlier diagnostics [682/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/settimestep.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/settimestep.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/settimestep.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/coordinateio/outputadapters/settimestep.cpp [683/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/ter_db.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/ter_db.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/ter_db.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/ter_db.cpp [684/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setprecision.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setprecision.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setprecision.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/coordinateio/outputadapters/setprecision.cpp [685/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/x2top.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/x2top.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/x2top.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/x2top.cpp [686/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setforces.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setforces.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setforces.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/coordinateio/outputadapters/setforces.cpp [687/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setvelocities.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setvelocities.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setvelocities.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/coordinateio/outputadapters/setvelocities.cpp [688/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setatoms.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setatoms.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setatoms.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/coordinateio/outputadapters/setatoms.cpp [689/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/outputselector.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/outputselector.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/outputselector.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/coordinateio/outputadapters/outputselector.cpp [690/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/lifetime.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/lifetime.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/lifetime.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/analysisdata/modules/lifetime.cpp [691/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/resall.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/resall.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/resall.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/resall.cpp [692/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/frameconverters/register.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/frameconverters/register.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/frameconverters/register.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/coordinateio/frameconverters/register.cpp [693/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datastorage.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datastorage.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datastorage.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/analysisdata/datastorage.cpp [694/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/requirements.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/requirements.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/requirements.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/coordinateio/requirements.cpp [695/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules.cpp [696/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/analysissettings.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/analysissettings.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/analysissettings.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/analysissettings.cpp [697/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topio.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topio.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topio.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/topio.cpp [698/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/plot.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/plot.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/plot.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/analysisdata/modules/plot.cpp [699/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/coordinatefile.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/coordinatefile.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/coordinatefile.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/coordinateio/coordinatefile.cpp [700/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/isotope.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/isotope.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/isotope.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/isotope.cpp [701/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/convert_trj.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/convert_trj.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/convert_trj.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/convert_trj.cpp [702/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/cmdlinerunner.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/cmdlinerunner.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/cmdlinerunner.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/cmdlinerunner.cpp [703/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/histogram.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/histogram.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/histogram.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/analysisdata/modules/histogram.cpp [704/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/vsite_parm.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/vsite_parm.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/vsite_parm.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/vsite_parm.cpp [705/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/analysismodule.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/analysismodule.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/analysismodule.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/analysismodule.cpp [706/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_vsite.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_vsite.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_vsite.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/gen_vsite.cpp [707/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/gyrate.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/gyrate.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/gyrate.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/gyrate.cpp [708/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering-debye-sans.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering-debye-sans.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering-debye-sans.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/scattering-debye-sans.cpp [709/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/extract_cluster.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/extract_cluster.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/extract_cluster.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/extract_cluster.cpp [710/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/distance.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/distance.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/distance.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/distance.cpp [711/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering-debye-saxs.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering-debye-saxs.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering-debye-saxs.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/scattering-debye-saxs.cpp [712/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/freevolume.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/freevolume.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/freevolume.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/freevolume.cpp [713/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scatteringfactors.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scatteringfactors.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scatteringfactors.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/scatteringfactors.cpp [714/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2top.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2top.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2top.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/pdb2top.cpp [715/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/pairdist.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/pairdist.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/pairdist.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/pairdist.cpp [716/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering-debye.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering-debye.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering-debye.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/scattering-debye.cpp [717/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/angle.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/angle.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/angle.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/angle.cpp [718/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/trajectory.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/trajectory.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/trajectory.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/trajectory.cpp [719/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/rdf.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/rdf.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/rdf.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/rdf.cpp [720/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_4x4.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_4x4.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_4x4.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_reference/kernel_ref_4x4.cpp [721/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/conformation_utilities.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/conformation_utilities.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/conformation_utilities.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxlib/conformation_utilities.cpp [722/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/surfacearea.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/surfacearea.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/surfacearea.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/surfacearea.cpp [723/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tools/mk_angndx.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/tools/mk_angndx.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/tools/mk_angndx.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/tools/mk_angndx.cpp [724/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/network.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/network.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/network.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxlib/network.cpp [725/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/topologyinformation.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/topologyinformation.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/topologyinformation.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/topologyinformation.cpp [726/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/runnercommon.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/runnercommon.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/runnercommon.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/runnercommon.cpp [727/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nrnb.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nrnb.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nrnb.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxlib/nrnb.cpp [728/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/checkpointhandler.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/checkpointhandler.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/checkpointhandler.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/checkpointhandler.cpp [729/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/sasa.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/sasa.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/sasa.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/sasa.cpp [730/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/scattering.cpp [731/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calcvir.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calcvir.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calcvir.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/calcvir.cpp [732/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calcmu.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calcmu.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calcmu.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/calcmu.cpp [733/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tools/eneconv.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/tools/eneconv.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/tools/eneconv.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/tools/eneconv.cpp [734/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tools/report_methods.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/tools/report_methods.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/tools/report_methods.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/tools/report_methods.cpp [735/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/boxdeformation.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/boxdeformation.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/boxdeformation.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/boxdeformation.cpp [736/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/broadcaststructs.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/broadcaststructs.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/broadcaststructs.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/broadcaststructs.cpp [737/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tools/dump.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/tools/dump.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/tools/dump.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/tools/dump.cpp [738/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/energydrifttracker.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/energydrifttracker.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/energydrifttracker.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/energydrifttracker.cpp [739/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tools/check.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/tools/check.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/tools/check.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/tools/check.cpp [740/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/select.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/select.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/select.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/select.cpp [741/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/msd.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/msd.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/msd.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/msd.cpp [742/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/expanded_internal.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/expanded_internal.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/expanded_internal.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/expanded_internal.cpp [743/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/ebin.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/ebin.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/ebin.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/ebin.cpp [744/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tools/trjcat.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/tools/trjcat.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/tools/trjcat.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/tools/trjcat.cpp [745/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/grompp.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/grompp.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/grompp.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/grompp.cpp [746/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/dssp.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/dssp.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/dssp.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/dssp.cpp [747/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/freeenergyparameters.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/freeenergyparameters.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/freeenergyparameters.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/freeenergyparameters.cpp [748/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/lincs_constraint_group_sizes.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/lincs_constraint_group_sizes.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/lincs_constraint_group_sizes.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/lincs_constraint_group_sizes.cpp [749/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constraintrange.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constraintrange.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constraintrange.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/constraintrange.cpp [750/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tools/pme_error.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/tools/pme_error.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/tools/pme_error.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/tools/pme_error.cpp [751/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tools/make_ndx.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/tools/make_ndx.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/tools/make_ndx.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/tools/make_ndx.cpp [752/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/gmx_omp_nthreads.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/gmx_omp_nthreads.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/gmx_omp_nthreads.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/gmx_omp_nthreads.cpp [753/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constraint_gpu_helpers.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constraint_gpu_helpers.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constraint_gpu_helpers.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/constraint_gpu_helpers.cpp [754/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tools/trjconv.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/tools/trjconv.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/tools/trjconv.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/tools/trjconv.cpp [755/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/enerdata_utils.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/enerdata_utils.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/enerdata_utils.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/enerdata_utils.cpp [756/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/groupcoord.cpp [757/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tools/convert_tpr.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/tools/convert_tpr.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/tools/convert_tpr.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/tools/convert_tpr.cpp [758/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdgraph_gpu_impl.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdgraph_gpu_impl.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdgraph_gpu_impl.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/mdgraph_gpu_impl.cpp [759/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/dispersioncorrection.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/dispersioncorrection.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/dispersioncorrection.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/dispersioncorrection.cpp [760/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/rbin.cpp [761/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/toppush.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/toppush.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/toppush.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/toppush.cpp [762/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/simulationsignal.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/simulationsignal.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/simulationsignal.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/simulationsignal.cpp [763/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/force.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/force.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/force.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/force.cpp [764/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sighandler.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sighandler.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sighandler.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/sighandler.cpp [765/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tools/tune_pme.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/tools/tune_pme.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/tools/tune_pme.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/tools/tune_pme.cpp [766/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/tgroup.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/tgroup.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/tgroup.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/tgroup.cpp [767/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rf_util.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rf_util.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rf_util.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/rf_util.cpp [768/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/resethandler.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/resethandler.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/resethandler.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/resethandler.cpp [769/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stophandler.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stophandler.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stophandler.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/stophandler.cpp [770/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2gmx.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2gmx.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2gmx.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/pdb2gmx.cpp [771/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/perf_est.cpp [772/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/hbond.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/hbond.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/hbond.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/hbond.cpp [773/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calc_verletbuf.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calc_verletbuf.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calc_verletbuf.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/calc_verletbuf.cpp [774/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/mdebin_bar.cpp [775/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/gpuforcereduction_impl_stubs.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/gpuforcereduction_impl_stubs.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/gpuforcereduction_impl_stubs.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/gpuforcereduction_impl_stubs.cpp [776/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/shake.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/shake.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/shake.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/shake.cpp [777/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stat.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stat.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stat.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/stat.cpp [778/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constr.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constr.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constr.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/constr.cpp [779/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/coupling.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/coupling.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/coupling.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/coupling.cpp [780/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/splitter.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/splitter.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/splitter.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/splitter.cpp [781/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readpull.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readpull.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readpull.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/readpull.cpp [782/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update_constrain_gpu_impl_stubs.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update_constrain_gpu_impl_stubs.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update_constrain_gpu_impl_stubs.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/update_constrain_gpu_impl_stubs.cpp [783/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdatoms.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdatoms.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdatoms.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/mdatoms.cpp [784/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/expanded.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/expanded.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/expanded.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/expanded.cpp [785/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/md_support.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/md_support.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/md_support.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/md_support.cpp [786/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/mdoutf.cpp [787/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/trajectory_writing.cpp [788/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wholemoleculetransform.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wholemoleculetransform.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wholemoleculetransform.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/wholemoleculetransform.cpp [789/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update_vv.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update_vv.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update_vv.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/update_vv.cpp [790/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/correlationgrid.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/correlationgrid.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/correlationgrid.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/awh/correlationgrid.cpp [791/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/energyoutput.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/energyoutput.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/energyoutput.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/energyoutput.cpp [792/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/pointstate.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/pointstate.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/pointstate.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/awh/pointstate.cpp [793/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biasparams.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biasparams.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biasparams.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/awh/biasparams.cpp [794/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingoutputprovider.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingoutputprovider.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingoutputprovider.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/densityfitting/densityfittingoutputprovider.cpp [795/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/histogramsize.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/histogramsize.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/histogramsize.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/awh/histogramsize.cpp [796/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/wall.cpp [797/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/correlationhistory.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/correlationhistory.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/correlationhistory.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/awh/correlationhistory.cpp [798/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/correlationtensor.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/correlationtensor.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/correlationtensor.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/awh/correlationtensor.cpp [799/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroupscog.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroupscog.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroupscog.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/updategroupscog.cpp [800/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/coordstate.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/coordstate.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/coordstate.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/awh/coordstate.cpp [801/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingparameters.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingparameters.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingparameters.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/densityfitting/densityfittingparameters.cpp [802/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biassharing.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biassharing.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biassharing.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/awh/biassharing.cpp [803/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingamplitudelookup.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingamplitudelookup.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingamplitudelookup.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/densityfitting/densityfittingamplitudelookup.cpp [804/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroups.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroups.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroups.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/updategroups.cpp [805/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vcm.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vcm.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vcm.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/vcm.cpp [806/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/membed.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/membed.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/membed.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/membed.cpp [807/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/bias.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/bias.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/bias.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/awh/bias.cpp [808/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biasgrid.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biasgrid.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biasgrid.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/awh/biasgrid.cpp [809/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/settle.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/settle.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/settle.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/settle.cpp [810/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biaswriter.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biaswriter.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biaswriter.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/awh/biaswriter.cpp [811/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/forcerec.cpp /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/forcerec.cpp: In function ‘std::vector makeLJPmeC6GridCorrectionParameters(int, gmx::ArrayRef, LongRangeVdW)’: /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/forcerec.cpp:181:23: warning: variable ‘k’ set but not used [-Wunused-but-set-variable=] 181 | int k = 0; | ^ At top level: cc1plus: note: unrecognized command-line option ‘-Wno-cast-function-type-strict’ may have been intended to silence earlier diagnostics [812/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/nnpot/binary_information.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/nnpot/binary_information.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/nnpot/binary_information.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/nnpot/binary_information.cpp [813/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/electricfield.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/electricfield.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/electricfield.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/electricfield.cpp [814/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readir.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readir.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readir.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/readir.cpp [815/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarssimulationsparameters.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarssimulationsparameters.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarssimulationsparameters.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/colvars/colvarssimulationsparameters.cpp [816/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmforceprovider_stub.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmforceprovider_stub.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmforceprovider_stub.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/qmmm/qmmmforceprovider_stub.cpp [817/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmforceproviderstate.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmforceproviderstate.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmforceproviderstate.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/qmmm/qmmmforceproviderstate.cpp [818/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/plumed/plumedOptions.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/plumed/plumedOptions.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/plumed/plumedOptions.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/plumed/plumedOptions.cpp [819/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/awh.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/awh.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/awh.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/awh/awh.cpp [820/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/lincs.cpp /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/lincs.cpp: In function ‘void gmx::lincs_update_atoms(Lincs*, int, real, ArrayRef, ArrayRef >, ArrayRef, real (*)[3])’: /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/lincs.cpp:513:19: warning: ‘master’ construct deprecated since OpenMP 5.1, use ‘masked’ [-Wdeprecated-openmp] 513 | #pragma omp master | ^ /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/lincs.cpp: In function ‘void gmx::do_lincs(ArrayRefWithPadding >, ArrayRefWithPadding >, const real (*)[3], t_pbc*, Lincs*, int, ArrayRef, gmx_domdec_t*, bool, real, bool*, real, ArrayRef >, bool, real (*)[3], gmx_wallcycle*)’: /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/lincs.cpp:1189:19: warning: ‘master’ construct deprecated since OpenMP 5.1, use ‘masked’ [-Wdeprecated-openmp] 1189 | #pragma omp master | ^ At top level: cc1plus: note: unrecognized command-line option ‘-Wno-cast-function-type-strict’ may have been intended to silence earlier diagnostics [821/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/listed_internal.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/listed_internal.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/listed_internal.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/listed_forces/listed_internal.cpp [822/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/nnpot/nnpotforceprovider_stub.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/nnpot/nnpotforceprovider_stub.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/nnpot/nnpotforceprovider_stub.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/nnpot/nnpotforceprovider_stub.cpp [823/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sim_util.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sim_util.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sim_util.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/sim_util.cpp [824/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarspreprocessor.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarspreprocessor.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarspreprocessor.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/colvars/colvarspreprocessor.cpp [825/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/listed_forces_gpu_impl.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/listed_forces_gpu_impl.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/listed_forces_gpu_impl.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/listed_forces/listed_forces_gpu_impl.cpp [826/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmminputgenerator.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmminputgenerator.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmminputgenerator.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/qmmm/qmmminputgenerator.cpp [827/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfitting.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfitting.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfitting.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/densityfitting/densityfitting.cpp [828/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/restcbt.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/restcbt.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/restcbt.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/listed_forces/restcbt.cpp [829/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/update.cpp [830/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/read_params.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/read_params.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/read_params.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/awh/read_params.cpp [831/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/plumed/plumedMDModule.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/plumed/plumedMDModule.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/plumed/plumedMDModule.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/plumed/plumedMDModule.cpp [832/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/disre.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/disre.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/disre.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/listed_forces/disre.cpp [833/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingforceprovider.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingforceprovider.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingforceprovider.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/densityfitting/densityfittingforceprovider.cpp [834/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/manage_threading.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/manage_threading.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/manage_threading.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/listed_forces/manage_threading.cpp [835/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarproxygromacs.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarproxygromacs.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarproxygromacs.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/colvars/colvarproxygromacs.cpp [836/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald_utils.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald_utils.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald_utils.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/ewald_utils.cpp [837/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/calculate_spline_moduli.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/calculate_spline_moduli.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/calculate_spline_moduli.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/calculate_spline_moduli.cpp [838/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/position_restraints.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/position_restraints.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/position_restraints.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/listed_forces/position_restraints.cpp [839/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmm.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmm.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmm.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/qmmm/qmmm.cpp [840/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarsMDModule.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarsMDModule.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarsMDModule.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/colvars/colvarsMDModule.cpp [841/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_gpu_buffer_ops.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_gpu_buffer_ops.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_gpu_buffer_ops.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/nbnxm_gpu_buffer_ops.cpp [842/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/long_range_correction.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/long_range_correction.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/long_range_correction.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/long_range_correction.cpp [843/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/nnpot/nnpot.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/nnpot/nnpot.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/nnpot/nnpot.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/nnpot/nnpot.cpp [844/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_program.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_program.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_program.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/pme_gpu_program.cpp [845/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gather.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gather.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gather.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/pme_gather.cpp [846/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_spline_work.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_spline_work.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_spline_work.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/pme_spline_work.cpp [847/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/listed_forces.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/listed_forces.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/listed_forces.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/listed_forces/listed_forces.cpp [848/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/ewald.cpp [849/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarsforceprovider.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarsforceprovider.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarsforceprovider.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/colvars/colvarsforceprovider.cpp [850/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/pairs.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/pairs.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/pairs.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/listed_forces/pairs.cpp [851/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vsite.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vsite.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vsite.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/vsite.cpp [852/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biasstate.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biasstate.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biasstate.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/awh/biasstate.cpp [853/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_coordinate_receiver_gpu_impl.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_coordinate_receiver_gpu_impl.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_coordinate_receiver_gpu_impl.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/pme_coordinate_receiver_gpu_impl.cpp [854/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_pp_comm_gpu_impl.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_pp_comm_gpu_impl.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_pp_comm_gpu_impl.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/pme_pp_comm_gpu_impl.cpp [855/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fft/binary_information.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fft/binary_information.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fft/binary_information.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fft/binary_information.cpp [856/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_force_sender_gpu_impl.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_force_sender_gpu_impl.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_force_sender_gpu_impl.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/pme_force_sender_gpu_impl.cpp [857/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/orires.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/orires.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/orires.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/listed_forces/orires.cpp [858/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_pp.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_pp.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_pp.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/pme_pp.cpp [859/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fft/fft.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fft/fft.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fft/fft.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fft/fft.cpp [860/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_program_impl_ocl.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_program_impl_ocl.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_program_impl_ocl.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/pme_gpu_program_impl_ocl.cpp [861/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpueventsynchronizer_helpers.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpueventsynchronizer_helpers.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpueventsynchronizer_helpers.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gpu_utils/gpueventsynchronizer_helpers.cpp [862/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_ocl_stubs.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_ocl_stubs.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_ocl_stubs.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/pme_gpu_ocl_stubs.cpp [863/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fft/calcgrid.cpp [864/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingoptions.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingoptions.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingoptions.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/densityfitting/densityfittingoptions.cpp [865/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/plumed/plumedforceprovider.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/plumed/plumedforceprovider.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/plumed/plumedforceprovider.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/plumed/plumedforceprovider.cpp [866/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_grid.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_grid.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_grid.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/pme_grid.cpp [867/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/device_stream_manager.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/device_stream_manager.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/device_stream_manager.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gpu_utils/device_stream_manager.cpp [868/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/binary_information.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/binary_information.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/binary_information.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gpu_utils/binary_information.cpp [869/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_redistribute.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_redistribute.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_redistribute.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/pme_redistribute.cpp [870/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/pmalloc.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/pmalloc.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/pmalloc.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gpu_utils/pmalloc.cpp [871/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/clfftinitializer.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/clfftinitializer.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/clfftinitializer.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gpu_utils/clfftinitializer.cpp [872/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fft/parallel_3dfft.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fft/parallel_3dfft.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fft/parallel_3dfft.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fft/parallel_3dfft.cpp [873/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fft/gpu_3dfft.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fft/gpu_3dfft.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fft/gpu_3dfft.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fft/gpu_3dfft.cpp [874/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gpu_utils/gpu_utils.cpp [875/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fft/gpu_3dfft_impl.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fft/gpu_3dfft_impl.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fft/gpu_3dfft_impl.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fft/gpu_3dfft_impl.cpp [876/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_load_balancing.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_load_balancing.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_load_balancing.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/pme_load_balancing.cpp [877/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/nvshmem_manager.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/nvshmem_manager.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/nvshmem_manager.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gpu_utils/nvshmem_manager.cpp [878/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_timings.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_timings.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_timings.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/pme_gpu_timings.cpp [879/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils_impl.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils_impl.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils_impl.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gpu_utils/gpu_utils_impl.cpp [880/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fft/fft_fftw3.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fft/fft_fftw3.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fft/fft_fftw3.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fft/fft_fftw3.cpp [881/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarsoptions.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarsoptions.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarsoptions.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/colvars/colvarsoptions.cpp [882/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fft/gpu_3dfft_ocl.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fft/gpu_3dfft_ocl.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fft/gpu_3dfft_ocl.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fft/gpu_3dfft_ocl.cpp [883/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/hostallocator.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/hostallocator.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/hostallocator.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gpu_utils/hostallocator.cpp [884/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_spread.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_spread.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_spread.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/pme_spread.cpp [885/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/pme_gpu.cpp [886/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/hardware/identifyavx512fmaunits.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/hardware/identifyavx512fmaunits.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/hardware/identifyavx512fmaunits.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/hardware/identifyavx512fmaunits.cpp [887/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fft/fft5d.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fft/fft5d.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fft/fft5d.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fft/fft5d.cpp [888/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_solve.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_solve.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_solve.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/pme_solve.cpp [889/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/device_context_ocl.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/device_context_ocl.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/device_context_ocl.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gpu_utils/device_context_ocl.cpp [890/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_gpu_data_mgmt.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_gpu_data_mgmt.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_gpu_data_mgmt.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/nbnxm_gpu_data_mgmt.cpp [891/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/device_stream_ocl.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/device_stream_ocl.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/device_stream_ocl.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gpu_utils/device_stream_ocl.cpp [892/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/oclutils.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/oclutils.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/oclutils.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gpu_utils/oclutils.cpp [893/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/legacymdrunoptions.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrun/legacymdrunoptions.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/legacymdrunoptions.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/legacymdrunoptions.cpp [894/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -DGMX_SIMD_ENUM_VALUE="gmx::SimdType::Arm_NeonAsimd" -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/hardware/simd_support.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/hardware/simd_support.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/hardware/simd_support.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/hardware/simd_support.cpp [895/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/legacysimulator.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrun/legacysimulator.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/legacysimulator.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/legacysimulator.cpp [896/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/ocl_caching.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/ocl_caching.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/ocl_caching.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gpu_utils/ocl_caching.cpp [897/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/membedholder.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrun/membedholder.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/membedholder.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/membedholder.cpp [898/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/hardware/device_management_common.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/hardware/device_management_common.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/hardware/device_management_common.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/hardware/device_management_common.cpp [899/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/bonded.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/bonded.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/bonded.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/listed_forces/bonded.cpp [900/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/nnpot/nnpotoptions.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/nnpot/nnpotoptions.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/nnpot/nnpotoptions.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/nnpot/nnpotoptions.cpp [901/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_only.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_only.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_only.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/pme_only.cpp [902/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationcontext.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationcontext.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationcontext.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/simulationcontext.cpp [903/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/hardware/device_management_ocl.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/hardware/device_management_ocl.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/hardware/device_management_ocl.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/hardware/device_management_ocl.cpp [904/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/hardware/detecthardware.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/hardware/detecthardware.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/hardware/detecthardware.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/hardware/detecthardware.cpp [905/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion-gen.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion-gen.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion-gen.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/gromacs/utility/baseversion-gen.cpp [906/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/freeenergy.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/freeenergy.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/freeenergy.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrunutility/freeenergy.cpp [907/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationinputhandle.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationinputhandle.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationinputhandle.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/simulationinputhandle.cpp [908/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmoptions.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmoptions.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmoptions.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/qmmm/qmmmoptions.cpp [909/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/print_validation.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/print_validation.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/print_validation.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrunutility/print_validation.cpp [910/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/ocl_compiler.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/ocl_compiler.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/ocl_compiler.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gpu_utils/ocl_compiler.cpp [911/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/hardware/printhardware.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/hardware/printhardware.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/hardware/printhardware.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/hardware/printhardware.cpp [912/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/printtime.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/printtime.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/printtime.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrunutility/printtime.cpp [913/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/logging.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/logging.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/logging.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrunutility/logging.cpp [914/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/mdmodulesnotifiers.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/mdmodulesnotifiers.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/mdmodulesnotifiers.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrunutility/mdmodulesnotifiers.cpp [915/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/binary_information.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrun/binary_information.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/binary_information.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/binary_information.cpp [916/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationinput.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationinput.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationinput.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/simulationinput.cpp [917/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/plainpairlistranges.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/plainpairlistranges.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/plainpairlistranges.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrunutility/plainpairlistranges.cpp [918/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/multisim.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/multisim.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/multisim.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrunutility/multisim.cpp [919/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/hardware/cpuinfo.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/hardware/cpuinfo.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/hardware/cpuinfo.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/hardware/cpuinfo.cpp [920/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/md5.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/md5.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/md5.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/md5.cpp [921/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/replicaexchange.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrun/replicaexchange.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/replicaexchange.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/replicaexchange.cpp [922/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/filetypes.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/filetypes.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/filetypes.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/filetypes.cpp [923/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/confio.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/confio.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/confio.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/confio.cpp [924/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/espio.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/espio.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/espio.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/espio.cpp [925/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/gmxfio.cpp [926/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/g96io.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/g96io.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/g96io.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/g96io.cpp [927/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio_xdr.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio_xdr.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio_xdr.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/gmxfio_xdr.cpp [928/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulatorbuilder.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulatorbuilder.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulatorbuilder.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/simulatorbuilder.cpp [929/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/mimic.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrun/mimic.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/mimic.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/mimic.cpp [930/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/mrcdensitymapheader.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/mrcdensitymapheader.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/mrcdensitymapheader.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/mrcdensitymapheader.cpp [931/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/oenv.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/oenv.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/oenv.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/oenv.cpp [932/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/mrcserializer.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/mrcserializer.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/mrcserializer.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/mrcserializer.cpp [933/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/mtxio.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/mtxio.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/mtxio.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/mtxio.cpp [934/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/rerun.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrun/rerun.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/rerun.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/rerun.cpp [935/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/libxdrf.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/libxdrf.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/libxdrf.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/libxdrf.cpp [936/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/handlerestart.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/handlerestart.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/handlerestart.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrunutility/handlerestart.cpp [937/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/groio.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/groio.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/groio.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/groio.cpp [938/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/timecontrol.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/timecontrol.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/timecontrol.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/timecontrol.cpp [939/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/state_propagator_data_gpu_impl_gpu.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/state_propagator_data_gpu_impl_gpu.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/state_propagator_data_gpu_impl_gpu.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdtypes/state_propagator_data_gpu_impl_gpu.cpp [940/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/pme.cpp [941/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_internal.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_internal.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_internal.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/pme_gpu_internal.cpp [942/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/mdmodules.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrun/mdmodules.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/mdmodules.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/mdmodules.cpp [943/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/hardware/hardwaretopology.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/hardware/hardwaretopology.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/hardware/hardwaretopology.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/hardware/hardwaretopology.cpp [944/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/mrcdensitymap.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/mrcdensitymap.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/mrcdensitymap.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/mrcdensitymap.cpp [945/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/enxio.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/enxio.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/enxio.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/enxio.cpp [946/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/xdrd.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/xdrd.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/xdrd.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/xdrd.cpp [947/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/warninp.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/warninp.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/warninp.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/warninp.cpp [948/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/trrio.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/trrio.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/trrio.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/trrio.cpp [949/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/threadaffinity.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/threadaffinity.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/threadaffinity.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrunutility/threadaffinity.cpp [950/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/xtcio.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/xtcio.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/xtcio.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/xtcio.cpp [951/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/writeps.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/writeps.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/writeps.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/writeps.cpp [952/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/shellfc.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrun/shellfc.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/shellfc.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/shellfc.cpp [953/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/mempool.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/mempool.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/mempool.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/mempool.cpp [954/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/position.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/position.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/position.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/position.cpp [955/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/centerofmass.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/centerofmass.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/centerofmass.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/centerofmass.cpp [956/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/xdr_serializer.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/xdr_serializer.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/xdr_serializer.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/xdr_serializer.cpp [957/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/pdbio.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/pdbio.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/pdbio.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/pdbio.cpp [958/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/trxio.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/trxio.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/trxio.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/trxio.cpp [959/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/selvalue.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/selvalue.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/selvalue.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/selvalue.cpp [960/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/selmethod.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/selmethod.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/selmethod.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/selmethod.cpp [961/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/tngio.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/tngio.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/tngio.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/tngio.cpp [962/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/poscalc.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/poscalc.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/poscalc.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/poscalc.cpp [963/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/xvgr.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/xvgr.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/xvgr.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/xvgr.cpp [964/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoptionbehavior.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoptionbehavior.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoptionbehavior.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/selectionoptionbehavior.cpp [965/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/evaluate.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/evaluate.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/evaluate.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/evaluate.cpp [966/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/scanner_internal.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/scanner_internal.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/scanner_internal.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/scanner_internal.cpp [967/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_distance.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_distance.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_distance.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/sm_distance.cpp [968/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_compare.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_compare.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_compare.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/sm_compare.cpp [969/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/selection.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/selection.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/selection.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/selection.cpp [970/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/nbsearch.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/nbsearch.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/nbsearch.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/nbsearch.cpp [971/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/tpi.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrun/tpi.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/tpi.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/tpi.cpp /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/tpi.cpp: In member function ‘std::pair gmx::TestParticleInsertion::performSingleInsertion(double, int64_t, bool, const gmx::RVec&, t_state*, gmx::MdrunScheduleWorkload*, gmx_wallcycle*, t_nrnb*)’: /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/tpi.cpp:497:85: note: parameter passing for argument of type ‘std::pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 497 | t_nrnb* nrnb) | ^ [972/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoptionmanager.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoptionmanager.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoptionmanager.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/selectionoptionmanager.cpp [973/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dnblib_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -Wno-cast-function-type-strict -MD -MT api/nblib/CMakeFiles/nblib.dir/box.cpp.o -MF api/nblib/CMakeFiles/nblib.dir/box.cpp.o.d -o api/nblib/CMakeFiles/nblib.dir/box.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib/box.cpp [974/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_position.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_position.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_position.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/sm_position.cpp [975/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_insolidangle.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_insolidangle.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_insolidangle.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/sm_insolidangle.cpp [976/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_merge.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_merge.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_merge.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/sm_merge.cpp [977/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_permute.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_permute.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_permute.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/sm_permute.cpp [978/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/selhelp.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/selhelp.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/selhelp.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/selhelp.cpp [979/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/readinp.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/readinp.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/readinp.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/readinp.cpp [980/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/selelem.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/selelem.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/selelem.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/selelem.cpp [981/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/minimize.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrun/minimize.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/minimize.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/minimize.cpp [982/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/indexutil.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/indexutil.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/indexutil.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/indexutil.cpp [983/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/md.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrun/md.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/md.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/md.cpp [984/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dnblib_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -Wno-cast-function-type-strict -MD -MT api/nblib/CMakeFiles/nblib.dir/particletype.cpp.o -MF api/nblib/CMakeFiles/nblib.dir/particletype.cpp.o.d -o api/nblib/CMakeFiles/nblib.dir/particletype.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib/particletype.cpp [985/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoption.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoption.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoption.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/selectionoption.cpp [986/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dnblib_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -Wno-cast-function-type-strict -MD -MT api/nblib/CMakeFiles/nblib.dir/topologyhelpers.cpp.o -MF api/nblib/CMakeFiles/nblib.dir/topologyhelpers.cpp.o.d -o api/nblib/CMakeFiles/nblib.dir/topologyhelpers.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib/topologyhelpers.cpp [987/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_same.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_same.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_same.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/sm_same.cpp [988/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dnblib_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -Wno-cast-function-type-strict -MD -MT api/nblib/CMakeFiles/nblib.dir/virials.cpp.o -MF api/nblib/CMakeFiles/nblib.dir/virials.cpp.o.d -o api/nblib/CMakeFiles/nblib.dir/virials.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib/virials.cpp [989/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -Dgmxapi_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/gmxapi/cpp -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT api/gmxapi/CMakeFiles/gmxapi.dir/cpp/exceptions.cpp.o -MF api/gmxapi/CMakeFiles/gmxapi.dir/cpp/exceptions.cpp.o.d -o api/gmxapi/CMakeFiles/gmxapi.dir/cpp/exceptions.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/gmxapi/cpp/exceptions.cpp [990/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/symrec.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/symrec.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/symrec.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/symrec.cpp [991/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_simple.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_simple.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_simple.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/sm_simple.cpp [992/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -Dgmxapi_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/gmxapi/cpp -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT api/gmxapi/CMakeFiles/gmxapi.dir/cpp/mdmodule.cpp.o -MF api/gmxapi/CMakeFiles/gmxapi.dir/cpp/mdmodule.cpp.o.d -o api/gmxapi/CMakeFiles/gmxapi.dir/cpp/mdmodule.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/gmxapi/cpp/mdmodule.cpp [993/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/parsetree.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/parsetree.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/parsetree.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/parsetree.cpp [994/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -Dgmxapi_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/gmxapi/cpp -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT api/gmxapi/CMakeFiles/gmxapi.dir/cpp/gmxapi.cpp.o -MF api/gmxapi/CMakeFiles/gmxapi.dir/cpp/gmxapi.cpp.o.d -o api/gmxapi/CMakeFiles/gmxapi.dir/cpp/gmxapi.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/gmxapi/cpp/gmxapi.cpp [995/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dnblib_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -Wno-cast-function-type-strict -MD -MT api/nblib/CMakeFiles/nblib.dir/integrator.cpp.o -MF api/nblib/CMakeFiles/nblib.dir/integrator.cpp.o.d -o api/nblib/CMakeFiles/nblib.dir/integrator.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib/integrator.cpp [996/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -Dgmxapi_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/gmxapi/cpp -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT api/gmxapi/CMakeFiles/gmxapi.dir/cpp/status.cpp.o -MF api/gmxapi/CMakeFiles/gmxapi.dir/cpp/status.cpp.o.d -o api/gmxapi/CMakeFiles/gmxapi.dir/cpp/status.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/gmxapi/cpp/status.cpp [997/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -Dgmxapi_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/gmxapi/cpp -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT api/gmxapi/CMakeFiles/gmxapi.dir/cpp/version.cpp.o -MF api/gmxapi/CMakeFiles/gmxapi.dir/cpp/version.cpp.o.d -o api/gmxapi/CMakeFiles/gmxapi.dir/cpp/version.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/gmxapi/cpp/version.cpp [998/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -Dgmxapi_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/gmxapi/cpp -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT api/gmxapi/CMakeFiles/gmxapi.dir/cpp/resourceassignment.cpp.o -MF api/gmxapi/CMakeFiles/gmxapi.dir/cpp/resourceassignment.cpp.o.d -o api/gmxapi/CMakeFiles/gmxapi.dir/cpp/resourceassignment.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/gmxapi/cpp/resourceassignment.cpp [999/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/params.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/params.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/params.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/params.cpp [1000/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dnblib_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -Wno-cast-function-type-strict -MD -MT api/nblib/CMakeFiles/nblib.dir/util/setup.cpp.o -MF api/nblib/CMakeFiles/nblib.dir/util/setup.cpp.o.d -o api/nblib/CMakeFiles/nblib.dir/util/setup.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib/util/setup.cpp [1001/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/selectioncollection.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/selectioncollection.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/selectioncollection.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/selectioncollection.cpp [1002/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -Dgmxapi_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/gmxapi/cpp -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT api/gmxapi/CMakeFiles/gmxapi.dir/cpp/workflow.cpp.o -MF api/gmxapi/CMakeFiles/gmxapi.dir/cpp/workflow.cpp.o.d -o api/gmxapi/CMakeFiles/gmxapi.dir/cpp/workflow.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/gmxapi/cpp/workflow.cpp [1003/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dnblib_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -Wno-cast-function-type-strict -MD -MT api/nblib/CMakeFiles/nblib.dir/particlesequencer.cpp.o -MF api/nblib/CMakeFiles/nblib.dir/particlesequencer.cpp.o.d -o api/nblib/CMakeFiles/nblib.dir/particlesequencer.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib/particlesequencer.cpp [1004/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -Dgmxapi_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/gmxapi/cpp -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT api/gmxapi/CMakeFiles/gmxapi.dir/cpp/md.cpp.o -MF api/gmxapi/CMakeFiles/gmxapi.dir/cpp/md.cpp.o.d -o api/gmxapi/CMakeFiles/gmxapi.dir/cpp/md.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/gmxapi/cpp/md.cpp [1005/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/compiler.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/compiler.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/compiler.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/compiler.cpp [1006/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dnblib_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -Wno-cast-function-type-strict -MD -MT api/nblib/CMakeFiles/nblib.dir/listed_forces/transformations.cpp.o -MF api/nblib/CMakeFiles/nblib.dir/listed_forces/transformations.cpp.o.d -o api/nblib/CMakeFiles/nblib.dir/listed_forces/transformations.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib/listed_forces/transformations.cpp [1007/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fopenmp -MD -MT share/template/CMakeFiles/template.dir/template.cpp.o -MF share/template/CMakeFiles/template.dir/template.cpp.o.d -o share/template/CMakeFiles/template.dir/template.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/share/template/template.cpp [1008/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -Dgmxapi_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/gmxapi/cpp -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT api/gmxapi/CMakeFiles/gmxapi.dir/cpp/system.cpp.o -MF api/gmxapi/CMakeFiles/gmxapi.dir/cpp/system.cpp.o.d -o api/gmxapi/CMakeFiles/gmxapi.dir/cpp/system.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/gmxapi/cpp/system.cpp [1009/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -Dgmxapi_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/gmxapi/cpp -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT api/gmxapi/CMakeFiles/gmxapi.dir/cpp/mdsignals.cpp.o -MF api/gmxapi/CMakeFiles/gmxapi.dir/cpp/mdsignals.cpp.o.d -o api/gmxapi/CMakeFiles/gmxapi.dir/cpp/mdsignals.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/gmxapi/cpp/mdsignals.cpp [1010/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dnblib_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -Wno-cast-function-type-strict -MD -MT api/nblib/CMakeFiles/nblib.dir/interactions.cpp.o -MF api/nblib/CMakeFiles/nblib.dir/interactions.cpp.o.d -o api/nblib/CMakeFiles/nblib.dir/interactions.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib/interactions.cpp [1011/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dnblib_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -Wno-cast-function-type-strict -MD -MT api/nblib/CMakeFiles/nblib.dir/nbnxmsetuphelpers.cpp.o -MF api/nblib/CMakeFiles/nblib.dir/nbnxmsetuphelpers.cpp.o.d -o api/nblib/CMakeFiles/nblib.dir/nbnxmsetuphelpers.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib/nbnxmsetuphelpers.cpp [1012/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dnblib_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -Wno-cast-function-type-strict -MD -MT api/nblib/CMakeFiles/nblib.dir/gmxcalculatorcpu.cpp.o -MF api/nblib/CMakeFiles/nblib.dir/gmxcalculatorcpu.cpp.o.d -o api/nblib/CMakeFiles/nblib.dir/gmxcalculatorcpu.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib/gmxcalculatorcpu.cpp [1013/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dnblib_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -Wno-cast-function-type-strict -MD -MT api/nblib/CMakeFiles/nblib.dir/listed_forces/conversions.cpp.o -MF api/nblib/CMakeFiles/nblib.dir/listed_forces/conversions.cpp.o.d -o api/nblib/CMakeFiles/nblib.dir/listed_forces/conversions.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib/listed_forces/conversions.cpp [1014/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -Dgmxapi_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/gmxapi/cpp -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT api/gmxapi/CMakeFiles/gmxapi.dir/cpp/session.cpp.o -MF api/gmxapi/CMakeFiles/gmxapi.dir/cpp/session.cpp.o.d -o api/gmxapi/CMakeFiles/gmxapi.dir/cpp/session.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/gmxapi/cpp/session.cpp [1015/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -Dgmxapi_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/gmxapi/cpp -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT api/gmxapi/CMakeFiles/gmxapi.dir/cpp/context.cpp.o -MF api/gmxapi/CMakeFiles/gmxapi.dir/cpp/context.cpp.o.d -o api/gmxapi/CMakeFiles/gmxapi.dir/cpp/context.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/gmxapi/cpp/context.cpp [1016/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/checkpoint.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/checkpoint.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/checkpoint.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/checkpoint.cpp [1017/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dnblib_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -Wno-cast-function-type-strict -MD -MT api/nblib/CMakeFiles/nblib.dir/simulationstate.cpp.o -MF api/nblib/CMakeFiles/nblib.dir/simulationstate.cpp.o.d -o api/nblib/CMakeFiles/nblib.dir/simulationstate.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib/simulationstate.cpp [1018/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dnblib_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -Wno-cast-function-type-strict -MD -MT api/nblib/CMakeFiles/nblib.dir/tpr.cpp.o -MF api/nblib/CMakeFiles/nblib.dir/tpr.cpp.o.d -o api/nblib/CMakeFiles/nblib.dir/tpr.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib/tpr.cpp [1019/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dnblib_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -Wno-cast-function-type-strict -MD -MT api/nblib/CMakeFiles/nblib.dir/listed_forces/convertGmxToNblib.cpp.o -MF api/nblib/CMakeFiles/nblib.dir/listed_forces/convertGmxToNblib.cpp.o.d -o api/nblib/CMakeFiles/nblib.dir/listed_forces/convertGmxToNblib.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib/listed_forces/convertGmxToNblib.cpp [1020/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/runner.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrun/runner.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/runner.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/runner.cpp [1021/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dnblib_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -Wno-cast-function-type-strict -MD -MT api/nblib/CMakeFiles/nblib.dir/molecules.cpp.o -MF api/nblib/CMakeFiles/nblib.dir/molecules.cpp.o.d -o api/nblib/CMakeFiles/nblib.dir/molecules.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib/molecules.cpp [1022/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fopenmp -MD -MT api/nblib/samples/CMakeFiles/argon-forces-integration.dir/argon-forces-integration.cpp.o -MF api/nblib/samples/CMakeFiles/argon-forces-integration.dir/argon-forces-integration.cpp.o.d -o api/nblib/samples/CMakeFiles/argon-forces-integration.dir/argon-forces-integration.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib/samples/argon-forces-integration.cpp [1023/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/tpxio.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/tpxio.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/tpxio.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/tpxio.cpp [1024/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/matio.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/matio.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/matio.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/matio.cpp [1025/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -Dgmxapi_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/gmxapi/cpp -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT api/gmxapi/CMakeFiles/gmxapi.dir/cpp/tpr.cpp.o -MF api/gmxapi/CMakeFiles/gmxapi.dir/cpp/tpr.cpp.o.d -o api/gmxapi/CMakeFiles/gmxapi.dir/cpp/tpr.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/gmxapi/cpp/tpr.cpp [1026/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fopenmp -MD -MT api/nblib/samples/CMakeFiles/methane-water-integration.dir/methane-water-integration.cpp.o -MF api/nblib/samples/CMakeFiles/methane-water-integration.dir/methane-water-integration.cpp.o.d -o api/nblib/samples/CMakeFiles/methane-water-integration.dir/methane-water-integration.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib/samples/methane-water-integration.cpp [1027/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_keywords.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_keywords.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_keywords.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/sm_keywords.cpp [1028/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dnblib_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -Wno-cast-function-type-strict -MD -MT api/nblib/CMakeFiles/nblib.dir/listed_forces/calculator.cpp.o -MF api/nblib/CMakeFiles/nblib.dir/listed_forces/calculator.cpp.o.d -o api/nblib/CMakeFiles/nblib.dir/listed_forces/calculator.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib/listed_forces/calculator.cpp [1029/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/freeenergykernel.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/freeenergykernel.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/freeenergykernel.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/freeenergykernel.cpp [1030/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dnblib_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -Wno-cast-function-type-strict -MD -MT api/nblib/CMakeFiles/nblib.dir/topology.cpp.o -MF api/nblib/CMakeFiles/nblib.dir/topology.cpp.o.d -o api/nblib/CMakeFiles/nblib.dir/topology.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib/topology.cpp [1031/1040] : && /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=src/gromacs/CMakeFiles/libgromacs.dir/link.d -Wl,-soname,libgromacs.so.11 -o lib/libgromacs.so.11.0.0 src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/alltoall.cpp.o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_protocol.cpp.o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/barrier.cpp.o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_send_recv.cpp.o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/bcast.cpp.o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_wait.cpp.o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/collective.cpp.o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/profile.cpp.o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/comm.cpp.o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/reduce.cpp.o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/event.cpp.o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/reduce_fast.cpp.o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/gather.cpp.o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/scatter.cpp.o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/group.cpp.o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_init.cpp.o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/topology.cpp.o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/list.cpp.o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/type.cpp.o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/scan.cpp.o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/numa_malloc.cpp.o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/once.cpp.o src/gromacs/selection/CMakeFiles/scanner.dir/parser.cpp.o src/gromacs/selection/CMakeFiles/scanner.dir/scanner.cpp.o src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/accessors.cpp.o src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/action.transpose.cpp.o src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/enqueue.cpp.o src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/fft_binary_lookup.cpp.o src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.copy.cpp.o src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.stockham.cpp.o src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.transpose.cpp.o src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.transpose.gcn.cpp.o src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/lifetime.cpp.o src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/md5sum.cpp.o src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/plan.cpp.o src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/repo.cpp.o src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/stdafx.cpp.o src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/transform.cpp.o src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.CPU.cpp.o src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.GPU.cpp.o src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.extern.cpp.o src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/stdafx.cpp.o src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr.cpp.o src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr_array.cpp.o src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr_float.cpp.o src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr_stdio.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar_neuralnetworkcompute.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvaratoms.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abf.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abmd.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_alb.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram_reweight_amd.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_meta.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_opes.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_restraint.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_alchlambda.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_angles.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_apath.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_combination.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_coordnums.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_distances.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_gpath.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_neuralnetwork.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_protein.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_rotations.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_torchann.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_volmaps.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvardeps.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid_integrate.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarmodule.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparams.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparse.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_io.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_replicas.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_system.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_tcl.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_volmaps.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvars_memstream.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_bias.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_colvar.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvartypes.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarvalue.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/nr_jacobi.cpp.o src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/energyterm.cpp.o src/gromacs/fmm/CMakeFiles/fmm.dir/fmm_mdmodule.cpp.o src/gromacs/fmm/CMakeFiles/fmm.dir/fmm_mdpoptions.cpp.o src/gromacs/fmm/CMakeFiles/fmm.dir/fmm_mdpvalidator.cpp.o src/gromacs/fmm/CMakeFiles/fmm.dir/fmmforceproviderbuilder.cpp.o src/gromacs/fmm/CMakeFiles/fmm.dir/fmmoptions.cpp.o src/gromacs/fmm/CMakeFiles/fmm.dir/fmmforceprovider_stub.cpp.o src/gromacs/fileio/h5md/CMakeFiles/h5md.dir/h5md.cpp.o src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/binary_information.cpp.o src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/eigensolver.cpp.o src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/matrix.cpp.o src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/andersentemperaturecoupling.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/constraintelement.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/domdechelper.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/energydata.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/expandedensembleelement.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/firstorderpressurecoupling.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/forceelement.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/freeenergyperturbationdata.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/modularsimulator.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/mttk.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/nosehooverchains.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/pmeloadbalancehelper.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/propagator.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/pullelement.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/referencetemperaturemanager.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/signallers.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/simulatoralgorithm.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/topologyholder.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/velocityscalingtemperaturecoupling.cpp.o src/gromacs/options/CMakeFiles/options.dir/abstractoption.cpp.o src/gromacs/options/CMakeFiles/options.dir/abstractsection.cpp.o src/gromacs/options/CMakeFiles/options.dir/basicoptions.cpp.o src/gromacs/options/CMakeFiles/options.dir/behaviorcollection.cpp.o src/gromacs/options/CMakeFiles/options.dir/filenameoption.cpp.o src/gromacs/options/CMakeFiles/options.dir/filenameoptionmanager.cpp.o src/gromacs/options/CMakeFiles/options.dir/options.cpp.o src/gromacs/options/CMakeFiles/options.dir/optionsassigner.cpp.o src/gromacs/options/CMakeFiles/options.dir/optionsection.cpp.o src/gromacs/options/CMakeFiles/options.dir/optionsvisitor.cpp.o src/gromacs/options/CMakeFiles/options.dir/timeunitmanager.cpp.o src/gromacs/options/CMakeFiles/options.dir/treesupport.cpp.o src/gromacs/pulling/CMakeFiles/pulling.dir/output.cpp.o src/gromacs/pulling/CMakeFiles/pulling.dir/pull.cpp.o src/gromacs/pulling/CMakeFiles/pulling.dir/pull_rotation.cpp.o src/gromacs/pulling/CMakeFiles/pulling.dir/pullcoordexpressionparser.cpp.o src/gromacs/pulling/CMakeFiles/pulling.dir/pullutil.cpp.o src/gromacs/pulling/CMakeFiles/pulling.dir/transformationcoordinate.cpp.o src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/decidegpuusage.cpp.o src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/decidesimulationworkload.cpp.o src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/findallgputasks.cpp.o src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/reportgpuusage.cpp.o src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/resourcedivision.cpp.o src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/taskassignment.cpp.o src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/usergpuids.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/any.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/basenetwork.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/booltype.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/compare.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/coolstuff.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/cstringutil.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/datafilefinder.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/directoryenumerator.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/errorcodes.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/errorformat.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/exceptions.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/fatalerror.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/fileredirector.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/filestream.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/futil.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxassert.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxomp.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/ikeyvaluetreeerror.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/init.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/int64_to_int.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetree.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreemdpwriter.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreetransform.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/logger.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/loggerbuilder.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/message_string_collector.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/mpicomm.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/mpiinfo.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/niceheader.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/path.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/physicalnodecommunicator.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/pleasecite.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/programcontext.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/smalloc.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/strconvert.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/strdb.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/stringstream.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/stringutil.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/sysinfo.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/textreader.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/veccompare.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/vecdump.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/atomdata.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_setup.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_system.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/exclusionchecker.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/freeenergydispatch.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/freeenergykernel.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/grid.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/gridset.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernel_common.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kerneldispatch.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_gpu_ref.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_1x1.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_4x4.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_prune.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_geometry.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_setup.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist_simd_kernel.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist_tuning.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistparams.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistset.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistsets.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistwork.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairsearch.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/prunekerneldispatch.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/simd_energy_accumulator.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/simd_prune_kernel.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_gpu_buffer_ops_internal_ocl.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl_data_mgmt.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl_jit_support.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpwriter.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineinit.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodule.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodulemanager.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodulesettings.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineoptionsmodule.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/commandline/filenm.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/commandline/pargs.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/commandline/shellcompletions.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/commandline/viewit.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/atomdistribution.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/box.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/cellsizes.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/collect.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/computemultibodycutoffs.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/distribute.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlb.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/domainpaircomm.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_zones.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/dump.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/haloexchange.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/haloexchangesetup.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomset.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetdata.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetmanager.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/localtopology.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/localtopologychecker.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/makebondedlinks.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/mdsetup.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/nsgrid.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/partition.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/reversetopology.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/utility.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/gpuhaloexchange_impl.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/math/coordinatetransformation.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/math/densityfit.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/math/densityfittingforce.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/math/do_fit.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/math/exponentialmovingaverage.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/math/functions.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/math/gausstransform.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/math/invertmatrix.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/math/neldermead.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/math/nrjac.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/math/optimization.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/math/utilities.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/awh_history.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/checkpointdata.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/commrec.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/df_history.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/energyhistory.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/forcebuffers.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/group.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/iforceprovider.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/inputrec.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/interaction_const.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/md_enums.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/multipletimestepping.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/observableshistory.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/observablesreducer.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/state.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/threaded_force_buffer.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpformat.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helptopic.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpwritercontext.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/rstparser.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/boxutilities.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/com.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/mshift.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc_simd.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbcenums.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbcmethods.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/rmpbc.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/random/seed.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/random/tabulatednormaldistribution.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/restraint/manager.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/restraint/restraintmdmodule.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/serialization/inmemoryserializer.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/serialization/keyvaluetreeserializer.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/tables/cubicsplinetable.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/tables/forcetable.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/tables/quadraticsplinetable.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/tables/splineutil.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/timing/cyclecounter.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/timing/external_tracing.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/timing/wallcycle.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/timing/walltime_accounting.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/topology/atomprop.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/topology/atoms.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/topology/atomsbuilder.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/topology/block.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/topology/embedded_system_preprocessing.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/topology/exclusionblocks.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/topology/forcefieldparameters.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/topology/idef.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/topology/ifunc.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/topology/index.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/topology/invblock.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/topology/mtop_atomloops.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/topology/mtop_util.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/topology/residuetypes.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/topology/symtab.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/topology/topology.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/topology/topsort.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectory/energyframe.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectory/trajectoryframe.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/swap/swapcoords.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/essentialdynamics/edsam.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/imd/imd.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/imd/imdsocket.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mimic/communicator_stub.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mimic/utilities.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/anadih.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/angle_correction.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/binsearch.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/cluster_methods.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/cmat.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/dens_filter.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/dlist.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/eigio.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/fitahx.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_anaeig.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_analyze.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_angle.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_awh.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_bar.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_bundle.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_chi.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_cluster.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_clustsize.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_confrms.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_covar.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_current.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_density.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_densmap.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_densorder.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dielectric.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dipoles.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_disre.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dos.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dyecoupl.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_enemat.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_energy.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_filter.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_gyrate.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_h2order.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_hbond.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_helix.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_helixorient.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_hydorder.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_lie.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_make_edi.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_mdmat.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_mindist.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmeig.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmens.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmr.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmtraj.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_order.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_polystat.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_potential.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_principal.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rama.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rms.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rmsdist.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rmsf.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rotacf.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rotmat.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_saltbr.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sans.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_saxs.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sham.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sigeps.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sorient.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_spatial.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_spol.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_tcaf.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_traj.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_trjorder.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_vanhove.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_velacc.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_wham.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_wheel.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_xpm2ps.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/hxprops.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/nrama.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/nsfactor.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/powerspect.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/pp2shift.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/princ.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/sfactor.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/thermochemistry.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/add_par.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/calch.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/compute_io.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/convparm.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/editconf.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/fflibutil.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_ad.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_maxwell_velocities.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_vsite.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genconf.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genhydro.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genion.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genrestr.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gmxcpp.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_atomtype.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_bond_atomtype.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_nextnb.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/grompp.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/h_db.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/hackblock.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/hizzie.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/insert_molecules.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/makeexclusiondistances.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/massrepartitioning.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/nm2type.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2gmx.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2top.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pgutil.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readir.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readpull.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readrot.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/resall.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/solvate.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/specbond.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/ter_db.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/tomorse.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topdirs.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topio.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/toppush.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topshake.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/toputil.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/vsite_parm.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/x2top.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/xlate.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/autocorr.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/crosscorr.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/expfit.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/gmx_lmcurve.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/integrate.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/manyautocorrelation.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/polynomials.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/statistics/statistics.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/abstractdata.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/analysisdata.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/arraydata.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/dataframe.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datamodule.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datamodulemanager.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/dataproxy.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datastorage.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/average.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/displacement.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/frameaverager.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/histogram.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/lifetime.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/plot.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/coordinatefile.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/frameconverters/register.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadaptercontainer.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/outputselector.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setatoms.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setforces.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setprecision.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setstarttime.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/settimestep.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setvelocities.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/requirements.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/analysismodule.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/analysissettings.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/cmdlinerunner.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/angle.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/convert_trj.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/distance.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/dssp.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/extract_cluster.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/freevolume.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/gyrate.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/hbond.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/isotope.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/msd.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/pairdist.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/rdf.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/sasa.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering-debye-sans.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering-debye-saxs.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering-debye.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scatteringfactors.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/select.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/surfacearea.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/trajectory.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/runnercommon.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/topologyinformation.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/tools/check.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/tools/convert_tpr.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/tools/dump.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/tools/eneconv.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/tools/make_ndx.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/tools/mk_angndx.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/tools/pme_error.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/tools/report_methods.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/tools/trjcat.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/tools/trjconv.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/tools/tune_pme.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/conformation_utilities.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/network.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nrnb.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/boxdeformation.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/broadcaststructs.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calc_verletbuf.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calcmu.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calcvir.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/checkpointhandler.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constr.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constraint_gpu_helpers.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constraintrange.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/coupling.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/dispersioncorrection.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/ebin.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/enerdata_utils.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/energydrifttracker.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/energyoutput.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/expanded.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/expanded_internal.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/force.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/freeenergyparameters.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/gmx_omp_nthreads.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/lincs_constraint_group_sizes.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/md_support.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdatoms.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdgraph_gpu_impl.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/membed.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/resethandler.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rf_util.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/settle.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/shake.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sighandler.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sim_util.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/simulationsignal.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/splitter.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stat.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stophandler.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/tgroup.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update_vv.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroups.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroupscog.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vcm.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vsite.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wholemoleculetransform.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/gpuforcereduction_impl_stubs.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update_constrain_gpu_impl_stubs.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/electricfield.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/awh.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/bias.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biasgrid.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biasparams.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biassharing.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biasstate.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biaswriter.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/coordstate.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/correlationgrid.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/correlationhistory.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/correlationtensor.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/histogramsize.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/pointstate.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/read_params.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfitting.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingamplitudelookup.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingforceprovider.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingoptions.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingoutputprovider.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingparameters.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmminputgenerator.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmforceproviderstate.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmoptions.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmm.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmforceprovider_stub.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarsMDModule.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarsoptions.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarspreprocessor.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarssimulationsparameters.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarsforceprovider.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarproxygromacs.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/plumed/plumedforceprovider.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/plumed/plumedOptions.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/plumed/plumedMDModule.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/nnpot/binary_information.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/nnpot/nnpotoptions.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/nnpot/nnpot.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/nnpot/nnpotforceprovider_stub.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/bonded.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/disre.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/listed_forces_gpu_impl.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/listed_forces.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/listed_internal.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/manage_threading.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/orires.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/pairs.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/position_restraints.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/restcbt.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_gpu_data_mgmt.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_gpu_buffer_ops.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/calculate_spline_moduli.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald_utils.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/long_range_correction.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gather.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_grid.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_load_balancing.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_only.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_pp.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_redistribute.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_solve.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_spline_work.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_spread.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_program.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_program_impl_ocl.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_ocl_stubs.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_pp_comm_gpu_impl.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_coordinate_receiver_gpu_impl.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_force_sender_gpu_impl.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_internal.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_timings.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fft/binary_information.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fft/fft.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fft/fft5d.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fft/parallel_3dfft.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fft/fft_fftw3.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fft/gpu_3dfft_ocl.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fft/gpu_3dfft_impl.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fft/gpu_3dfft.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/binary_information.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/clfftinitializer.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/device_stream_manager.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpueventsynchronizer_helpers.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/hostallocator.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/nvshmem_manager.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/device_context_ocl.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/device_stream_ocl.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils_impl.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/pmalloc.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/ocl_compiler.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/ocl_caching.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/oclutils.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/hardware/cpuinfo.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/hardware/detecthardware.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/hardware/device_management_common.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/hardware/hardwaretopology.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/hardware/printhardware.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/hardware/identifyavx512fmaunits.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/hardware/simd_support.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/hardware/device_management_ocl.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/binary_information.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/legacymdrunoptions.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/legacysimulator.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/md.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/mdmodules.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/membedholder.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/mimic.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/minimize.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/replicaexchange.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/rerun.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/runner.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/shellfc.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationcontext.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationinput.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationinputhandle.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulatorbuilder.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/tpi.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/freeenergy.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/handlerestart.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/logging.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/mdmodulesnotifiers.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/multisim.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/plainpairlistranges.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/print_validation.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/printtime.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/threadaffinity.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/state_propagator_data_gpu_impl_gpu.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion-gen.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/checkpoint.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/confio.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/enxio.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/espio.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/filetypes.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/g96io.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio_xdr.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/groio.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/libxdrf.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/matio.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/md5.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/mrcdensitymap.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/mrcdensitymapheader.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/mrcserializer.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/mtxio.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/oenv.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/pdbio.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/readinp.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/timecontrol.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/tngio.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/tpxio.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/trrio.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/trxio.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/warninp.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/writeps.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/xdr_serializer.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/xdrd.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/xtcio.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/xvgr.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/centerofmass.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/compiler.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/evaluate.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/indexutil.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/mempool.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/nbsearch.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/params.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/parsetree.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/poscalc.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/position.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/scanner_internal.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/selection.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/selectioncollection.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoption.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoptionbehavior.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoptionmanager.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/selelem.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/selhelp.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/selmethod.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/selvalue.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_compare.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_distance.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_insolidangle.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_keywords.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_merge.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_permute.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_position.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_same.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_simple.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/symrec.cpp.o -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a /usr/lib64/libmuparser.so.2.3.5 /usr/lib64/liblmfit.so -ldl && : In member function ‘performSingleInsertion’: lto1: note: parameter passing for argument of type ‘struct pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 [1032/1040] /usr/bin/cmake -E cmake_symlink_library lib/libgromacs.so.11.0.0 lib/libgromacs.so.11 lib/libgromacs.so && : [1033/1040] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=share/template/CMakeFiles/template.dir/link.d share/template/CMakeFiles/template.dir/template.cpp.o -o bin/template -Wl,-rpath,/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/lib lib/libgromacs.so.11.0.0 -lm /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a && : [1034/1040] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=src/programs/CMakeFiles/gmx.dir/link.d src/programs/CMakeFiles/gmx_objlib.dir/gmx.cpp.o src/programs/CMakeFiles/gmx_objlib.dir/legacymodules.cpp.o src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o bin/gmx -Wl,-rpath,/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/lib: lib/libgromacs.so.11.0.0 -lm /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a && : [1035/1040] : && /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=api/gmxapi/CMakeFiles/gmxapi.dir/link.d -Wl,-soname,libgmxapi.so.0 -o lib/libgmxapi.so.0.4.0 api/gmxapi/CMakeFiles/gmxapi.dir/cpp/resourceassignment.cpp.o api/gmxapi/CMakeFiles/gmxapi.dir/cpp/context.cpp.o api/gmxapi/CMakeFiles/gmxapi.dir/cpp/exceptions.cpp.o api/gmxapi/CMakeFiles/gmxapi.dir/cpp/gmxapi.cpp.o api/gmxapi/CMakeFiles/gmxapi.dir/cpp/md.cpp.o api/gmxapi/CMakeFiles/gmxapi.dir/cpp/mdmodule.cpp.o api/gmxapi/CMakeFiles/gmxapi.dir/cpp/mdsignals.cpp.o api/gmxapi/CMakeFiles/gmxapi.dir/cpp/session.cpp.o api/gmxapi/CMakeFiles/gmxapi.dir/cpp/status.cpp.o api/gmxapi/CMakeFiles/gmxapi.dir/cpp/system.cpp.o api/gmxapi/CMakeFiles/gmxapi.dir/cpp/version.cpp.o api/gmxapi/CMakeFiles/gmxapi.dir/cpp/workflow.cpp.o api/gmxapi/CMakeFiles/gmxapi.dir/cpp/tpr.cpp.o -Wl,-rpath,/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/lib: lib/libgromacs.so.11.0.0 -lm /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a && : [1036/1040] /usr/bin/cmake -E cmake_symlink_library lib/libgmxapi.so.0.4.0 lib/libgmxapi.so.0 lib/libgmxapi.so && : [1037/1040] : && /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=api/nblib/CMakeFiles/nblib.dir/link.d -Wl,-soname,libnblib_gmx.so.0 -o lib/libnblib_gmx.so.0.1.0 api/nblib/CMakeFiles/nblib.dir/box.cpp.o api/nblib/CMakeFiles/nblib.dir/gmxcalculatorcpu.cpp.o api/nblib/CMakeFiles/nblib.dir/integrator.cpp.o api/nblib/CMakeFiles/nblib.dir/interactions.cpp.o api/nblib/CMakeFiles/nblib.dir/molecules.cpp.o api/nblib/CMakeFiles/nblib.dir/nbnxmsetuphelpers.cpp.o api/nblib/CMakeFiles/nblib.dir/particlesequencer.cpp.o api/nblib/CMakeFiles/nblib.dir/particletype.cpp.o api/nblib/CMakeFiles/nblib.dir/simulationstate.cpp.o api/nblib/CMakeFiles/nblib.dir/topologyhelpers.cpp.o api/nblib/CMakeFiles/nblib.dir/topology.cpp.o api/nblib/CMakeFiles/nblib.dir/tpr.cpp.o api/nblib/CMakeFiles/nblib.dir/virials.cpp.o api/nblib/CMakeFiles/nblib.dir/listed_forces/calculator.cpp.o api/nblib/CMakeFiles/nblib.dir/listed_forces/transformations.cpp.o api/nblib/CMakeFiles/nblib.dir/listed_forces/conversions.cpp.o api/nblib/CMakeFiles/nblib.dir/listed_forces/convertGmxToNblib.cpp.o api/nblib/CMakeFiles/nblib.dir/util/setup.cpp.o -Wl,-rpath,/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/lib: -lm lib/libgromacs.so.11.0.0 -lm /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a /usr/lib64/libmuparser.so.2.3.5 && : [1038/1040] /usr/bin/cmake -E cmake_symlink_library lib/libnblib_gmx.so.0.1.0 lib/libnblib_gmx.so.0 lib/libnblib_gmx.so && : [1039/1040] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=api/nblib/samples/CMakeFiles/argon-forces-integration.dir/link.d api/nblib/samples/CMakeFiles/argon-forces-integration.dir/argon-forces-integration.cpp.o -o bin/argon-forces-integration -Wl,-rpath,/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/lib lib/libnblib_gmx.so.0.1.0 -lm /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -Wl,-rpath-link,/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/lib && : [1040/1040] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=api/nblib/samples/CMakeFiles/methane-water-integration.dir/link.d api/nblib/samples/CMakeFiles/methane-water-integration.dir/methane-water-integration.cpp.o -o bin/methane-water-integration -Wl,-rpath,/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/lib lib/libnblib_gmx.so.0.1.0 -lm /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -Wl,-rpath-link,/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/lib && : + popd ~/build/BUILD/gromacs-2026.3-build/gromacs-2026.3 + test -n '' + for mpi in '' mpich openmpi + test -n mpich + module load mpi/mpich-aarch64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw load mpi/mpich-aarch64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh load mpi/mpich-aarch64 + eval $'LD_LIBRARY_PATH=\'/usr/lib64/mpich/lib\'; export LD_LIBRARY_PATH;\nMPI_COMPILER=\'mpich-aarch64\'; export MPI_COMPILER;\nMANPATH=\'/usr/share/man/mpich-aarch64:/usr/share/man:\'; export MANPATH;\nMPI_INCLUDE=\'/usr/include/mpich-aarch64\'; export MPI_INCLUDE;\nMPI_MAN=\'/usr/share/man/mpich-aarch64\'; export MPI_MAN;\nMPI_PYTHON_SITEARCH=\'%{python2_sitearch}/mpich\'; export MPI_PYTHON_SITEARCH;\n_LMFILES_=\'/usr/share/modulefiles/mpi/mpich-aarch64\'; export _LMFILES_;\nLOADEDMODULES=\'mpi/mpich-aarch64\'; export LOADEDMODULES;\nCMAKE_PREFIX_PATH=\'/usr/lib64/mpich\'; export CMAKE_PREFIX_PATH;\nPKG_CONFIG_PATH=\'/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig\'; export PKG_CONFIG_PATH;\nMPI_PYTHON3_SITEARCH=\'/usr/lib64/python3.15/site-packages/mpich\'; export MPI_PYTHON3_SITEARCH;\nMPI_FORTRAN_MOD_DIR=\'/usr/lib64/gfortran/modules/mpich\'; export MPI_FORTRAN_MOD_DIR;\nMPI_HOME=\'/usr/lib64/mpich\'; export MPI_HOME;\n__MODULES_LMCONFLICT=\'mpi/mpich-aarch64&mpi\'; export __MODULES_LMCONFLICT;\n__MODULES_SHARE_MANPATH=\':2\'; export __MODULES_SHARE_MANPATH;\nMPI_SYSCONFIG=\'/etc/mpich-aarch64\'; export MPI_SYSCONFIG;\nMPI_SUFFIX=\'_mpich\'; export MPI_SUFFIX;\n__MODULES_SHARE_PKG_CONFIG_PATH=\':1\'; export __MODULES_SHARE_PKG_CONFIG_PATH;\nMPI_PYTHON2_SITEARCH=\'%{python2_sitearch}/mpich\'; export MPI_PYTHON2_SITEARCH;\nMPI_LIB=\'/usr/lib64/mpich/lib\'; export MPI_LIB;\nPATH=\'/usr/lib64/mpich/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin\'; export PATH;\nMPI_BIN=\'/usr/lib64/mpich/bin\'; export MPI_BIN;\ntest 0;' ++ LD_LIBRARY_PATH=/usr/lib64/mpich/lib ++ export LD_LIBRARY_PATH ++ MPI_COMPILER=mpich-aarch64 ++ export MPI_COMPILER ++ MANPATH=/usr/share/man/mpich-aarch64:/usr/share/man: ++ export MANPATH ++ MPI_INCLUDE=/usr/include/mpich-aarch64 ++ export MPI_INCLUDE ++ MPI_MAN=/usr/share/man/mpich-aarch64 ++ export MPI_MAN ++ MPI_PYTHON_SITEARCH='%{python2_sitearch}/mpich' ++ export MPI_PYTHON_SITEARCH ++ _LMFILES_=/usr/share/modulefiles/mpi/mpich-aarch64 ++ export _LMFILES_ ++ LOADEDMODULES=mpi/mpich-aarch64 ++ export LOADEDMODULES ++ CMAKE_PREFIX_PATH=/usr/lib64/mpich ++ export CMAKE_PREFIX_PATH ++ PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.15/site-packages/mpich ++ export MPI_PYTHON3_SITEARCH ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich ++ export MPI_FORTRAN_MOD_DIR ++ MPI_HOME=/usr/lib64/mpich ++ export MPI_HOME ++ __MODULES_LMCONFLICT='mpi/mpich-aarch64&mpi' ++ export __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:2 ++ export __MODULES_SHARE_MANPATH ++ MPI_SYSCONFIG=/etc/mpich-aarch64 ++ export MPI_SYSCONFIG ++ MPI_SUFFIX=_mpich ++ export MPI_SUFFIX ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ MPI_PYTHON2_SITEARCH='%{python2_sitearch}/mpich' ++ export MPI_PYTHON2_SITEARCH ++ MPI_LIB=/usr/lib64/mpich/lib ++ export MPI_LIB ++ PATH=/usr/lib64/mpich/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin ++ export PATH ++ MPI_BIN=/usr/lib64/mpich/bin ++ export MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + mkdir -p mpich + pushd mpich ~/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich ~/build/BUILD/gromacs-2026.3-build/gromacs-2026.3 + test -z mpich + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX ++ test -n mpich ++ echo -DGMX_MPI:BOOL=ON -DGMX_THREAD_MPI:BOOL=OFF -DGMX_DEFAULT_SUFFIX:BOOL=OFF -DBUILD_SHARED_LIBS:BOOL=OFF -DGMX_USE_HEFFTE=OFF -DGMX_BINARY_SUFFIX=_mpich -DGMX_LIBS_SUFFIX=_mpich -DCMAKE_INSTALL_BINDIR=/usr/lib64/mpich/bin -DCMAKE_INSTALL_LIBDIR=/usr/lib64/mpich/lib ++ test -z mpich ++ test -n '' ++ echo -DGMX_GPU=OpenCL + /usr/bin/cmake -S .. -B redhat-linux-build -G Ninja -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DCMAKE_INSTALL_FULL_SBINDIR:PATH=/usr/bin -DCMAKE_INSTALL_SBINDIR:PATH=bin -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -DBUILD_TESTING:BOOL=ON -DCMAKE_SKIP_INSTALL_RPATH=ON -DGMX_BLAS_USER=flexiblas -DGMX_BUILD_UNITTESTS:BOOL=ON -DGMX_USE_LMFIT=EXTERNAL -DGMX_EXTERNAL_TNG:BOOL=ON -DGMX_EXTERNAL_TINYXML2:BOOL=OFF -DGMX_USE_MUPARSER=EXTERNAL -DGMX_LAPACK_USER=flexiblas -DGMX_USE_RDTSCP=OFF -DGMX_INSTALL_LEGACY_API=ON -DGMX_VERSION_STRING_OF_FORK=Fedora46 -DGMX_SIMD=ARM_NEON_ASIMD -DGMX_MPI:BOOL=ON -DGMX_THREAD_MPI:BOOL=OFF -DGMX_DEFAULT_SUFFIX:BOOL=OFF -DBUILD_SHARED_LIBS:BOOL=OFF -DGMX_USE_HEFFTE=OFF -DGMX_BINARY_SUFFIX=_mpich -DGMX_LIBS_SUFFIX=_mpich -DCMAKE_INSTALL_BINDIR=/usr/lib64/mpich/bin -DCMAKE_INSTALL_LIBDIR=/usr/lib64/mpich/lib -DGMX_GPU=OpenCL -- The C compiler identification is GNU 16.2.1 -- The CXX compiler identification is GNU 16.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Could NOT find Python3 (missing: Python3_INCLUDE_DIRS Python3_LIBRARIES Development Development.Module Development.Embed) (found suitable version "3.15.0", minimum required is "3.9") -- Selected GPU FFT library - clFFT -- Found OpenMP_CXX: -fopenmp (found version "5.2") -- Found OpenMP: TRUE (found version "5.2") found components: CXX -- Performing Test CFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS -- Performing Test CFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS - Success -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS -- Performing Test CXXFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Looking for include file unistd.h -- Looking for include file unistd.h - found -- Looking for include file pwd.h -- Looking for include file pwd.h - found -- Looking for include file dirent.h -- Looking for include file dirent.h - found -- Looking for include file time.h -- Looking for include file time.h - found -- Looking for include file sys/time.h -- Looking for include file sys/time.h - found -- Looking for include file io.h -- Looking for include file io.h - not found -- Looking for include file sched.h -- Looking for include file sched.h - found -- Looking for include file xmmintrin.h -- Looking for include file xmmintrin.h - not found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for sysconf -- Looking for sysconf - found -- Looking for nice -- Looking for nice - found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sigaction -- Looking for sigaction - found -- Performing Test HAVE_BUILTIN_CLZ -- Performing Test HAVE_BUILTIN_CLZ - Success -- Performing Test HAVE_BUILTIN_CLZLL -- Performing Test HAVE_BUILTIN_CLZLL - Success -- Looking for clock_gettime in rt -- Looking for clock_gettime in rt - found -- Looking for feenableexcept in m -- Looking for feenableexcept in m - found -- Looking for fedisableexcept in m -- Looking for fedisableexcept in m - found -- Checking for sched.h GNU affinity API -- Performing Test sched_affinity_compile -- Performing Test sched_affinity_compile - Success -- Looking for include file mm_malloc.h -- Looking for include file mm_malloc.h - not found -- Looking for include file malloc.h -- Looking for include file malloc.h - found -- Checking for _mm_malloc() -- Checking for _mm_malloc() - not supported -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - not found -- Found MPI_CXX: /usr/lib64/mpich/lib/libmpicxx.so (found version "5.0") -- Found MPI: TRUE (found version "5.0") found components: CXX -- Performing Test HAS_WARNING_NO_OLD_STYLE_CAST -- Performing Test HAS_WARNING_NO_OLD_STYLE_CAST - Success -- Performing Test HAS_WARNING_NO_CAST_QUAL -- Performing Test HAS_WARNING_NO_CAST_QUAL - Success -- Performing Test HAS_WARNING_NO_SUGGEST_OVERRIDE -- Performing Test HAS_WARNING_NO_SUGGEST_OVERRIDE - Success -- Performing Test HAS_WARNING_NO_SUGGEST_DESTRUCTOR_OVERRIDE -- Performing Test HAS_WARNING_NO_SUGGEST_DESTRUCTOR_OVERRIDE - Success -- Performing Test HAS_WARNING_NO_ZERO_AS_NULL_POINTER_CONSTANT -- Performing Test HAS_WARNING_NO_ZERO_AS_NULL_POINTER_CONSTANT - Success -- Using manually set binary suffix: "_mpich" -- Using manually set library suffix: "_mpich" -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Looking for C++ include pthread.h -- Looking for C++ include pthread.h - found -- Performing Test TEST_ATOMICS -- Performing Test TEST_ATOMICS - Success -- Atomic operations found -- Performing Test PTHREAD_SETAFFINITY -- Performing Test PTHREAD_SETAFFINITY - Success -- Performing Test C_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS -- Performing Test C_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS - Success -- Performing Test CXX_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS -- Performing Test CXX_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS - Success -- Enabling ARM (AArch64) NEON Advanced SIMD instructions using CXX flags: -- Performing Test _callconv___vectorcall -- Performing Test _callconv___vectorcall - Failed -- Performing Test _callconv___regcall -- Performing Test _callconv___regcall - Failed -- Performing Test _callconv_ -- Performing Test _callconv_ - Success -- GPU support with OpenCL is deprecated. It is still fully supported (and recommended for Apple GPUs). Please use CUDA for running on NVIDIA GPUs and SYCL for running on Intel GPUs, and HIP or SYCL on AMD GPUs. -- Looking for include file OpenCL/cl.h -- Looking for include file OpenCL/cl.h - not found -- Looking for CL_VERSION_3_0 -- Looking for CL_VERSION_3_0 - found -- Found OpenCL: /usr/lib64/libOpenCL.so (found version "3.0") -- Torch not found. Neural network potential support will be disabled. -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - not supported -- Detected build CPU vendor - ARM -- Detected build CPU brand - 0xd40 -- Detected build CPU family - 8 -- Detected build CPU model - 1 -- Detected build CPU stepping - 1 -- Detected build CPU features - neon neon_asimd sve -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present -- Checking for fseeko/ftello -- Checking for fseeko/ftello - present -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for pipe support -- Checking for system XDR support -- Checking for system XDR support - not present -- Checking for module 'fftw3f' -- Found fftw3f, version 3.3.10 -- Looking for fftwf_plan_many_dft in /usr/lib64/libfftw3f.so -- Looking for fftwf_plan_many_dft in /usr/lib64/libfftw3f.so - found -- Looking for fftwf_plan_many_dft_r2c in /usr/lib64/libfftw3f.so -- Looking for fftwf_plan_many_dft_r2c in /usr/lib64/libfftw3f.so - found -- Looking for fftwf_plan_many_dft_c2r in /usr/lib64/libfftw3f.so -- Looking for fftwf_plan_many_dft_c2r in /usr/lib64/libfftw3f.so - found -- Looking for fftwf_have_simd_sse in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_sse in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_sse in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_sse in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_sse2 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_sse2 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_sse2 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_sse2 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx2 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx2 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx2_128 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx2_128 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx512 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx512 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx_128_fma in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx_128_fma in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx_512 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx_512 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_kcvi in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_kcvi in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_altivec in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_altivec in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_neon in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_neon in /usr/lib64/libfftw3f.so - found -- Using external FFT library - FFTW3 -- Checking that user BLAS library flexiblas works -- Looking for dgemm_ -- Looking for dgemm_ - found -- Checking that user LAPACK library flexiblas works -- Looking for cheev_ -- Looking for cheev_ - found -- No image conversion possible without ImageMagick -- Performing Test HAVE_NO_DEPRECATED_COPY -- Performing Test HAVE_NO_DEPRECATED_COPY - Success -- Looking for open_memstream -- Looking for open_memstream - found -- Performing Test HAS_WARNING_EVERYTHING -- Performing Test HAS_WARNING_EVERYTHING - Failed -- Looking for dlopen -- Looking for dlopen - found -- Performing Test HAS_NO_STRINGOP_TRUNCATION -- Performing Test HAS_NO_STRINGOP_TRUNCATION - Success -- Could NOT find HDF5 (missing: HDF5_LIBRARIES HDF5_INCLUDE_DIRS C) (Required is at least version "1.10.7") -- Performing Test HAS_WARNING_NO_CAST_FUNCTION_TYPE_STRICT -- Performing Test HAS_WARNING_NO_CAST_FUNCTION_TYPE_STRICT - Success -- Performing Test HAS_NO_UNUSED -- Performing Test HAS_NO_UNUSED - Success -- Performing Test HAS_NO_UNUSED_PARAMETER -- Performing Test HAS_NO_UNUSED_PARAMETER - Success -- Performing Test HAS_NO_MISSING_DECLARATIONS -- Performing Test HAS_NO_MISSING_DECLARATIONS - Success -- Performing Test HAS_NO_NULL_CONVERSIONS -- Performing Test HAS_NO_NULL_CONVERSIONS - Success -- Could NOT find clFFT (missing: clFFT_INCLUDE_DIR clFFT_LIBRARY) -- Performing Test LMFIT_LINKS_OK -- Performing Test LMFIT_LINKS_OK - Success -- Found Lmfit: /usr/include (found suitable version "11.0.0", minimum required is "7.0") -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success -- Performing Test COMPILER_HAS_DEPRECATED_ATTR -- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success -- Could NOT find Sphinx (missing: SPHINX_EXECUTABLE pygments) (Required is at least version "4.0.0") -- Could NOT find LATEX (missing: LATEX_COMPILER) -- Configuring done (20.3s) -- Generating done (0.6s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_Fortran_FLAGS_RELEASE CMAKE_INSTALL_DO_STRIP CMAKE_VERBOSE_MAKEFILE INCLUDE_INSTALL_DIR LIB_INSTALL_DIR LIB_SUFFIX SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build + /usr/bin/cmake --build redhat-linux-build -j32 --verbose Change Dir: '/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build' Run Build Command(s): /usr/bin/ninja-build -v -j 32 [1/978] cd /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3.15 -D PROJECT_VERSION=2026.3-Fedora46 -D PROJECT_SOURCE_DIR=/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3 -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Fedora46 -P /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/cmake/gmxGenerateVersionInfoWithoutGit.cmake [2/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o -MF src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o.d -o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/src/atomic.cpp [3/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -MD -MT src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr_float.cpp.o -MF src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr_float.cpp.o.d -o src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr_float.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/rpc_xdr/xdr_float.cpp /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/rpc_xdr/xdr_float.cpp: In function ‘bool_t xdr_double(XDR*, double*)’: /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/rpc_xdr/xdr_float.cpp:223:17: warning: unused variable ‘ip’ [-Wunused-variable] 223 | int* ip; | ^~ /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/rpc_xdr/xdr_float.cpp:224:17: warning: unused variable ‘tmp’ [-Wunused-variable] 224 | int32_t tmp[2]; | ^~~ [4/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -MD -MT src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr_array.cpp.o -MF src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr_array.cpp.o.d -o src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr_array.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/rpc_xdr/xdr_array.cpp [5/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -MF src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o.d -o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/src/tmpi_malloc.cpp [6/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o -MF src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o.d -o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/src/lock.cpp [7/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -MD -MT src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr_stdio.cpp.o -MF src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr_stdio.cpp.o.d -o src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr_stdio.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/rpc_xdr/xdr_stdio.cpp [8/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o -MF src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o.d -o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/src/errhandler.cpp [9/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -MD -MT src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr.cpp.o -MF src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr.cpp.o.d -o src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/rpc_xdr/xdr.cpp [10/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o -MF src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o.d -o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/src/pthreads.cpp [11/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_torchann.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_torchann.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_torchann.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarcomp_torchann.cpp [12/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_volmaps.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_volmaps.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_volmaps.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarcomp_volmaps.cpp [13/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_alchlambda.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_alchlambda.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_alchlambda.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarcomp_alchlambda.cpp [14/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparams.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparams.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparams.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarparams.cpp [15/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abmd.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abmd.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abmd.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarbias_abmd.cpp [16/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_angles.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_angles.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_angles.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarcomp_angles.cpp [17/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_replicas.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_replicas.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_replicas.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarproxy_replicas.cpp [18/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_volmaps.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_volmaps.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_volmaps.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarproxy_volmaps.cpp [19/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_combination.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_combination.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_combination.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarcomp_combination.cpp [20/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_system.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_system.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_system.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarproxy_system.cpp [21/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_rotations.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_rotations.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_rotations.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarcomp_rotations.cpp [22/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_alb.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_alb.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_alb.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarbias_alb.cpp [23/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_tcl.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_tcl.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_tcl.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarproxy_tcl.cpp [24/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar_neuralnetworkcompute.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar_neuralnetworkcompute.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar_neuralnetworkcompute.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvar_neuralnetworkcompute.cpp [25/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvars_memstream.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvars_memstream.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvars_memstream.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvars_memstream.cpp [26/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarbias_histogram.cpp [27/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvardeps.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvardeps.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvardeps.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvardeps.cpp [28/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid_integrate.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid_integrate.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid_integrate.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvargrid_integrate.cpp [29/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_neuralnetwork.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_neuralnetwork.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_neuralnetwork.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarcomp_neuralnetwork.cpp [30/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_protein.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_protein.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_protein.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarcomp_protein.cpp [31/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/nr_jacobi.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/nr_jacobi.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/nr_jacobi.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/nr_jacobi.cpp [32/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_coordnums.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_coordnums.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_coordnums.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarcomp_coordnums.cpp [33/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram_reweight_amd.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram_reweight_amd.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram_reweight_amd.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarbias_histogram_reweight_amd.cpp [34/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -DGMX_DESCRIBE_BLAS="External - user-supplied" -DGMX_DESCRIBE_LAPACK="External - user-supplied" -DGMX_FFT_MKL=0 -MD -MT src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/binary_information.cpp.o -MF src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/binary_information.cpp.o.d -o src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/binary_information.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/binary_information.cpp [35/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o -MF src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o.d -o src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/sparsematrix.cpp [36/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_io.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_io.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_io.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarproxy_io.cpp [37/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarproxy.cpp [38/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/fmm/CMakeFiles/fmm.dir/fmmforceprovider_stub.cpp.o -MF src/gromacs/fmm/CMakeFiles/fmm.dir/fmmforceprovider_stub.cpp.o.d -o src/gromacs/fmm/CMakeFiles/fmm.dir/fmmforceprovider_stub.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fmm/fmmforceprovider_stub.cpp [39/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/eigensolver.cpp.o -MF src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/eigensolver.cpp.o.d -o src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/eigensolver.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/eigensolver.cpp [40/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_bias.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_bias.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_bias.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarscript_commands_bias.cpp [41/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/matrix.cpp.o -MF src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/matrix.cpp.o.d -o src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/matrix.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/matrix.cpp [42/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarcomp.cpp [43/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/options/CMakeFiles/options.dir/behaviorcollection.cpp.o -MF src/gromacs/options/CMakeFiles/options.dir/behaviorcollection.cpp.o.d -o src/gromacs/options/CMakeFiles/options.dir/behaviorcollection.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/options/behaviorcollection.cpp [44/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/options/CMakeFiles/options.dir/abstractsection.cpp.o -MF src/gromacs/options/CMakeFiles/options.dir/abstractsection.cpp.o.d -o src/gromacs/options/CMakeFiles/options.dir/abstractsection.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/options/abstractsection.cpp [45/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/fmm/CMakeFiles/fmm.dir/fmm_mdpvalidator.cpp.o -MF src/gromacs/fmm/CMakeFiles/fmm.dir/fmm_mdpvalidator.cpp.o.d -o src/gromacs/fmm/CMakeFiles/fmm.dir/fmm_mdpvalidator.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fmm/fmm_mdpvalidator.cpp [46/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarscript_commands.cpp [47/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/fmm/CMakeFiles/fmm.dir/fmmforceproviderbuilder.cpp.o -MF src/gromacs/fmm/CMakeFiles/fmm.dir/fmmforceproviderbuilder.cpp.o.d -o src/gromacs/fmm/CMakeFiles/fmm.dir/fmmforceproviderbuilder.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fmm/fmmforceproviderbuilder.cpp [48/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_colvar.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_colvar.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_colvar.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarscript_commands_colvar.cpp [49/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/options/CMakeFiles/options.dir/optionsection.cpp.o -MF src/gromacs/options/CMakeFiles/options.dir/optionsection.cpp.o.d -o src/gromacs/options/CMakeFiles/options.dir/optionsection.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/options/optionsection.cpp [50/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_apath.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_apath.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_apath.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarcomp_apath.cpp [51/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/options/CMakeFiles/options.dir/optionsvisitor.cpp.o -MF src/gromacs/options/CMakeFiles/options.dir/optionsvisitor.cpp.o.d -o src/gromacs/options/CMakeFiles/options.dir/optionsvisitor.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/options/optionsvisitor.cpp [52/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/fmm/CMakeFiles/fmm.dir/fmm_mdmodule.cpp.o -MF src/gromacs/fmm/CMakeFiles/fmm.dir/fmm_mdmodule.cpp.o.d -o src/gromacs/fmm/CMakeFiles/fmm.dir/fmm_mdmodule.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fmm/fmm_mdmodule.cpp [53/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/fmm/CMakeFiles/fmm.dir/fmm_mdpoptions.cpp.o -MF src/gromacs/fmm/CMakeFiles/fmm.dir/fmm_mdpoptions.cpp.o.d -o src/gromacs/fmm/CMakeFiles/fmm.dir/fmm_mdpoptions.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fmm/fmm_mdpoptions.cpp [54/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_distances.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_distances.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_distances.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarcomp_distances.cpp [55/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_restraint.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_restraint.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_restraint.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarbias_restraint.cpp [56/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarbias.cpp [57/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/options/CMakeFiles/options.dir/optionsassigner.cpp.o -MF src/gromacs/options/CMakeFiles/options.dir/optionsassigner.cpp.o.d -o src/gromacs/options/CMakeFiles/options.dir/optionsassigner.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/options/optionsassigner.cpp [58/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvaratoms.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvaratoms.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvaratoms.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvaratoms.cpp [59/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/options/CMakeFiles/options.dir/filenameoptionmanager.cpp.o -MF src/gromacs/options/CMakeFiles/options.dir/filenameoptionmanager.cpp.o.d -o src/gromacs/options/CMakeFiles/options.dir/filenameoptionmanager.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/options/filenameoptionmanager.cpp [60/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/options/CMakeFiles/options.dir/timeunitmanager.cpp.o -MF src/gromacs/options/CMakeFiles/options.dir/timeunitmanager.cpp.o.d -o src/gromacs/options/CMakeFiles/options.dir/timeunitmanager.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/options/timeunitmanager.cpp [61/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvartypes.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvartypes.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvartypes.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvartypes.cpp [62/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarvalue.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarvalue.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarvalue.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarvalue.cpp [63/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/reportgpuusage.cpp.o -MF src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/reportgpuusage.cpp.o.d -o src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/reportgpuusage.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/reportgpuusage.cpp [64/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/options/CMakeFiles/options.dir/options.cpp.o -MF src/gromacs/options/CMakeFiles/options.dir/options.cpp.o.d -o src/gromacs/options/CMakeFiles/options.dir/options.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/options/options.cpp [65/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/findallgputasks.cpp.o -MF src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/findallgputasks.cpp.o.d -o src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/findallgputasks.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/findallgputasks.cpp [66/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o -MF src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o.d -o src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/gmx_arpack.cpp [67/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/decidesimulationworkload.cpp.o -MF src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/decidesimulationworkload.cpp.o.d -o src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/decidesimulationworkload.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/decidesimulationworkload.cpp [68/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/options/CMakeFiles/options.dir/abstractoption.cpp.o -MF src/gromacs/options/CMakeFiles/options.dir/abstractoption.cpp.o.d -o src/gromacs/options/CMakeFiles/options.dir/abstractoption.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/options/abstractoption.cpp [69/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/fmm/CMakeFiles/fmm.dir/fmmoptions.cpp.o -MF src/gromacs/fmm/CMakeFiles/fmm.dir/fmmoptions.cpp.o.d -o src/gromacs/fmm/CMakeFiles/fmm.dir/fmmoptions.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fmm/fmmoptions.cpp [70/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvargrid.cpp [71/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_gpath.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_gpath.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_gpath.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarcomp_gpath.cpp [72/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/usergpuids.cpp.o -MF src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/usergpuids.cpp.o.d -o src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/usergpuids.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/usergpuids.cpp [73/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/pullcoordexpressionparser.cpp.o -MF src/gromacs/pulling/CMakeFiles/pulling.dir/pullcoordexpressionparser.cpp.o.d -o src/gromacs/pulling/CMakeFiles/pulling.dir/pullcoordexpressionparser.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/pullcoordexpressionparser.cpp [74/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/compositesimulatorelement.cpp [75/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/transformationcoordinate.cpp.o -MF src/gromacs/pulling/CMakeFiles/pulling.dir/transformationcoordinate.cpp.o.d -o src/gromacs/pulling/CMakeFiles/pulling.dir/transformationcoordinate.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/transformationcoordinate.cpp [76/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparse.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparse.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparse.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarparse.cpp [77/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/resourcedivision.cpp.o -MF src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/resourcedivision.cpp.o.d -o src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/resourcedivision.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/resourcedivision.cpp [78/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/decidegpuusage.cpp.o -MF src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/decidegpuusage.cpp.o.d -o src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/decidegpuusage.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/decidegpuusage.cpp [79/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/options/CMakeFiles/options.dir/filenameoption.cpp.o -MF src/gromacs/options/CMakeFiles/options.dir/filenameoption.cpp.o.d -o src/gromacs/options/CMakeFiles/options.dir/filenameoption.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/options/filenameoption.cpp [80/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarscript.cpp [81/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/taskassignment.cpp.o -MF src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/taskassignment.cpp.o.d -o src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/taskassignment.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/taskassignment.cpp [82/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/options/CMakeFiles/options.dir/treesupport.cpp.o -MF src/gromacs/options/CMakeFiles/options.dir/treesupport.cpp.o.d -o src/gromacs/options/CMakeFiles/options.dir/treesupport.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/options/treesupport.cpp [83/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/output.cpp.o -MF src/gromacs/pulling/CMakeFiles/pulling.dir/output.cpp.o.d -o src/gromacs/pulling/CMakeFiles/pulling.dir/output.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/output.cpp [84/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/domdechelper.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/domdechelper.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/domdechelper.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/domdechelper.cpp [85/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/checkpointhelper.cpp [86/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abf.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abf.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abf.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarbias_abf.cpp [87/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/pullutil.cpp.o -MF src/gromacs/pulling/CMakeFiles/pulling.dir/pullutil.cpp.o.d -o src/gromacs/pulling/CMakeFiles/pulling.dir/pullutil.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/pullutil.cpp [88/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/referencetemperaturemanager.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/referencetemperaturemanager.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/referencetemperaturemanager.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/referencetemperaturemanager.cpp [89/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_meta.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_meta.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_meta.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarbias_meta.cpp [90/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/pmeloadbalancehelper.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/pmeloadbalancehelper.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/pmeloadbalancehelper.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/pmeloadbalancehelper.cpp [91/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_opes.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_opes.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_opes.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarbias_opes.cpp [92/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/topologyholder.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/topologyholder.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/topologyholder.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/topologyholder.cpp [93/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/andersentemperaturecoupling.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/andersentemperaturecoupling.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/andersentemperaturecoupling.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/andersentemperaturecoupling.cpp [94/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/signallers.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/signallers.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/signallers.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/signallers.cpp [95/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -Wno-null-conversion -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/selection/CMakeFiles/scanner.dir/scanner.cpp.o -MF src/gromacs/selection/CMakeFiles/scanner.dir/scanner.cpp.o.d -o src/gromacs/selection/CMakeFiles/scanner.dir/scanner.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/scanner.cpp [96/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/constraintelement.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/constraintelement.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/constraintelement.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/constraintelement.cpp [97/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/energyterm.cpp.o -MF src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/energyterm.cpp.o.d -o src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/energyterm.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/energyanalysis/energyterm.cpp [98/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/fileio/h5md/CMakeFiles/h5md.dir/h5md.cpp.o -MF src/gromacs/fileio/h5md/CMakeFiles/h5md.dir/h5md.cpp.o.d -o src/gromacs/fileio/h5md/CMakeFiles/h5md.dir/h5md.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/h5md/h5md.cpp [99/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/trajectoryelement.cpp [100/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/expandedensembleelement.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/expandedensembleelement.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/expandedensembleelement.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/expandedensembleelement.cpp [101/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/statTimer -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/md5sum.cpp.o -MF src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/md5sum.cpp.o.d -o src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/md5sum.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/library/md5sum.cpp [102/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/forceelement.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/forceelement.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/forceelement.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/forceelement.cpp [103/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/computeglobalselement.cpp [104/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/freeenergyperturbationdata.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/freeenergyperturbationdata.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/freeenergyperturbationdata.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/freeenergyperturbationdata.cpp [105/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarmodule.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarmodule.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarmodule.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarmodule.cpp [106/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/firstorderpressurecoupling.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/firstorderpressurecoupling.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/firstorderpressurecoupling.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/firstorderpressurecoupling.cpp [107/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/statTimer -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/action.transpose.cpp.o -MF src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/action.transpose.cpp.o.d -o src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/action.transpose.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/library/action.transpose.cpp [108/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/statTimer -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/stdafx.cpp.o -MF src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/stdafx.cpp.o.d -o src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/stdafx.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/statTimer/stdafx.cpp [109/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/energydata.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/energydata.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/energydata.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/energydata.cpp [110/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/statTimer -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/fft_binary_lookup.cpp.o -MF src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/fft_binary_lookup.cpp.o.d -o src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/fft_binary_lookup.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/library/fft_binary_lookup.cpp [111/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/statTimer -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/enqueue.cpp.o -MF src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/enqueue.cpp.o.d -o src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/enqueue.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/library/enqueue.cpp [112/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/pull.cpp.o -MF src/gromacs/pulling/CMakeFiles/pulling.dir/pull.cpp.o.d -o src/gromacs/pulling/CMakeFiles/pulling.dir/pull.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/pull.cpp [113/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/statTimer -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/stdafx.cpp.o -MF src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/stdafx.cpp.o.d -o src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/stdafx.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/library/stdafx.cpp [114/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/pull_rotation.cpp.o -MF src/gromacs/pulling/CMakeFiles/pulling.dir/pull_rotation.cpp.o.d -o src/gromacs/pulling/CMakeFiles/pulling.dir/pull_rotation.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/pull_rotation.cpp [115/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/pullelement.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/pullelement.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/pullelement.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/pullelement.cpp [116/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/statTimer -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/lifetime.cpp.o -MF src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/lifetime.cpp.o.d -o src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/lifetime.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/library/lifetime.cpp [117/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvar.cpp [118/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/statTimer -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/accessors.cpp.o -MF src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/accessors.cpp.o.d -o src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/accessors.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/library/accessors.cpp [119/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/statTimer -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.extern.cpp.o -MF src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.extern.cpp.o.d -o src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.extern.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/statTimer/statisticalTimer.extern.cpp [120/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/parrinellorahmanbarostat.cpp [121/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/programs/CMakeFiles/gmx_objlib.dir/gmx.cpp.o -MF src/programs/CMakeFiles/gmx_objlib.dir/gmx.cpp.o.d -o src/programs/CMakeFiles/gmx_objlib.dir/gmx.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/programs/gmx.cpp [122/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/statTimer -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.CPU.cpp.o -MF src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.CPU.cpp.o.d -o src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.CPU.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/statTimer/statisticalTimer.CPU.cpp [123/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/statTimer -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/transform.cpp.o -MF src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/transform.cpp.o.d -o src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/transform.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/library/transform.cpp [124/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/programs/CMakeFiles/gmx_objlib.dir/legacymodules.cpp.o -MF src/programs/CMakeFiles/gmx_objlib.dir/legacymodules.cpp.o.d -o src/programs/CMakeFiles/gmx_objlib.dir/legacymodules.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/programs/legacymodules.cpp [125/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/mttk.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/mttk.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/mttk.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/mttk.cpp [126/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -MF src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o.d -o src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/programs/mdrun/mdrun.cpp [127/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -MF src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o.d -o src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/programs/mdrun/nonbonded_bench.cpp [128/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/nosehooverchains.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/nosehooverchains.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/nosehooverchains.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/nosehooverchains.cpp [129/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/statTimer -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/repo.cpp.o -MF src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/repo.cpp.o.d -o src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/repo.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/library/repo.cpp [130/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/statTimer -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.copy.cpp.o -MF src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.copy.cpp.o.d -o src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.copy.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/library/generator.copy.cpp [131/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/modularsimulator.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/modularsimulator.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/modularsimulator.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/modularsimulator.cpp [132/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -Wno-null-conversion -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/selection/CMakeFiles/scanner.dir/parser.cpp.o -MF src/gromacs/selection/CMakeFiles/scanner.dir/parser.cpp.o.d -o src/gromacs/selection/CMakeFiles/scanner.dir/parser.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/parser.cpp [133/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/velocityscalingtemperaturecoupling.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/velocityscalingtemperaturecoupling.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/velocityscalingtemperaturecoupling.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/velocityscalingtemperaturecoupling.cpp [134/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/statepropagatordata.cpp [135/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/statTimer -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.GPU.cpp.o -MF src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.GPU.cpp.o.d -o src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.GPU.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/statTimer/statisticalTimer.GPU.cpp [136/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/statTimer -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.transpose.gcn.cpp.o -MF src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.transpose.gcn.cpp.o.d -o src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.transpose.gcn.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/library/generator.transpose.gcn.cpp [137/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/statTimer -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/plan.cpp.o -MF src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/plan.cpp.o.d -o src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/plan.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/library/plan.cpp [138/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/options/CMakeFiles/options.dir/basicoptions.cpp.o -MF src/gromacs/options/CMakeFiles/options.dir/basicoptions.cpp.o.d -o src/gromacs/options/CMakeFiles/options.dir/basicoptions.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/options/basicoptions.cpp [139/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/simulatoralgorithm.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/simulatoralgorithm.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/simulatoralgorithm.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/simulatoralgorithm.cpp [140/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/propagator.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/propagator.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/propagator.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/propagator.cpp [141/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/statTimer -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.transpose.cpp.o -MF src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.transpose.cpp.o.d -o src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.transpose.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/library/generator.transpose.cpp [142/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/statTimer -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.stockham.cpp.o -MF src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.stockham.cpp.o.d -o src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.stockham.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/library/generator.stockham.cpp [143/978] cd /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/cmake -D VERSION_VARIABLES=/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/VersionInfo.cmake -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/baseversion-gen.cpp.cmakein -D VERSION_OUT=utility/baseversion-gen.cpp -D GMX_SOURCE_DOI= -D GMX_RELEASE_HASH= -D GMX_SOURCE_HASH= -P /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/cmake/gmxConfigureVersionInfo.cmake && /usr/bin/cmake -E touch utility/baseversion-gen.cpp [144/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/errorcodes.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/errorcodes.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/errorcodes.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/errorcodes.cpp [145/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/alignedallocator.cpp [146/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/physicalnodecommunicator.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/physicalnodecommunicator.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/physicalnodecommunicator.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/physicalnodecommunicator.cpp [147/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/booltype.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/booltype.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/booltype.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/booltype.cpp [148/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/logger.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/logger.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/logger.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/logger.cpp [149/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/any.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/any.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/any.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/any.cpp [150/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/compare.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/compare.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/compare.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/compare.cpp [151/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/int64_to_int.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/int64_to_int.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/int64_to_int.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/int64_to_int.cpp [152/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxassert.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxassert.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxassert.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/gmxassert.cpp [153/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/baseversion.cpp [154/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/ikeyvaluetreeerror.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/ikeyvaluetreeerror.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/ikeyvaluetreeerror.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/ikeyvaluetreeerror.cpp [155/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/basenetwork.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/basenetwork.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/basenetwork.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/basenetwork.cpp [156/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/init.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/init.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/init.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/init.cpp [157/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/pleasecite.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/pleasecite.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/pleasecite.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/pleasecite.cpp [158/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/fileredirector.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/fileredirector.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/fileredirector.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/fileredirector.cpp [159/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/errorformat.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/errorformat.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/errorformat.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/errorformat.cpp [160/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/message_string_collector.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/message_string_collector.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/message_string_collector.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/message_string_collector.cpp [161/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/niceheader.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/niceheader.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/niceheader.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/niceheader.cpp [162/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxomp.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxomp.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxomp.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/gmxomp.cpp [163/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/coolstuff.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/coolstuff.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/coolstuff.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/coolstuff.cpp [164/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/cstringutil.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/cstringutil.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/cstringutil.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/cstringutil.cpp [165/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/sysinfo.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/sysinfo.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/sysinfo.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/sysinfo.cpp [166/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/fatalerror.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/fatalerror.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/fatalerror.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/fatalerror.cpp [167/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/programcontext.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/programcontext.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/programcontext.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/programcontext.cpp [168/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreemdpwriter.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreemdpwriter.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreemdpwriter.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/keyvaluetreemdpwriter.cpp [169/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/smalloc.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/smalloc.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/smalloc.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/smalloc.cpp [170/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/stringstream.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/stringstream.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/stringstream.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/stringstream.cpp [171/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/veccompare.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/veccompare.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/veccompare.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/veccompare.cpp [172/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/filestream.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/filestream.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/filestream.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/filestream.cpp [173/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/mpicomm.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/mpicomm.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/mpicomm.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/mpicomm.cpp [174/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/loggerbuilder.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/loggerbuilder.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/loggerbuilder.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/loggerbuilder.cpp [175/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/strconvert.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/strconvert.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/strconvert.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/strconvert.cpp [176/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/strdb.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/strdb.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/strdb.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/strdb.cpp [177/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/path.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/path.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/path.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/path.cpp [178/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/txtdump.cpp [179/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/textreader.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/textreader.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/textreader.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/textreader.cpp [180/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/vecdump.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/vecdump.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/vecdump.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/vecdump.cpp [181/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetree.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetree.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetree.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/keyvaluetree.cpp [182/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/futil.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/futil.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/futil.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/futil.cpp [183/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/textwriter.cpp [184/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/directoryenumerator.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/directoryenumerator.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/directoryenumerator.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/directoryenumerator.cpp [185/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/stringutil.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/stringutil.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/stringutil.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/stringutil.cpp [186/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/datafilefinder.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/datafilefinder.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/datafilefinder.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/datafilefinder.cpp [187/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/exceptions.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/exceptions.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/exceptions.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/exceptions.cpp [188/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp [189/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp [190/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreetransform.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreetransform.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreetransform.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/keyvaluetreetransform.cpp [191/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp [192/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_F.cpp [193/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp [194/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_F.cpp [195/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp [196/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp [197/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp [198/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp [199/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp [200/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp [201/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp [202/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp [203/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VF.cpp [204/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp [205/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp [206/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp [207/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp [208/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp [209/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VF.cpp [210/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp [211/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp [212/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp [213/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp [214/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp [215/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp [216/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp [217/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp [218/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp [219/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp [220/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_F.cpp [221/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/mpiinfo.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/mpiinfo.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/mpiinfo.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/mpiinfo.cpp [222/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp [223/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp [224/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp [225/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp [226/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp [227/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp [228/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VgrpF.cpp [229/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp [230/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp [231/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp [232/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp [233/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp [234/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp [235/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp [236/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp [237/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp [238/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp [239/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp [240/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp [241/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp [242/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp [243/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp [244/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp [245/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp [246/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp [247/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp [248/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp [249/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp [250/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp [251/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp [252/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp [253/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp [254/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp [255/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp [256/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp [257/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp [258/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VF.cpp [259/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp [260/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp [261/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VF.cpp [262/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp [263/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp [264/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp [265/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp [266/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp [267/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VF.cpp [268/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp [269/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp [270/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp [271/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp [272/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp [273/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp [274/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp [275/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp [276/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp [277/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp [278/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp [279/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp [280/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp [281/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp [282/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp [283/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp [284/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp [285/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp [286/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_F.cpp [287/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp [288/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp [289/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp [290/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_F.cpp [291/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VF.cpp [292/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_F.cpp [293/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp [294/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp [295/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VF.cpp [296/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp [297/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp [298/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp [299/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp [300/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp [301/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VF.cpp [302/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_F.cpp [303/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp [304/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_F.cpp [305/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp [306/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VF.cpp [307/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp [308/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp [309/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VF.cpp [310/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_F.cpp [311/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VgrpF.cpp [312/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp [313/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp [314/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp [315/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp [316/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp [317/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp [318/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp [319/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp [320/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp [321/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp [322/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp [323/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp [324/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp [325/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp [326/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp [327/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp [328/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp [329/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp [330/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp [331/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp [332/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp [333/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp [334/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp [335/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp [336/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp [337/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp [338/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp [339/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_F.cpp [340/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp [341/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp [342/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp [343/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_F.cpp [344/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VF.cpp [345/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp [346/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_F.cpp [347/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp [348/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VF.cpp [349/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_F.cpp [350/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VF.cpp [351/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VF.cpp [352/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp [353/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_F.cpp [354/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_F.cpp [355/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp [356/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VF.cpp [357/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp [358/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp [359/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp [360/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp [361/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_F.cpp [362/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_F.cpp [363/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VF.cpp [364/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp [365/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VF.cpp [366/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp [367/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_F.cpp [368/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VF.cpp [369/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VgrpF.cpp [370/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernel_common.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernel_common.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernel_common.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernel_common.cpp [371/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/exclusionchecker.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/exclusionchecker.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/exclusionchecker.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/exclusionchecker.cpp [372/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistsets.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistsets.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistsets.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/pairlistsets.cpp [373/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_geometry.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_geometry.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_geometry.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/nbnxm_geometry.cpp [374/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_gpu_buffer_ops_internal_ocl.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_gpu_buffer_ops_internal_ocl.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_gpu_buffer_ops_internal_ocl.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/opencl/nbnxm_gpu_buffer_ops_internal_ocl.cpp [375/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/commandline/cmdlinehelpcontext.cpp [376/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_gpu_ref.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_gpu_ref.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_gpu_ref.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_reference/kernel_gpu_ref.cpp [377/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistparams.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistparams.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistparams.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/pairlistparams.cpp [378/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/freeenergydispatch.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/freeenergydispatch.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/freeenergydispatch.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/freeenergydispatch.cpp [379/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_system.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_system.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_system.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/benchmark/bench_system.cpp [380/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistwork.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistwork.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistwork.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/pairlistwork.cpp [381/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/gridset.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/gridset.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/gridset.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/gridset.cpp [382/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodulesettings.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodulesettings.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodulesettings.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/commandline/cmdlinemodulesettings.cpp [383/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_prune.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_prune.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_prune.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_reference/kernel_ref_prune.cpp [384/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/nbnxm.cpp [385/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist_simd_kernel.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist_simd_kernel.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist_simd_kernel.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/pairlist_simd_kernel.cpp [386/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairsearch.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairsearch.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairsearch.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/pairsearch.cpp [387/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodule.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodule.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodule.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/commandline/cmdlinemodule.cpp [388/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/simd_energy_accumulator.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/simd_energy_accumulator.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/simd_energy_accumulator.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/simd_energy_accumulator.cpp [389/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistset.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistset.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistset.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/pairlistset.cpp [390/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/simd_prune_kernel.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/simd_prune_kernel.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/simd_prune_kernel.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/simd_prune_kernel.cpp [391/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/prunekerneldispatch.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/prunekerneldispatch.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/prunekerneldispatch.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/prunekerneldispatch.cpp [392/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl_jit_support.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl_jit_support.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl_jit_support.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/opencl/nbnxm_ocl_jit_support.cpp [393/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl_data_mgmt.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl_data_mgmt.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl_data_mgmt.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/opencl/nbnxm_ocl_data_mgmt.cpp [394/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineinit.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineinit.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineinit.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/commandline/cmdlineinit.cpp [395/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kerneldispatch.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kerneldispatch.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kerneldispatch.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kerneldispatch.cpp [396/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineoptionsmodule.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineoptionsmodule.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineoptionsmodule.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/commandline/cmdlineoptionsmodule.cpp [397/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/viewit.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/commandline/viewit.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/commandline/viewit.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/commandline/viewit.cpp [398/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/commandline/cmdlineparser.cpp [399/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/filenm.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/commandline/filenm.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/commandline/filenm.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/commandline/filenm.cpp [400/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_setup.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_setup.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_setup.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/benchmark/bench_setup.cpp [401/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/atomdistribution.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/atomdistribution.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/atomdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/atomdistribution.cpp [402/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist_tuning.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist_tuning.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist_tuning.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/pairlist_tuning.cpp [403/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/opencl/nbnxm_ocl.cpp [404/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpwriter.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpwriter.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpwriter.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/commandline/cmdlinehelpwriter.cpp [405/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlb.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlb.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlb.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/dlb.cpp [406/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/dlbtiming.cpp [407/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/grid.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/grid.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/grid.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/grid.cpp [408/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/shellcompletions.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/commandline/shellcompletions.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/commandline/shellcompletions.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/commandline/shellcompletions.cpp [409/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/commandline/cmdlineprogramcontext.cpp [410/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/box.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/box.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/box.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/box.cpp [411/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/domdec_network.cpp [412/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomset.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomset.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomset.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/localatomset.cpp [413/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_setup.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_setup.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_setup.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/nbnxm_setup.cpp [414/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/ga2la.cpp [415/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/computemultibodycutoffs.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/computemultibodycutoffs.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/computemultibodycutoffs.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/computemultibodycutoffs.cpp [416/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodulemanager.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodulemanager.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodulemanager.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/commandline/cmdlinemodulemanager.cpp [417/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/collect.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/collect.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/collect.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/collect.cpp [418/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetdata.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetdata.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetdata.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/localatomsetdata.cpp [419/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetmanager.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetmanager.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetmanager.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/localatomsetmanager.cpp [420/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/domdec_vsite.cpp [421/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/pargs.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/commandline/pargs.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/commandline/pargs.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/commandline/pargs.cpp [422/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/commandline/cmdlinehelpmodule.cpp [423/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/cellsizes.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/cellsizes.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/cellsizes.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/cellsizes.cpp [424/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_zones.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_zones.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_zones.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/domdec_zones.cpp [425/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/gpuhaloexchange_impl.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/gpuhaloexchange_impl.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/gpuhaloexchange_impl.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/gpuhaloexchange_impl.cpp [426/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/nsgrid.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/nsgrid.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/nsgrid.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/nsgrid.cpp [427/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/atomdata.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/atomdata.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/atomdata.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/atomdata.cpp [428/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/functions.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/math/functions.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/math/functions.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/functions.cpp [429/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/3dtransforms.cpp [430/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/domainpaircomm.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/domainpaircomm.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/domainpaircomm.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/domainpaircomm.cpp [431/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/dump.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/dump.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/dump.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/dump.cpp [432/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/coordinatetransformation.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/math/coordinatetransformation.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/math/coordinatetransformation.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/coordinatetransformation.cpp [433/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/domdec_specatomcomm.cpp [434/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/utilities.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/math/utilities.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/math/utilities.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/utilities.cpp [435/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/mdsetup.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/mdsetup.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/mdsetup.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/mdsetup.cpp [436/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/distribute.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/distribute.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/distribute.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/distribute.cpp [437/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/densityfittingforce.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/math/densityfittingforce.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/math/densityfittingforce.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/densityfittingforce.cpp [438/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/optimization.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/math/optimization.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/math/optimization.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/optimization.cpp [439/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/utility.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/utility.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/utility.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/utility.cpp [440/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/commrec.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/commrec.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/commrec.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdtypes/commrec.cpp [441/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/makebondedlinks.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/makebondedlinks.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/makebondedlinks.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/makebondedlinks.cpp [442/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/invertmatrix.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/math/invertmatrix.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/math/invertmatrix.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/invertmatrix.cpp [443/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/do_fit.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/math/do_fit.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/math/do_fit.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/do_fit.cpp [444/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/domdec_constraints.cpp [445/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/localtopologychecker.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/localtopologychecker.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/localtopologychecker.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/localtopologychecker.cpp [446/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/domdec_setup.cpp [447/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/haloexchangesetup.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/haloexchangesetup.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/haloexchangesetup.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/haloexchangesetup.cpp [448/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/gausstransform.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/math/gausstransform.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/math/gausstransform.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/gausstransform.cpp [449/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/densityfit.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/math/densityfit.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/math/densityfit.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/densityfit.cpp [450/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/md_enums.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/md_enums.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/md_enums.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdtypes/md_enums.cpp [451/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/haloexchange.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/haloexchange.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/haloexchange.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/haloexchange.cpp [452/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/exponentialmovingaverage.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/math/exponentialmovingaverage.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/math/exponentialmovingaverage.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/exponentialmovingaverage.cpp [453/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/nrjac.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/math/nrjac.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/math/nrjac.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/nrjac.cpp [454/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/neldermead.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/math/neldermead.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/math/neldermead.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/neldermead.cpp [455/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/iforceprovider.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/iforceprovider.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/iforceprovider.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdtypes/iforceprovider.cpp [456/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/forcebuffers.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/forcebuffers.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/forcebuffers.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdtypes/forcebuffers.cpp [457/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/boxutilities.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/boxutilities.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/boxutilities.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/boxutilities.cpp [458/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/group.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/group.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/group.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdtypes/group.cpp [459/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/observableshistory.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/observableshistory.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/observableshistory.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdtypes/observableshistory.cpp [460/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbcenums.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbcenums.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbcenums.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/pbcenums.cpp [461/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/rstparser.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/rstparser.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/rstparser.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/onlinehelp/rstparser.cpp [462/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/reversetopology.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/reversetopology.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/reversetopology.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/reversetopology.cpp [463/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/onlinehelp/helpmanager.cpp [464/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/observablesreducer.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/observablesreducer.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/observablesreducer.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdtypes/observablesreducer.cpp [465/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/localtopology.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/localtopology.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/localtopology.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/localtopology.cpp [466/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/random/tabulatednormaldistribution.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/random/tabulatednormaldistribution.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/random/tabulatednormaldistribution.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/random/tabulatednormaldistribution.cpp [467/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/checkpointdata.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/checkpointdata.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/checkpointdata.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdtypes/checkpointdata.cpp [468/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/redistribute.cpp [469/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc_simd.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc_simd.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc_simd.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/pbc_simd.cpp [470/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/com.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/com.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/com.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/com.cpp [471/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/timing/external_tracing.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/timing/external_tracing.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/timing/external_tracing.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/external_tracing.cpp [472/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/timing/cyclecounter.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/timing/cyclecounter.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/timing/cyclecounter.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/cyclecounter.cpp [473/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/timing/walltime_accounting.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/timing/walltime_accounting.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/timing/walltime_accounting.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/walltime_accounting.cpp [474/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/multipletimestepping.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/multipletimestepping.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/multipletimestepping.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdtypes/multipletimestepping.cpp [475/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helptopic.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helptopic.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helptopic.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/onlinehelp/helptopic.cpp [476/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/random/seed.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/random/seed.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/random/seed.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/random/seed.cpp [477/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/interaction_const.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/interaction_const.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/interaction_const.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdtypes/interaction_const.cpp [478/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpformat.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpformat.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpformat.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/onlinehelp/helpformat.cpp [479/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/rmpbc.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/rmpbc.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/rmpbc.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/rmpbc.cpp [480/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbcmethods.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbcmethods.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbcmethods.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/pbcmethods.cpp [481/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/df_history.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/df_history.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/df_history.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdtypes/df_history.cpp [482/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/restraint/manager.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/restraint/manager.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/restraint/manager.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/restraint/manager.cpp [483/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/serialization/inmemoryserializer.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/serialization/inmemoryserializer.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/serialization/inmemoryserializer.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/inmemoryserializer.cpp [484/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tables/splineutil.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/tables/splineutil.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/tables/splineutil.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/tables/splineutil.cpp [485/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/ifunc.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/topology/ifunc.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/topology/ifunc.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/ifunc.cpp [486/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/forcefieldparameters.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/topology/forcefieldparameters.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/topology/forcefieldparameters.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/forcefieldparameters.cpp [487/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/block.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/topology/block.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/topology/block.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/block.cpp [488/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/energyhistory.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/energyhistory.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/energyhistory.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdtypes/energyhistory.cpp [489/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/atomsbuilder.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/topology/atomsbuilder.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/topology/atomsbuilder.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/atomsbuilder.cpp [490/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/awh_history.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/awh_history.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/awh_history.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdtypes/awh_history.cpp [491/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/pairlist.cpp [492/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/invblock.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/topology/invblock.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/topology/invblock.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/invblock.cpp [493/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpwritercontext.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpwritercontext.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpwritercontext.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/onlinehelp/helpwritercontext.cpp [494/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/restraint/restraintmdmodule.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/restraint/restraintmdmodule.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/restraint/restraintmdmodule.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/restraint/restraintmdmodule.cpp [495/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/pbc.cpp [496/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/threaded_force_buffer.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/threaded_force_buffer.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/threaded_force_buffer.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdtypes/threaded_force_buffer.cpp [497/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/exclusionblocks.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/topology/exclusionblocks.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/topology/exclusionblocks.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/exclusionblocks.cpp [498/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/atoms.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/topology/atoms.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/topology/atoms.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/atoms.cpp [499/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tables/cubicsplinetable.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/tables/cubicsplinetable.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/tables/cubicsplinetable.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/tables/cubicsplinetable.cpp [500/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/atomprop.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/topology/atomprop.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/topology/atomprop.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/atomprop.cpp [501/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/binsearch.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/binsearch.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/binsearch.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/binsearch.cpp [502/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/inputrec.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/inputrec.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/inputrec.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdtypes/inputrec.cpp [503/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tables/quadraticsplinetable.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/tables/quadraticsplinetable.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/tables/quadraticsplinetable.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/tables/quadraticsplinetable.cpp [504/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/mshift.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/mshift.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/mshift.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/mshift.cpp [505/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/angle_correction.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/angle_correction.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/angle_correction.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/angle_correction.cpp [506/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/idef.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/topology/idef.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/topology/idef.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/idef.cpp [507/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/timing/wallcycle.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/timing/wallcycle.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/timing/wallcycle.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/wallcycle.cpp [508/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/dens_filter.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/dens_filter.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/dens_filter.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/dens_filter.cpp [509/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/state.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/state.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/state.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdtypes/state.cpp [510/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/serialization/keyvaluetreeserializer.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/serialization/keyvaluetreeserializer.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/serialization/keyvaluetreeserializer.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/keyvaluetreeserializer.cpp [511/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/residuetypes.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/topology/residuetypes.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/topology/residuetypes.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/residuetypes.cpp [512/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/imd/imdsocket.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/imd/imdsocket.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/imd/imdsocket.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/imd/imdsocket.cpp [513/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/mtop_atomloops.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/topology/mtop_atomloops.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/topology/mtop_atomloops.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/mtop_atomloops.cpp [514/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectory/trajectoryframe.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectory/trajectoryframe.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectory/trajectoryframe.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectory/trajectoryframe.cpp [515/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectory/energyframe.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectory/energyframe.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectory/energyframe.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectory/energyframe.cpp [516/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tables/forcetable.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/tables/forcetable.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/tables/forcetable.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/tables/forcetable.cpp [517/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mimic/utilities.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mimic/utilities.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mimic/utilities.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mimic/utilities.cpp [518/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/topsort.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/topology/topsort.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/topology/topsort.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/topsort.cpp [519/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/eigio.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/eigio.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/eigio.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/eigio.cpp [520/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mimic/communicator_stub.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mimic/communicator_stub.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mimic/communicator_stub.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mimic/communicator_stub.cpp [521/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/cmat.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/cmat.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/cmat.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/cmat.cpp [522/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/symtab.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/topology/symtab.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/topology/symtab.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/symtab.cpp [523/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/fitahx.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/fitahx.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/fitahx.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/fitahx.cpp [524/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/embedded_system_preprocessing.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/topology/embedded_system_preprocessing.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/topology/embedded_system_preprocessing.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/embedded_system_preprocessing.cpp [525/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/dlist.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/dlist.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/dlist.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/dlist.cpp [526/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/topology.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/topology/topology.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/topology/topology.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/topology.cpp [527/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_angle.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_angle.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_angle.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_angle.cpp [528/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/anadih.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/anadih.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/anadih.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/anadih.cpp [529/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/domdec.cpp [530/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/cluster_methods.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/cluster_methods.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/cluster_methods.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/cluster_methods.cpp [531/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/imd/imd.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/imd/imd.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/imd/imd.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/imd/imd.cpp [532/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/mtop_util.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/topology/mtop_util.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/topology/mtop_util.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/mtop_util.cpp [533/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_bundle.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_bundle.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_bundle.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_bundle.cpp [534/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/partition.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/partition.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/partition.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/partition.cpp [535/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/index.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/topology/index.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/topology/index.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/index.cpp [536/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dielectric.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dielectric.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dielectric.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_dielectric.cpp [537/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_confrms.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_confrms.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_confrms.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_confrms.cpp [538/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_densmap.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_densmap.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_densmap.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_densmap.cpp [539/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_clustsize.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_clustsize.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_clustsize.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_clustsize.cpp [540/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_1x1.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_1x1.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_1x1.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_reference/kernel_ref_1x1.cpp [541/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_density.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_density.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_density.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_density.cpp [542/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_current.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_current.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_current.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_current.cpp [543/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_analyze.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_analyze.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_analyze.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_analyze.cpp [544/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_awh.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_awh.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_awh.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_awh.cpp [545/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_densorder.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_densorder.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_densorder.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_densorder.cpp [546/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_covar.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_covar.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_covar.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_covar.cpp [547/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dyecoupl.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dyecoupl.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dyecoupl.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_dyecoupl.cpp [548/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dos.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dos.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dos.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_dos.cpp [549/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_enemat.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_enemat.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_enemat.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_enemat.cpp [550/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_anaeig.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_anaeig.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_anaeig.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_anaeig.cpp [551/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_h2order.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_h2order.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_h2order.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_h2order.cpp [552/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_helix.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_helix.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_helix.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_helix.cpp [553/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_filter.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_filter.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_filter.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_filter.cpp [554/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_cluster.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_cluster.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_cluster.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_cluster.cpp [555/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_lie.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_lie.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_lie.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_lie.cpp [556/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_gyrate.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_gyrate.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_gyrate.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_gyrate.cpp [557/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_bar.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_bar.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_bar.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_bar.cpp [558/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dipoles.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dipoles.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dipoles.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_dipoles.cpp [559/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_helixorient.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_helixorient.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_helixorient.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_helixorient.cpp [560/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_mdmat.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_mdmat.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_mdmat.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_mdmat.cpp [561/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_make_edi.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_make_edi.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_make_edi.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_make_edi.cpp [562/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/essentialdynamics/edsam.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/essentialdynamics/edsam.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/essentialdynamics/edsam.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/essentialdynamics/edsam.cpp [563/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmens.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmens.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmens.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_nmens.cpp [564/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rama.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rama.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rama.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_rama.cpp [565/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_hydorder.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_hydorder.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_hydorder.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_hydorder.cpp [566/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmtraj.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmtraj.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmtraj.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_nmtraj.cpp [567/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_saxs.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_saxs.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_saxs.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_saxs.cpp [568/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_principal.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_principal.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_principal.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_principal.cpp [569/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmeig.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmeig.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmeig.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_nmeig.cpp [570/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/swap/swapcoords.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/swap/swapcoords.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/swap/swapcoords.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/swap/swapcoords.cpp [571/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rotacf.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rotacf.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rotacf.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_rotacf.cpp [572/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_mindist.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_mindist.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_mindist.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_mindist.cpp [573/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_polystat.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_polystat.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_polystat.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_polystat.cpp [574/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_potential.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_potential.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_potential.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_potential.cpp [575/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_saltbr.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_saltbr.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_saltbr.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_saltbr.cpp [576/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rotmat.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rotmat.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rotmat.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_rotmat.cpp [577/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sigeps.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sigeps.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sigeps.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_sigeps.cpp [578/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_disre.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_disre.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_disre.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_disre.cpp [579/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_chi.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_chi.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_chi.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_chi.cpp [580/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sans.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sans.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sans.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_sans.cpp [581/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_order.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_order.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_order.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_order.cpp [582/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rmsf.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rmsf.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rmsf.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_rmsf.cpp [583/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_energy.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_energy.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_energy.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_energy.cpp [584/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rmsdist.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rmsdist.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rmsdist.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_rmsdist.cpp [585/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_wheel.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_wheel.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_wheel.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_wheel.cpp [586/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_spatial.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_spatial.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_spatial.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_spatial.cpp [587/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_spol.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_spol.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_spol.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_spol.cpp [588/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sorient.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sorient.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sorient.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_sorient.cpp [589/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/powerspect.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/powerspect.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/powerspect.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/powerspect.cpp [590/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmr.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmr.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmr.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_nmr.cpp [591/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_trjorder.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_trjorder.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_trjorder.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_trjorder.cpp [592/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/thermochemistry.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/thermochemistry.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/thermochemistry.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/thermochemistry.cpp [593/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_velacc.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_velacc.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_velacc.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_velacc.cpp [594/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/princ.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/princ.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/princ.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/princ.cpp [595/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/nrama.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/nrama.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/nrama.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/nrama.cpp [596/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_tcaf.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_tcaf.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_tcaf.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_tcaf.cpp [597/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/calch.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/calch.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/calch.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/calch.cpp [598/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/pp2shift.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/pp2shift.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/pp2shift.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/pp2shift.cpp [599/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/hxprops.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/hxprops.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/hxprops.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/hxprops.cpp [600/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/compute_io.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/compute_io.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/compute_io.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/compute_io.cpp [601/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_vanhove.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_vanhove.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_vanhove.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_vanhove.cpp [602/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rms.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rms.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rms.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_rms.cpp [603/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/sfactor.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/sfactor.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/sfactor.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/sfactor.cpp [604/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/nsfactor.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/nsfactor.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/nsfactor.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/nsfactor.cpp [605/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_bond_atomtype.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_bond_atomtype.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_bond_atomtype.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/gpp_bond_atomtype.cpp [606/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sham.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sham.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sham.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_sham.cpp [607/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/add_par.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/add_par.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/add_par.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/add_par.cpp [608/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/fflibutil.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/fflibutil.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/fflibutil.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/fflibutil.cpp [609/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_traj.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_traj.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_traj.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_traj.cpp [610/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/makeexclusiondistances.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/makeexclusiondistances.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/makeexclusiondistances.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/makeexclusiondistances.cpp [611/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/convparm.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/convparm.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/convparm.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/convparm.cpp [612/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_maxwell_velocities.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_maxwell_velocities.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_maxwell_velocities.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/gen_maxwell_velocities.cpp [613/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genrestr.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genrestr.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genrestr.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/genrestr.cpp [614/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/hizzie.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/hizzie.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/hizzie.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/hizzie.cpp [615/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_nextnb.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_nextnb.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_nextnb.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/gpp_nextnb.cpp [616/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genconf.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genconf.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genconf.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/genconf.cpp [617/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/massrepartitioning.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/massrepartitioning.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/massrepartitioning.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/massrepartitioning.cpp [618/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pgutil.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pgutil.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pgutil.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/pgutil.cpp [619/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/editconf.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/editconf.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/editconf.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/editconf.cpp [620/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/nm2type.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/nm2type.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/nm2type.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/nm2type.cpp [621/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/h_db.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/h_db.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/h_db.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/h_db.cpp [622/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genhydro.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genhydro.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genhydro.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/genhydro.cpp [623/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/hackblock.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/hackblock.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/hackblock.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/hackblock.cpp [624/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genion.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genion.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genion.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/genion.cpp [625/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_atomtype.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_atomtype.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_atomtype.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/gpp_atomtype.cpp [626/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readrot.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readrot.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readrot.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/readrot.cpp [627/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gmxcpp.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gmxcpp.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gmxcpp.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/gmxcpp.cpp [628/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/tomorse.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/tomorse.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/tomorse.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/tomorse.cpp [629/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/crosscorr.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/crosscorr.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/crosscorr.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/correlationfunctions/crosscorr.cpp [630/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_wham.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_wham.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_wham.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_wham.cpp [631/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topdirs.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topdirs.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topdirs.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/topdirs.cpp [632/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_xpm2ps.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_xpm2ps.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_xpm2ps.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_xpm2ps.cpp [633/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topshake.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topshake.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topshake.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/topshake.cpp [634/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/toputil.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/toputil.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/toputil.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/toputil.cpp [635/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datamodule.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datamodule.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datamodule.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/analysisdata/datamodule.cpp [636/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/gmx_lmcurve.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/gmx_lmcurve.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/gmx_lmcurve.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/correlationfunctions/gmx_lmcurve.cpp [637/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/insert_molecules.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/insert_molecules.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/insert_molecules.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/insert_molecules.cpp [638/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/polynomials.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/polynomials.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/polynomials.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/correlationfunctions/polynomials.cpp [639/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_hbond.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_hbond.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_hbond.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_hbond.cpp [640/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/integrate.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/integrate.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/integrate.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/correlationfunctions/integrate.cpp [641/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/manyautocorrelation.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/manyautocorrelation.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/manyautocorrelation.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/correlationfunctions/manyautocorrelation.cpp [642/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/expfit.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/expfit.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/expfit.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/correlationfunctions/expfit.cpp [643/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/statistics/statistics.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/statistics/statistics.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/statistics/statistics.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/statistics/statistics.cpp [644/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/xlate.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/xlate.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/xlate.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/xlate.cpp [645/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/dataframe.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/dataframe.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/dataframe.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/analysisdata/dataframe.cpp [646/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/dataproxy.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/dataproxy.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/dataproxy.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/analysisdata/dataproxy.cpp [647/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/analysisdata.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/analysisdata.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/analysisdata.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/analysisdata/analysisdata.cpp [648/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/arraydata.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/arraydata.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/arraydata.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/analysisdata/arraydata.cpp [649/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/frameaverager.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/frameaverager.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/frameaverager.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/analysisdata/modules/frameaverager.cpp [650/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/specbond.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/specbond.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/specbond.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/specbond.cpp [651/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/abstractdata.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/abstractdata.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/abstractdata.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/analysisdata/abstractdata.cpp [652/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/solvate.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/solvate.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/solvate.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/solvate.cpp [653/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/autocorr.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/autocorr.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/autocorr.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/correlationfunctions/autocorr.cpp [654/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_ad.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_ad.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_ad.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/gen_ad.cpp [655/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datamodulemanager.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datamodulemanager.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datamodulemanager.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/analysisdata/datamodulemanager.cpp [656/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/average.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/average.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/average.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/analysisdata/modules/average.cpp [657/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadaptercontainer.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadaptercontainer.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadaptercontainer.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/coordinateio/outputadaptercontainer.cpp [658/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setstarttime.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setstarttime.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setstarttime.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/coordinateio/outputadapters/setstarttime.cpp [659/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/displacement.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/displacement.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/displacement.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/analysisdata/modules/displacement.cpp /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/analysisdata/modules/displacement.cpp: In member function ‘virtual void gmx::AnalysisDataDisplacementModule::frameFinished(const gmx::AnalysisDataFrameHeader&)’: /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/analysisdata/modules/displacement.cpp:279:13: warning: variable ‘k’ set but not used [-Wunused-but-set-variable=] 279 | int k = 1; | ^ At top level: cc1plus: note: unrecognized command-line option ‘-Wno-cast-function-type-strict’ may have been intended to silence earlier diagnostics cc1plus: note: unrecognized command-line option ‘-Wno-suggest-destructor-override’ may have been intended to silence earlier diagnostics [660/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/settimestep.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/settimestep.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/settimestep.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/coordinateio/outputadapters/settimestep.cpp [661/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/x2top.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/x2top.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/x2top.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/x2top.cpp [662/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/ter_db.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/ter_db.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/ter_db.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/ter_db.cpp [663/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setprecision.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setprecision.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setprecision.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/coordinateio/outputadapters/setprecision.cpp [664/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setforces.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setforces.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setforces.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/coordinateio/outputadapters/setforces.cpp [665/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setvelocities.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setvelocities.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setvelocities.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/coordinateio/outputadapters/setvelocities.cpp [666/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/frameconverters/register.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/frameconverters/register.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/frameconverters/register.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/coordinateio/frameconverters/register.cpp [667/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/outputselector.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/outputselector.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/outputselector.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/coordinateio/outputadapters/outputselector.cpp [668/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setatoms.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setatoms.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setatoms.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/coordinateio/outputadapters/setatoms.cpp [669/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/resall.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/resall.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/resall.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/resall.cpp [670/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/lifetime.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/lifetime.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/lifetime.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/analysisdata/modules/lifetime.cpp [671/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datastorage.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datastorage.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datastorage.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/analysisdata/datastorage.cpp [672/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules.cpp [673/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/requirements.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/requirements.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/requirements.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/coordinateio/requirements.cpp [674/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/analysissettings.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/analysissettings.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/analysissettings.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/analysissettings.cpp [675/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topio.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topio.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topio.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/topio.cpp [676/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/plot.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/plot.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/plot.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/analysisdata/modules/plot.cpp [677/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/coordinatefile.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/coordinatefile.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/coordinatefile.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/coordinateio/coordinatefile.cpp [678/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/isotope.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/isotope.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/isotope.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/isotope.cpp [679/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/convert_trj.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/convert_trj.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/convert_trj.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/convert_trj.cpp [680/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/cmdlinerunner.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/cmdlinerunner.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/cmdlinerunner.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/cmdlinerunner.cpp [681/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_vsite.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_vsite.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_vsite.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/gen_vsite.cpp [682/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/vsite_parm.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/vsite_parm.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/vsite_parm.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/vsite_parm.cpp [683/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/histogram.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/histogram.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/histogram.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/analysisdata/modules/histogram.cpp [684/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/analysismodule.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/analysismodule.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/analysismodule.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/analysismodule.cpp [685/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/extract_cluster.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/extract_cluster.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/extract_cluster.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/extract_cluster.cpp [686/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/gyrate.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/gyrate.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/gyrate.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/gyrate.cpp [687/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering-debye-sans.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering-debye-sans.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering-debye-sans.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/scattering-debye-sans.cpp [688/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/distance.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/distance.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/distance.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/distance.cpp [689/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/freevolume.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/freevolume.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/freevolume.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/freevolume.cpp [690/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering-debye-saxs.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering-debye-saxs.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering-debye-saxs.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/scattering-debye-saxs.cpp [691/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scatteringfactors.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scatteringfactors.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scatteringfactors.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/scatteringfactors.cpp [692/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2top.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2top.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2top.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/pdb2top.cpp [693/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/pairdist.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/pairdist.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/pairdist.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/pairdist.cpp [694/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering-debye.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering-debye.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering-debye.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/scattering-debye.cpp [695/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/angle.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/angle.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/angle.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/angle.cpp [696/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_4x4.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_4x4.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_4x4.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_reference/kernel_ref_4x4.cpp [697/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/trajectory.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/trajectory.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/trajectory.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/trajectory.cpp [698/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/rdf.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/rdf.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/rdf.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/rdf.cpp [699/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/conformation_utilities.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/conformation_utilities.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/conformation_utilities.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxlib/conformation_utilities.cpp [700/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/surfacearea.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/surfacearea.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/surfacearea.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/surfacearea.cpp [701/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tools/mk_angndx.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/tools/mk_angndx.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/tools/mk_angndx.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/tools/mk_angndx.cpp [702/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/topologyinformation.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/topologyinformation.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/topologyinformation.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/topologyinformation.cpp [703/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/network.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/network.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/network.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxlib/network.cpp [704/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nrnb.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nrnb.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nrnb.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxlib/nrnb.cpp [705/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/runnercommon.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/runnercommon.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/runnercommon.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/runnercommon.cpp [706/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/checkpointhandler.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/checkpointhandler.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/checkpointhandler.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/checkpointhandler.cpp [707/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/scattering.cpp [708/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/sasa.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/sasa.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/sasa.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/sasa.cpp [709/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calcvir.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calcvir.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calcvir.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/calcvir.cpp [710/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calcmu.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calcmu.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calcmu.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/calcmu.cpp [711/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tools/eneconv.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/tools/eneconv.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/tools/eneconv.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/tools/eneconv.cpp [712/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tools/report_methods.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/tools/report_methods.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/tools/report_methods.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/tools/report_methods.cpp [713/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/boxdeformation.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/boxdeformation.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/boxdeformation.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/boxdeformation.cpp [714/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/broadcaststructs.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/broadcaststructs.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/broadcaststructs.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/broadcaststructs.cpp [715/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/energydrifttracker.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/energydrifttracker.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/energydrifttracker.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/energydrifttracker.cpp [716/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tools/dump.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/tools/dump.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/tools/dump.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/tools/dump.cpp [717/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tools/check.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/tools/check.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/tools/check.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/tools/check.cpp [718/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/select.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/select.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/select.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/select.cpp [719/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/msd.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/msd.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/msd.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/msd.cpp [720/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/expanded_internal.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/expanded_internal.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/expanded_internal.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/expanded_internal.cpp [721/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/ebin.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/ebin.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/ebin.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/ebin.cpp [722/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tools/trjcat.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/tools/trjcat.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/tools/trjcat.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/tools/trjcat.cpp [723/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/dssp.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/dssp.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/dssp.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/dssp.cpp [724/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/grompp.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/grompp.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/grompp.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/grompp.cpp [725/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tools/pme_error.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/tools/pme_error.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/tools/pme_error.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/tools/pme_error.cpp [726/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/freeenergyparameters.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/freeenergyparameters.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/freeenergyparameters.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/freeenergyparameters.cpp [727/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/lincs_constraint_group_sizes.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/lincs_constraint_group_sizes.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/lincs_constraint_group_sizes.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/lincs_constraint_group_sizes.cpp [728/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constraintrange.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constraintrange.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constraintrange.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/constraintrange.cpp [729/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tools/make_ndx.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/tools/make_ndx.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/tools/make_ndx.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/tools/make_ndx.cpp [730/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/enerdata_utils.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/enerdata_utils.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/enerdata_utils.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/enerdata_utils.cpp [731/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/gmx_omp_nthreads.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/gmx_omp_nthreads.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/gmx_omp_nthreads.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/gmx_omp_nthreads.cpp [732/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constraint_gpu_helpers.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constraint_gpu_helpers.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constraint_gpu_helpers.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/constraint_gpu_helpers.cpp [733/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdgraph_gpu_impl.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdgraph_gpu_impl.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdgraph_gpu_impl.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/mdgraph_gpu_impl.cpp [734/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tools/trjconv.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/tools/trjconv.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/tools/trjconv.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/tools/trjconv.cpp [735/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/toppush.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/toppush.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/toppush.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/toppush.cpp [736/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/groupcoord.cpp [737/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tools/convert_tpr.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/tools/convert_tpr.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/tools/convert_tpr.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/tools/convert_tpr.cpp [738/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/dispersioncorrection.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/dispersioncorrection.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/dispersioncorrection.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/dispersioncorrection.cpp [739/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/rbin.cpp [740/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/simulationsignal.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/simulationsignal.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/simulationsignal.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/simulationsignal.cpp [741/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/force.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/force.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/force.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/force.cpp [742/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tools/tune_pme.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/tools/tune_pme.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/tools/tune_pme.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/tools/tune_pme.cpp [743/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sighandler.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sighandler.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sighandler.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/sighandler.cpp [744/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/tgroup.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/tgroup.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/tgroup.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/tgroup.cpp [745/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stophandler.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stophandler.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stophandler.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/stophandler.cpp [746/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2gmx.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2gmx.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2gmx.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/pdb2gmx.cpp [747/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rf_util.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rf_util.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rf_util.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/rf_util.cpp [748/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/resethandler.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/resethandler.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/resethandler.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/resethandler.cpp [749/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/hbond.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/hbond.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/hbond.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/hbond.cpp [750/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/perf_est.cpp [751/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calc_verletbuf.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calc_verletbuf.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calc_verletbuf.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/calc_verletbuf.cpp [752/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/mdebin_bar.cpp [753/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/gpuforcereduction_impl_stubs.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/gpuforcereduction_impl_stubs.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/gpuforcereduction_impl_stubs.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/gpuforcereduction_impl_stubs.cpp [754/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/shake.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/shake.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/shake.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/shake.cpp [755/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stat.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stat.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stat.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/stat.cpp [756/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constr.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constr.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constr.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/constr.cpp [757/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/coupling.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/coupling.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/coupling.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/coupling.cpp [758/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readpull.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readpull.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readpull.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/readpull.cpp [759/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update_constrain_gpu_impl_stubs.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update_constrain_gpu_impl_stubs.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update_constrain_gpu_impl_stubs.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/update_constrain_gpu_impl_stubs.cpp [760/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/splitter.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/splitter.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/splitter.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/splitter.cpp [761/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdatoms.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdatoms.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdatoms.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/mdatoms.cpp [762/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/md_support.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/md_support.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/md_support.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/md_support.cpp [763/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/expanded.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/expanded.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/expanded.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/expanded.cpp [764/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/mdoutf.cpp [765/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/trajectory_writing.cpp [766/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wholemoleculetransform.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wholemoleculetransform.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wholemoleculetransform.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/wholemoleculetransform.cpp [767/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update_vv.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update_vv.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update_vv.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/update_vv.cpp [768/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/correlationgrid.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/correlationgrid.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/correlationgrid.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/awh/correlationgrid.cpp [769/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/pointstate.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/pointstate.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/pointstate.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/awh/pointstate.cpp [770/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingoutputprovider.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingoutputprovider.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingoutputprovider.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/densityfitting/densityfittingoutputprovider.cpp [771/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biasparams.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biasparams.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biasparams.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/awh/biasparams.cpp [772/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/energyoutput.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/energyoutput.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/energyoutput.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/energyoutput.cpp [773/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/histogramsize.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/histogramsize.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/histogramsize.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/awh/histogramsize.cpp [774/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/wall.cpp [775/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroupscog.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroupscog.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroupscog.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/updategroupscog.cpp [776/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/correlationtensor.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/correlationtensor.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/correlationtensor.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/awh/correlationtensor.cpp [777/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/coordstate.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/coordstate.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/coordstate.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/awh/coordstate.cpp [778/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/correlationhistory.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/correlationhistory.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/correlationhistory.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/awh/correlationhistory.cpp [779/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingparameters.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingparameters.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingparameters.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/densityfitting/densityfittingparameters.cpp [780/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biassharing.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biassharing.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biassharing.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/awh/biassharing.cpp [781/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroups.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroups.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroups.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/updategroups.cpp [782/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingamplitudelookup.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingamplitudelookup.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingamplitudelookup.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/densityfitting/densityfittingamplitudelookup.cpp [783/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vcm.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vcm.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vcm.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/vcm.cpp [784/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/membed.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/membed.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/membed.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/membed.cpp [785/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biasgrid.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biasgrid.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biasgrid.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/awh/biasgrid.cpp [786/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/settle.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/settle.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/settle.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/settle.cpp [787/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/bias.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/bias.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/bias.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/awh/bias.cpp [788/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biaswriter.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biaswriter.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biaswriter.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/awh/biaswriter.cpp [789/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/nnpot/binary_information.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/nnpot/binary_information.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/nnpot/binary_information.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/nnpot/binary_information.cpp [790/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/electricfield.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/electricfield.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/electricfield.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/electricfield.cpp [791/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/forcerec.cpp /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/forcerec.cpp: In function ‘std::vector makeLJPmeC6GridCorrectionParameters(int, gmx::ArrayRef, LongRangeVdW)’: /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/forcerec.cpp:181:23: warning: variable ‘k’ set but not used [-Wunused-but-set-variable=] 181 | int k = 0; | ^ At top level: cc1plus: note: unrecognized command-line option ‘-Wno-cast-function-type-strict’ may have been intended to silence earlier diagnostics cc1plus: note: unrecognized command-line option ‘-Wno-suggest-destructor-override’ may have been intended to silence earlier diagnostics [792/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarssimulationsparameters.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarssimulationsparameters.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarssimulationsparameters.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/colvars/colvarssimulationsparameters.cpp [793/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readir.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readir.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readir.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/readir.cpp [794/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmforceprovider_stub.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmforceprovider_stub.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmforceprovider_stub.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/qmmm/qmmmforceprovider_stub.cpp [795/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/plumed/plumedOptions.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/plumed/plumedOptions.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/plumed/plumedOptions.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/plumed/plumedOptions.cpp [796/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/awh.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/awh.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/awh.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/awh/awh.cpp [797/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmforceproviderstate.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmforceproviderstate.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmforceproviderstate.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/qmmm/qmmmforceproviderstate.cpp [798/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/lincs.cpp /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/lincs.cpp: In function ‘void gmx::lincs_update_atoms(Lincs*, int, real, ArrayRef, ArrayRef >, ArrayRef, real (*)[3])’: /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/lincs.cpp:513:19: warning: ‘master’ construct deprecated since OpenMP 5.1, use ‘masked’ [-Wdeprecated-openmp] 513 | #pragma omp master | ^ /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/lincs.cpp: In function ‘void gmx::do_lincs(ArrayRefWithPadding >, ArrayRefWithPadding >, const real (*)[3], t_pbc*, Lincs*, int, ArrayRef, gmx_domdec_t*, bool, real, bool*, real, ArrayRef >, bool, real (*)[3], gmx_wallcycle*)’: /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/lincs.cpp:1189:19: warning: ‘master’ construct deprecated since OpenMP 5.1, use ‘masked’ [-Wdeprecated-openmp] 1189 | #pragma omp master | ^ At top level: cc1plus: note: unrecognized command-line option ‘-Wno-cast-function-type-strict’ may have been intended to silence earlier diagnostics cc1plus: note: unrecognized command-line option ‘-Wno-suggest-destructor-override’ may have been intended to silence earlier diagnostics [799/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/listed_internal.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/listed_internal.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/listed_internal.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/listed_forces/listed_internal.cpp [800/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/nnpot/nnpotforceprovider_stub.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/nnpot/nnpotforceprovider_stub.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/nnpot/nnpotforceprovider_stub.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/nnpot/nnpotforceprovider_stub.cpp [801/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sim_util.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sim_util.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sim_util.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/sim_util.cpp [802/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarspreprocessor.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarspreprocessor.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarspreprocessor.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/colvars/colvarspreprocessor.cpp [803/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/listed_forces_gpu_impl.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/listed_forces_gpu_impl.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/listed_forces_gpu_impl.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/listed_forces/listed_forces_gpu_impl.cpp [804/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmminputgenerator.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmminputgenerator.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmminputgenerator.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/qmmm/qmmminputgenerator.cpp [805/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/restcbt.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/restcbt.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/restcbt.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/listed_forces/restcbt.cpp [806/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfitting.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfitting.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfitting.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/densityfitting/densityfitting.cpp [807/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/read_params.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/read_params.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/read_params.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/awh/read_params.cpp [808/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/update.cpp [809/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/plumed/plumedMDModule.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/plumed/plumedMDModule.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/plumed/plumedMDModule.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/plumed/plumedMDModule.cpp [810/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingforceprovider.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingforceprovider.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingforceprovider.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/densityfitting/densityfittingforceprovider.cpp [811/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/disre.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/disre.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/disre.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/listed_forces/disre.cpp [812/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarproxygromacs.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarproxygromacs.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarproxygromacs.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/colvars/colvarproxygromacs.cpp [813/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald_utils.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald_utils.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald_utils.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/ewald_utils.cpp [814/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/manage_threading.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/manage_threading.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/manage_threading.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/listed_forces/manage_threading.cpp [815/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/calculate_spline_moduli.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/calculate_spline_moduli.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/calculate_spline_moduli.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/calculate_spline_moduli.cpp [816/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/position_restraints.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/position_restraints.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/position_restraints.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/listed_forces/position_restraints.cpp [817/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmm.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmm.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmm.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/qmmm/qmmm.cpp [818/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarsMDModule.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarsMDModule.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarsMDModule.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/colvars/colvarsMDModule.cpp [819/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/nnpot/nnpot.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/nnpot/nnpot.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/nnpot/nnpot.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/nnpot/nnpot.cpp [820/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_program.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_program.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_program.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/pme_gpu_program.cpp [821/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/long_range_correction.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/long_range_correction.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/long_range_correction.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/long_range_correction.cpp [822/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_gpu_buffer_ops.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_gpu_buffer_ops.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_gpu_buffer_ops.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/nbnxm_gpu_buffer_ops.cpp [823/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_spline_work.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_spline_work.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_spline_work.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/pme_spline_work.cpp [824/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gather.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gather.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gather.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/pme_gather.cpp [825/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/pairs.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/pairs.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/pairs.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/listed_forces/pairs.cpp [826/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/ewald.cpp [827/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarsforceprovider.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarsforceprovider.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarsforceprovider.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/colvars/colvarsforceprovider.cpp [828/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/listed_forces.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/listed_forces.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/listed_forces.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/listed_forces/listed_forces.cpp [829/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vsite.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vsite.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vsite.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/vsite.cpp [830/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biasstate.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biasstate.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biasstate.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/awh/biasstate.cpp [831/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_pp_comm_gpu_impl.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_pp_comm_gpu_impl.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_pp_comm_gpu_impl.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/pme_pp_comm_gpu_impl.cpp [832/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fft/binary_information.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fft/binary_information.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fft/binary_information.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fft/binary_information.cpp [833/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_coordinate_receiver_gpu_impl.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_coordinate_receiver_gpu_impl.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_coordinate_receiver_gpu_impl.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/pme_coordinate_receiver_gpu_impl.cpp [834/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_force_sender_gpu_impl.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_force_sender_gpu_impl.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_force_sender_gpu_impl.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/pme_force_sender_gpu_impl.cpp [835/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/orires.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/orires.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/orires.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/listed_forces/orires.cpp [836/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_pp.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_pp.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_pp.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/pme_pp.cpp [837/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/plumed/plumedforceprovider.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/plumed/plumedforceprovider.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/plumed/plumedforceprovider.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/plumed/plumedforceprovider.cpp [838/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpueventsynchronizer_helpers.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpueventsynchronizer_helpers.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpueventsynchronizer_helpers.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gpu_utils/gpueventsynchronizer_helpers.cpp [839/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_program_impl_ocl.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_program_impl_ocl.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_program_impl_ocl.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/pme_gpu_program_impl_ocl.cpp [840/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fft/fft.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fft/fft.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fft/fft.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fft/fft.cpp [841/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fft/calcgrid.cpp [842/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_ocl_stubs.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_ocl_stubs.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_ocl_stubs.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/pme_gpu_ocl_stubs.cpp [843/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingoptions.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingoptions.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingoptions.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/densityfitting/densityfittingoptions.cpp [844/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_redistribute.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_redistribute.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_redistribute.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/pme_redistribute.cpp [845/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_grid.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_grid.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_grid.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/pme_grid.cpp [846/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/pmalloc.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/pmalloc.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/pmalloc.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gpu_utils/pmalloc.cpp [847/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/device_stream_manager.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/device_stream_manager.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/device_stream_manager.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gpu_utils/device_stream_manager.cpp [848/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/binary_information.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/binary_information.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/binary_information.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gpu_utils/binary_information.cpp [849/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/clfftinitializer.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/clfftinitializer.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/clfftinitializer.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gpu_utils/clfftinitializer.cpp [850/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gpu_utils/gpu_utils.cpp [851/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fft/parallel_3dfft.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fft/parallel_3dfft.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fft/parallel_3dfft.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fft/parallel_3dfft.cpp [852/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fft/gpu_3dfft.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fft/gpu_3dfft.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fft/gpu_3dfft.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fft/gpu_3dfft.cpp [853/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/nvshmem_manager.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/nvshmem_manager.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/nvshmem_manager.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gpu_utils/nvshmem_manager.cpp [854/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils_impl.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils_impl.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils_impl.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gpu_utils/gpu_utils_impl.cpp [855/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fft/gpu_3dfft_impl.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fft/gpu_3dfft_impl.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fft/gpu_3dfft_impl.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fft/gpu_3dfft_impl.cpp [856/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarsoptions.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarsoptions.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarsoptions.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/colvars/colvarsoptions.cpp [857/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_timings.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_timings.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_timings.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/pme_gpu_timings.cpp [858/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_load_balancing.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_load_balancing.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_load_balancing.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/pme_load_balancing.cpp [859/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fft/fft_fftw3.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fft/fft_fftw3.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fft/fft_fftw3.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fft/fft_fftw3.cpp [860/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/hostallocator.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/hostallocator.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/hostallocator.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gpu_utils/hostallocator.cpp [861/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fft/gpu_3dfft_ocl.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fft/gpu_3dfft_ocl.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fft/gpu_3dfft_ocl.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fft/gpu_3dfft_ocl.cpp [862/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_spread.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_spread.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_spread.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/pme_spread.cpp [863/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fft/fft5d.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fft/fft5d.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fft/fft5d.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fft/fft5d.cpp [864/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/pme_gpu.cpp [865/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/hardware/identifyavx512fmaunits.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/hardware/identifyavx512fmaunits.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/hardware/identifyavx512fmaunits.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/hardware/identifyavx512fmaunits.cpp [866/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_solve.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_solve.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_solve.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/pme_solve.cpp [867/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/device_context_ocl.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/device_context_ocl.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/device_context_ocl.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gpu_utils/device_context_ocl.cpp [868/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_gpu_data_mgmt.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_gpu_data_mgmt.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_gpu_data_mgmt.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/nbnxm_gpu_data_mgmt.cpp [869/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/device_stream_ocl.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/device_stream_ocl.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/device_stream_ocl.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gpu_utils/device_stream_ocl.cpp [870/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/oclutils.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/oclutils.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/oclutils.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gpu_utils/oclutils.cpp [871/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/legacymdrunoptions.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrun/legacymdrunoptions.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/legacymdrunoptions.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/legacymdrunoptions.cpp [872/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/ocl_caching.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/ocl_caching.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/ocl_caching.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gpu_utils/ocl_caching.cpp [873/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/legacysimulator.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrun/legacysimulator.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/legacysimulator.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/legacysimulator.cpp [874/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -DGMX_SIMD_ENUM_VALUE="gmx::SimdType::Arm_NeonAsimd" -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/hardware/simd_support.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/hardware/simd_support.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/hardware/simd_support.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/hardware/simd_support.cpp [875/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/nnpot/nnpotoptions.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/nnpot/nnpotoptions.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/nnpot/nnpotoptions.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/nnpot/nnpotoptions.cpp [876/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_only.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_only.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_only.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/pme_only.cpp [877/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/hardware/device_management_common.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/hardware/device_management_common.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/hardware/device_management_common.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/hardware/device_management_common.cpp [878/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/membedholder.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrun/membedholder.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/membedholder.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/membedholder.cpp [879/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/bonded.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/bonded.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/bonded.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/listed_forces/bonded.cpp [880/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationcontext.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationcontext.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationcontext.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/simulationcontext.cpp [881/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/hardware/detecthardware.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/hardware/detecthardware.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/hardware/detecthardware.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/hardware/detecthardware.cpp [882/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/hardware/device_management_ocl.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/hardware/device_management_ocl.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/hardware/device_management_ocl.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/hardware/device_management_ocl.cpp [883/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion-gen.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion-gen.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion-gen.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/gromacs/utility/baseversion-gen.cpp [884/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/freeenergy.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/freeenergy.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/freeenergy.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrunutility/freeenergy.cpp [885/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationinputhandle.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationinputhandle.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationinputhandle.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/simulationinputhandle.cpp [886/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/print_validation.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/print_validation.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/print_validation.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrunutility/print_validation.cpp [887/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmoptions.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmoptions.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmoptions.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/qmmm/qmmmoptions.cpp [888/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/ocl_compiler.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/ocl_compiler.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/ocl_compiler.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gpu_utils/ocl_compiler.cpp [889/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/hardware/printhardware.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/hardware/printhardware.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/hardware/printhardware.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/hardware/printhardware.cpp [890/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/logging.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/logging.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/logging.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrunutility/logging.cpp [891/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/printtime.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/printtime.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/printtime.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrunutility/printtime.cpp [892/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/mdmodulesnotifiers.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/mdmodulesnotifiers.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/mdmodulesnotifiers.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrunutility/mdmodulesnotifiers.cpp [893/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationinput.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationinput.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationinput.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/simulationinput.cpp [894/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/binary_information.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrun/binary_information.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/binary_information.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/binary_information.cpp [895/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/plainpairlistranges.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/plainpairlistranges.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/plainpairlistranges.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrunutility/plainpairlistranges.cpp [896/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/hardware/cpuinfo.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/hardware/cpuinfo.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/hardware/cpuinfo.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/hardware/cpuinfo.cpp [897/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/md5.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/md5.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/md5.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/md5.cpp [898/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/filetypes.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/filetypes.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/filetypes.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/filetypes.cpp [899/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/multisim.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/multisim.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/multisim.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrunutility/multisim.cpp [900/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/replicaexchange.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrun/replicaexchange.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/replicaexchange.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/replicaexchange.cpp [901/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/gmxfio.cpp [902/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/espio.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/espio.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/espio.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/espio.cpp [903/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/confio.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/confio.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/confio.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/confio.cpp [904/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/g96io.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/g96io.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/g96io.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/g96io.cpp [905/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulatorbuilder.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulatorbuilder.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulatorbuilder.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/simulatorbuilder.cpp [906/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio_xdr.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio_xdr.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio_xdr.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/gmxfio_xdr.cpp [907/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/mrcdensitymapheader.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/mrcdensitymapheader.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/mrcdensitymapheader.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/mrcdensitymapheader.cpp [908/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/mimic.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrun/mimic.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/mimic.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/mimic.cpp [909/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/mrcserializer.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/mrcserializer.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/mrcserializer.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/mrcserializer.cpp [910/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/oenv.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/oenv.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/oenv.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/oenv.cpp [911/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/libxdrf.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/libxdrf.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/libxdrf.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/libxdrf.cpp [912/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/mtxio.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/mtxio.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/mtxio.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/mtxio.cpp [913/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/groio.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/groio.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/groio.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/groio.cpp [914/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/rerun.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrun/rerun.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/rerun.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/rerun.cpp [915/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/handlerestart.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/handlerestart.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/handlerestart.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrunutility/handlerestart.cpp [916/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/timecontrol.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/timecontrol.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/timecontrol.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/timecontrol.cpp [917/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/pme.cpp [918/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_internal.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_internal.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_internal.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/pme_gpu_internal.cpp [919/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/hardware/hardwaretopology.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/hardware/hardwaretopology.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/hardware/hardwaretopology.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/hardware/hardwaretopology.cpp [920/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/enxio.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/enxio.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/enxio.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/enxio.cpp [921/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/mdmodules.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrun/mdmodules.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/mdmodules.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/mdmodules.cpp [922/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/mrcdensitymap.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/mrcdensitymap.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/mrcdensitymap.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/mrcdensitymap.cpp [923/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/xdrd.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/xdrd.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/xdrd.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/xdrd.cpp [924/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/trrio.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/trrio.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/trrio.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/trrio.cpp [925/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/threadaffinity.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/threadaffinity.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/threadaffinity.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrunutility/threadaffinity.cpp [926/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/state_propagator_data_gpu_impl_gpu.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/state_propagator_data_gpu_impl_gpu.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/state_propagator_data_gpu_impl_gpu.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdtypes/state_propagator_data_gpu_impl_gpu.cpp [927/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/warninp.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/warninp.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/warninp.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/warninp.cpp [928/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/xtcio.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/xtcio.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/xtcio.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/xtcio.cpp [929/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/writeps.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/writeps.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/writeps.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/writeps.cpp [930/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/shellfc.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrun/shellfc.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/shellfc.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/shellfc.cpp [931/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/mempool.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/mempool.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/mempool.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/mempool.cpp [932/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/position.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/position.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/position.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/position.cpp [933/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/centerofmass.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/centerofmass.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/centerofmass.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/centerofmass.cpp [934/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/xdr_serializer.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/xdr_serializer.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/xdr_serializer.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/xdr_serializer.cpp [935/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/pdbio.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/pdbio.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/pdbio.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/pdbio.cpp [936/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/trxio.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/trxio.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/trxio.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/trxio.cpp [937/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/selvalue.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/selvalue.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/selvalue.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/selvalue.cpp [938/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/tngio.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/tngio.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/tngio.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/tngio.cpp [939/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/selmethod.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/selmethod.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/selmethod.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/selmethod.cpp [940/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/poscalc.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/poscalc.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/poscalc.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/poscalc.cpp [941/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/xvgr.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/xvgr.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/xvgr.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/xvgr.cpp [942/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoptionbehavior.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoptionbehavior.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoptionbehavior.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/selectionoptionbehavior.cpp [943/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/scanner_internal.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/scanner_internal.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/scanner_internal.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/scanner_internal.cpp [944/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/evaluate.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/evaluate.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/evaluate.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/evaluate.cpp [945/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_distance.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_distance.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_distance.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/sm_distance.cpp [946/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/selection.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/selection.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/selection.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/selection.cpp [947/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_compare.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_compare.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_compare.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/sm_compare.cpp [948/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/tpi.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrun/tpi.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/tpi.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/tpi.cpp /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/tpi.cpp: In member function ‘std::pair gmx::TestParticleInsertion::performSingleInsertion(double, int64_t, bool, const gmx::RVec&, t_state*, gmx::MdrunScheduleWorkload*, gmx_wallcycle*, t_nrnb*)’: /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/tpi.cpp:497:85: note: parameter passing for argument of type ‘std::pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 497 | t_nrnb* nrnb) | ^ [949/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoptionmanager.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoptionmanager.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoptionmanager.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/selectionoptionmanager.cpp [950/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/selhelp.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/selhelp.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/selhelp.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/selhelp.cpp [951/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/nbsearch.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/nbsearch.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/nbsearch.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/nbsearch.cpp [952/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_position.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_position.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_position.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/sm_position.cpp [953/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_merge.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_merge.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_merge.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/sm_merge.cpp [954/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_insolidangle.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_insolidangle.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_insolidangle.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/sm_insolidangle.cpp [955/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_permute.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_permute.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_permute.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/sm_permute.cpp [956/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/selelem.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/selelem.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/selelem.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/selelem.cpp [957/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/readinp.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/readinp.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/readinp.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/readinp.cpp [958/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/minimize.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrun/minimize.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/minimize.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/minimize.cpp [959/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/md.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrun/md.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/md.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/md.cpp [960/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/indexutil.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/indexutil.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/indexutil.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/indexutil.cpp [961/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoption.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoption.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoption.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/selectionoption.cpp [962/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_same.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_same.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_same.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/sm_same.cpp [963/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fopenmp -MD -MT share/template/CMakeFiles/template.dir/template.cpp.o -MF share/template/CMakeFiles/template.dir/template.cpp.o.d -o share/template/CMakeFiles/template.dir/template.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/share/template/template.cpp [964/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_simple.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_simple.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_simple.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/sm_simple.cpp [965/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/symrec.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/symrec.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/symrec.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/symrec.cpp [966/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/parsetree.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/parsetree.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/parsetree.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/parsetree.cpp [967/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/params.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/params.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/params.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/params.cpp [968/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/selectioncollection.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/selectioncollection.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/selectioncollection.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/selectioncollection.cpp [969/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/compiler.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/compiler.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/compiler.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/compiler.cpp [970/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/checkpoint.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/checkpoint.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/checkpoint.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/checkpoint.cpp [971/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/runner.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrun/runner.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/runner.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/runner.cpp [972/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/tpxio.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/tpxio.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/tpxio.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/tpxio.cpp [973/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/matio.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/matio.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/matio.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/matio.cpp [974/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_keywords.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_keywords.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_keywords.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/sm_keywords.cpp [975/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/freeenergykernel.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/freeenergykernel.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/freeenergykernel.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/freeenergykernel.cpp [976/978] : && /usr/bin/cmake -E rm -f lib/libgromacs_mpich.a && /usr/bin/ar qc lib/libgromacs_mpich.a src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o src/gromacs/selection/CMakeFiles/scanner.dir/parser.cpp.o src/gromacs/selection/CMakeFiles/scanner.dir/scanner.cpp.o src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/accessors.cpp.o src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/action.transpose.cpp.o src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/enqueue.cpp.o src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/fft_binary_lookup.cpp.o src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.copy.cpp.o src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.stockham.cpp.o src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.transpose.cpp.o src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.transpose.gcn.cpp.o src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/lifetime.cpp.o src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/md5sum.cpp.o src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/plan.cpp.o src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/repo.cpp.o src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/stdafx.cpp.o src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/transform.cpp.o src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.CPU.cpp.o src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.GPU.cpp.o src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.extern.cpp.o src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/stdafx.cpp.o src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr.cpp.o src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr_array.cpp.o src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr_float.cpp.o src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr_stdio.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar_neuralnetworkcompute.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvaratoms.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abf.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abmd.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_alb.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram_reweight_amd.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_meta.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_opes.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_restraint.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_alchlambda.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_angles.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_apath.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_combination.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_coordnums.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_distances.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_gpath.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_neuralnetwork.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_protein.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_rotations.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_torchann.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_volmaps.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvardeps.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid_integrate.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarmodule.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparams.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparse.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_io.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_replicas.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_system.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_tcl.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_volmaps.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvars_memstream.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_bias.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_colvar.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvartypes.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarvalue.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/nr_jacobi.cpp.o src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/energyterm.cpp.o src/gromacs/fmm/CMakeFiles/fmm.dir/fmm_mdmodule.cpp.o src/gromacs/fmm/CMakeFiles/fmm.dir/fmm_mdpoptions.cpp.o src/gromacs/fmm/CMakeFiles/fmm.dir/fmm_mdpvalidator.cpp.o src/gromacs/fmm/CMakeFiles/fmm.dir/fmmforceproviderbuilder.cpp.o src/gromacs/fmm/CMakeFiles/fmm.dir/fmmoptions.cpp.o src/gromacs/fmm/CMakeFiles/fmm.dir/fmmforceprovider_stub.cpp.o src/gromacs/fileio/h5md/CMakeFiles/h5md.dir/h5md.cpp.o src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/binary_information.cpp.o src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/eigensolver.cpp.o src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/matrix.cpp.o src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/andersentemperaturecoupling.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/constraintelement.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/domdechelper.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/energydata.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/expandedensembleelement.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/firstorderpressurecoupling.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/forceelement.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/freeenergyperturbationdata.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/modularsimulator.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/mttk.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/nosehooverchains.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/pmeloadbalancehelper.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/propagator.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/pullelement.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/referencetemperaturemanager.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/signallers.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/simulatoralgorithm.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/topologyholder.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/velocityscalingtemperaturecoupling.cpp.o src/gromacs/options/CMakeFiles/options.dir/abstractoption.cpp.o src/gromacs/options/CMakeFiles/options.dir/abstractsection.cpp.o src/gromacs/options/CMakeFiles/options.dir/basicoptions.cpp.o src/gromacs/options/CMakeFiles/options.dir/behaviorcollection.cpp.o src/gromacs/options/CMakeFiles/options.dir/filenameoption.cpp.o src/gromacs/options/CMakeFiles/options.dir/filenameoptionmanager.cpp.o src/gromacs/options/CMakeFiles/options.dir/options.cpp.o src/gromacs/options/CMakeFiles/options.dir/optionsassigner.cpp.o src/gromacs/options/CMakeFiles/options.dir/optionsection.cpp.o src/gromacs/options/CMakeFiles/options.dir/optionsvisitor.cpp.o src/gromacs/options/CMakeFiles/options.dir/timeunitmanager.cpp.o src/gromacs/options/CMakeFiles/options.dir/treesupport.cpp.o src/gromacs/pulling/CMakeFiles/pulling.dir/output.cpp.o src/gromacs/pulling/CMakeFiles/pulling.dir/pull.cpp.o src/gromacs/pulling/CMakeFiles/pulling.dir/pull_rotation.cpp.o src/gromacs/pulling/CMakeFiles/pulling.dir/pullcoordexpressionparser.cpp.o src/gromacs/pulling/CMakeFiles/pulling.dir/pullutil.cpp.o src/gromacs/pulling/CMakeFiles/pulling.dir/transformationcoordinate.cpp.o src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/decidegpuusage.cpp.o src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/decidesimulationworkload.cpp.o src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/findallgputasks.cpp.o src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/reportgpuusage.cpp.o src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/resourcedivision.cpp.o src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/taskassignment.cpp.o src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/usergpuids.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/any.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/basenetwork.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/booltype.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/compare.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/coolstuff.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/cstringutil.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/datafilefinder.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/directoryenumerator.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/errorcodes.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/errorformat.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/exceptions.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/fatalerror.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/fileredirector.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/filestream.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/futil.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxassert.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxomp.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/ikeyvaluetreeerror.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/init.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/int64_to_int.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetree.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreemdpwriter.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreetransform.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/logger.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/loggerbuilder.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/message_string_collector.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/mpicomm.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/mpiinfo.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/niceheader.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/path.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/physicalnodecommunicator.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/pleasecite.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/programcontext.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/smalloc.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/strconvert.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/strdb.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/stringstream.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/stringutil.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/sysinfo.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/textreader.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/veccompare.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/vecdump.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/atomdata.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_setup.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_system.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/exclusionchecker.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/freeenergydispatch.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/freeenergykernel.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/grid.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/gridset.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernel_common.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kerneldispatch.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_gpu_ref.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_1x1.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_4x4.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_prune.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_geometry.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_setup.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist_simd_kernel.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist_tuning.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistparams.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistset.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistsets.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistwork.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairsearch.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/prunekerneldispatch.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/simd_energy_accumulator.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/simd_prune_kernel.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_gpu_buffer_ops_internal_ocl.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl_data_mgmt.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl_jit_support.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpwriter.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineinit.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodule.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodulemanager.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodulesettings.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineoptionsmodule.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/commandline/filenm.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/commandline/pargs.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/commandline/shellcompletions.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/commandline/viewit.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/atomdistribution.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/box.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/cellsizes.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/collect.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/computemultibodycutoffs.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/distribute.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlb.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/domainpaircomm.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_zones.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/dump.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/haloexchange.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/haloexchangesetup.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomset.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetdata.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetmanager.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/localtopology.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/localtopologychecker.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/makebondedlinks.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/mdsetup.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/nsgrid.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/partition.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/reversetopology.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/utility.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/gpuhaloexchange_impl.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/math/coordinatetransformation.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/math/densityfit.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/math/densityfittingforce.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/math/do_fit.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/math/exponentialmovingaverage.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/math/functions.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/math/gausstransform.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/math/invertmatrix.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/math/neldermead.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/math/nrjac.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/math/optimization.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/math/utilities.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/awh_history.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/checkpointdata.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/commrec.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/df_history.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/energyhistory.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/forcebuffers.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/group.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/iforceprovider.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/inputrec.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/interaction_const.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/md_enums.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/multipletimestepping.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/observableshistory.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/observablesreducer.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/state.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/threaded_force_buffer.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpformat.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helptopic.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpwritercontext.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/rstparser.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/boxutilities.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/com.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/mshift.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc_simd.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbcenums.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbcmethods.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/rmpbc.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/random/seed.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/random/tabulatednormaldistribution.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/restraint/manager.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/restraint/restraintmdmodule.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/serialization/inmemoryserializer.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/serialization/keyvaluetreeserializer.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/tables/cubicsplinetable.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/tables/forcetable.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/tables/quadraticsplinetable.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/tables/splineutil.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/timing/cyclecounter.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/timing/external_tracing.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/timing/wallcycle.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/timing/walltime_accounting.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/topology/atomprop.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/topology/atoms.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/topology/atomsbuilder.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/topology/block.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/topology/embedded_system_preprocessing.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/topology/exclusionblocks.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/topology/forcefieldparameters.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/topology/idef.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/topology/ifunc.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/topology/index.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/topology/invblock.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/topology/mtop_atomloops.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/topology/mtop_util.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/topology/residuetypes.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/topology/symtab.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/topology/topology.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/topology/topsort.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectory/energyframe.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectory/trajectoryframe.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/swap/swapcoords.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/essentialdynamics/edsam.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/imd/imd.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/imd/imdsocket.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mimic/communicator_stub.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mimic/utilities.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/anadih.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/angle_correction.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/binsearch.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/cluster_methods.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/cmat.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/dens_filter.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/dlist.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/eigio.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/fitahx.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_anaeig.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_analyze.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_angle.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_awh.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_bar.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_bundle.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_chi.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_cluster.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_clustsize.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_confrms.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_covar.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_current.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_density.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_densmap.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_densorder.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dielectric.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dipoles.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_disre.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dos.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dyecoupl.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_enemat.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_energy.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_filter.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_gyrate.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_h2order.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_hbond.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_helix.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_helixorient.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_hydorder.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_lie.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_make_edi.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_mdmat.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_mindist.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmeig.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmens.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmr.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmtraj.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_order.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_polystat.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_potential.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_principal.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rama.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rms.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rmsdist.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rmsf.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rotacf.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rotmat.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_saltbr.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sans.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_saxs.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sham.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sigeps.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sorient.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_spatial.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_spol.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_tcaf.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_traj.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_trjorder.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_vanhove.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_velacc.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_wham.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_wheel.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_xpm2ps.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/hxprops.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/nrama.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/nsfactor.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/powerspect.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/pp2shift.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/princ.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/sfactor.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/thermochemistry.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/add_par.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/calch.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/compute_io.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/convparm.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/editconf.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/fflibutil.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_ad.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_maxwell_velocities.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_vsite.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genconf.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genhydro.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genion.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genrestr.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gmxcpp.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_atomtype.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_bond_atomtype.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_nextnb.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/grompp.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/h_db.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/hackblock.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/hizzie.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/insert_molecules.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/makeexclusiondistances.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/massrepartitioning.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/nm2type.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2gmx.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2top.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pgutil.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readir.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readpull.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readrot.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/resall.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/solvate.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/specbond.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/ter_db.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/tomorse.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topdirs.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topio.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/toppush.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topshake.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/toputil.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/vsite_parm.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/x2top.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/xlate.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/autocorr.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/crosscorr.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/expfit.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/gmx_lmcurve.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/integrate.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/manyautocorrelation.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/polynomials.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/statistics/statistics.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/abstractdata.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/analysisdata.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/arraydata.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/dataframe.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datamodule.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datamodulemanager.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/dataproxy.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datastorage.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/average.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/displacement.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/frameaverager.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/histogram.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/lifetime.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/plot.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/coordinatefile.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/frameconverters/register.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadaptercontainer.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/outputselector.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setatoms.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setforces.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setprecision.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setstarttime.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/settimestep.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setvelocities.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/requirements.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/analysismodule.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/analysissettings.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/cmdlinerunner.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/angle.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/convert_trj.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/distance.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/dssp.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/extract_cluster.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/freevolume.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/gyrate.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/hbond.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/isotope.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/msd.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/pairdist.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/rdf.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/sasa.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering-debye-sans.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering-debye-saxs.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering-debye.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scatteringfactors.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/select.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/surfacearea.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/trajectory.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/runnercommon.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/topologyinformation.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/tools/check.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/tools/convert_tpr.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/tools/dump.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/tools/eneconv.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/tools/make_ndx.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/tools/mk_angndx.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/tools/pme_error.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/tools/report_methods.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/tools/trjcat.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/tools/trjconv.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/tools/tune_pme.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/conformation_utilities.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/network.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nrnb.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/boxdeformation.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/broadcaststructs.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calc_verletbuf.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calcmu.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calcvir.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/checkpointhandler.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constr.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constraint_gpu_helpers.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constraintrange.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/coupling.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/dispersioncorrection.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/ebin.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/enerdata_utils.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/energydrifttracker.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/energyoutput.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/expanded.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/expanded_internal.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/force.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/freeenergyparameters.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/gmx_omp_nthreads.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/lincs_constraint_group_sizes.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/md_support.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdatoms.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdgraph_gpu_impl.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/membed.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/resethandler.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rf_util.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/settle.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/shake.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sighandler.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sim_util.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/simulationsignal.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/splitter.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stat.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stophandler.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/tgroup.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update_vv.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroups.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroupscog.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vcm.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vsite.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wholemoleculetransform.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/gpuforcereduction_impl_stubs.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update_constrain_gpu_impl_stubs.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/electricfield.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/awh.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/bias.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biasgrid.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biasparams.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biassharing.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biasstate.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biaswriter.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/coordstate.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/correlationgrid.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/correlationhistory.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/correlationtensor.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/histogramsize.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/pointstate.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/read_params.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfitting.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingamplitudelookup.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingforceprovider.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingoptions.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingoutputprovider.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingparameters.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmminputgenerator.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmforceproviderstate.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmoptions.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmm.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmforceprovider_stub.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarsMDModule.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarsoptions.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarspreprocessor.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarssimulationsparameters.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarsforceprovider.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarproxygromacs.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/plumed/plumedforceprovider.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/plumed/plumedOptions.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/plumed/plumedMDModule.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/nnpot/binary_information.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/nnpot/nnpotoptions.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/nnpot/nnpot.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/nnpot/nnpotforceprovider_stub.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/bonded.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/disre.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/listed_forces_gpu_impl.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/listed_forces.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/listed_internal.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/manage_threading.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/orires.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/pairs.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/position_restraints.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/restcbt.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_gpu_data_mgmt.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_gpu_buffer_ops.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/calculate_spline_moduli.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald_utils.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/long_range_correction.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gather.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_grid.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_load_balancing.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_only.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_pp.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_redistribute.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_solve.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_spline_work.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_spread.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_program.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_program_impl_ocl.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_ocl_stubs.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_pp_comm_gpu_impl.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_coordinate_receiver_gpu_impl.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_force_sender_gpu_impl.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_internal.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_timings.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fft/binary_information.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fft/fft.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fft/fft5d.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fft/parallel_3dfft.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fft/fft_fftw3.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fft/gpu_3dfft_ocl.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fft/gpu_3dfft_impl.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fft/gpu_3dfft.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/binary_information.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/clfftinitializer.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/device_stream_manager.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpueventsynchronizer_helpers.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/hostallocator.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/nvshmem_manager.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/device_context_ocl.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/device_stream_ocl.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils_impl.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/pmalloc.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/ocl_compiler.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/ocl_caching.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/oclutils.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/hardware/cpuinfo.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/hardware/detecthardware.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/hardware/device_management_common.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/hardware/hardwaretopology.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/hardware/printhardware.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/hardware/identifyavx512fmaunits.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/hardware/simd_support.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/hardware/device_management_ocl.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/binary_information.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/legacymdrunoptions.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/legacysimulator.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/md.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/mdmodules.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/membedholder.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/mimic.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/minimize.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/replicaexchange.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/rerun.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/runner.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/shellfc.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationcontext.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationinput.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationinputhandle.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulatorbuilder.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/tpi.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/freeenergy.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/handlerestart.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/logging.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/mdmodulesnotifiers.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/multisim.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/plainpairlistranges.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/print_validation.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/printtime.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/threadaffinity.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/state_propagator_data_gpu_impl_gpu.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion-gen.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/checkpoint.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/confio.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/enxio.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/espio.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/filetypes.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/g96io.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio_xdr.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/groio.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/libxdrf.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/matio.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/md5.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/mrcdensitymap.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/mrcdensitymapheader.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/mrcserializer.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/mtxio.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/oenv.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/pdbio.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/readinp.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/timecontrol.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/tngio.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/tpxio.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/trrio.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/trxio.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/warninp.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/writeps.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/xdr_serializer.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/xdrd.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/xtcio.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/xvgr.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/centerofmass.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/compiler.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/evaluate.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/indexutil.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/mempool.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/nbsearch.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/params.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/parsetree.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/poscalc.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/position.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/scanner_internal.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/selection.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/selectioncollection.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoption.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoptionbehavior.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoptionmanager.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/selelem.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/selhelp.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/selmethod.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/selvalue.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_compare.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_distance.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_insolidangle.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_keywords.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_merge.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_permute.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_position.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_same.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_simple.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/symrec.cpp.o && /usr/bin/ranlib lib/libgromacs_mpich.a && : [977/978] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=share/template/CMakeFiles/template.dir/link.d share/template/CMakeFiles/template.dir/template.cpp.o -o bin/template -Wl,-rpath,/usr/lib64/mpich/lib lib/libgromacs_mpich.a /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl && : [978/978] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=src/programs/CMakeFiles/gmx.dir/link.d src/programs/CMakeFiles/gmx_objlib.dir/gmx.cpp.o src/programs/CMakeFiles/gmx_objlib.dir/legacymodules.cpp.o src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o bin/gmx_mpich -Wl,-rpath,/usr/lib64/mpich/lib: lib/libgromacs_mpich.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl && : In member function ‘performSingleInsertion’: lto1: note: parameter passing for argument of type ‘struct pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 + popd ~/build/BUILD/gromacs-2026.3-build/gromacs-2026.3 + test -n mpich + module unload mpi/mpich-aarch64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw unload mpi/mpich-aarch64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh unload mpi/mpich-aarch64 + eval $'unset LD_LIBRARY_PATH;\nunset MPI_COMPILER;\nMANPATH=\'/usr/share/man:\'; export MANPATH;\nunset MPI_INCLUDE;\nunset MPI_MAN;\nunset MPI_PYTHON_SITEARCH;\nunset _LMFILES_;\nunset LOADEDMODULES;\nunset CMAKE_PREFIX_PATH;\nPKG_CONFIG_PATH=\':/usr/lib64/pkgconfig:/usr/share/pkgconfig\'; export PKG_CONFIG_PATH;\nunset MPI_PYTHON3_SITEARCH;\nunset MPI_FORTRAN_MOD_DIR;\nunset MPI_HOME;\nunset __MODULES_LMCONFLICT;\n__MODULES_SHARE_MANPATH=\':1\'; export __MODULES_SHARE_MANPATH;\nunset MPI_SYSCONFIG;\nunset MPI_SUFFIX;\n__MODULES_SHARE_PKG_CONFIG_PATH=\':1\'; export __MODULES_SHARE_PKG_CONFIG_PATH;\nunset MPI_PYTHON2_SITEARCH;\nunset MPI_LIB;\nPATH=\'/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin\'; export PATH;\nunset MPI_BIN;\ntest 0;' ++ unset LD_LIBRARY_PATH ++ unset MPI_COMPILER ++ MANPATH=/usr/share/man: ++ export MANPATH ++ unset MPI_INCLUDE ++ unset MPI_MAN ++ unset MPI_PYTHON_SITEARCH ++ unset _LMFILES_ ++ unset LOADEDMODULES ++ unset CMAKE_PREFIX_PATH ++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_FORTRAN_MOD_DIR ++ unset MPI_HOME ++ unset __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:1 ++ export __MODULES_SHARE_MANPATH ++ unset MPI_SYSCONFIG ++ unset MPI_SUFFIX ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ unset MPI_PYTHON2_SITEARCH ++ unset MPI_LIB ++ PATH=/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin ++ export PATH ++ unset MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + for mpi in '' mpich openmpi + test -n openmpi + module load mpi/openmpi-aarch64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw load mpi/openmpi-aarch64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh load mpi/openmpi-aarch64 + eval $'MPI_COMPILER=\'openmpi-aarch64\'; export MPI_COMPILER;\nLD_LIBRARY_PATH=\'/usr/lib64/openmpi/lib\'; export LD_LIBRARY_PATH;\nMPI_MAN=\'/usr/share/man/openmpi-aarch64\'; export MPI_MAN;\nMANPATH=\'/usr/share/man/openmpi-aarch64:/usr/share/man:\'; export MANPATH;\nMPI_INCLUDE=\'/usr/include/openmpi-aarch64\'; export MPI_INCLUDE;\n_LMFILES_=\'/usr/share/modulefiles/mpi/openmpi-aarch64\'; export _LMFILES_;\nLOADEDMODULES=\'mpi/openmpi-aarch64\'; export LOADEDMODULES;\nCMAKE_PREFIX_PATH=\'/usr/lib64/openmpi\'; export CMAKE_PREFIX_PATH;\nPKG_CONFIG_PATH=\'/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig\'; export PKG_CONFIG_PATH;\nMPI_PYTHON3_SITEARCH=\'/usr/lib64/python3.15/site-packages/openmpi\'; export MPI_PYTHON3_SITEARCH;\nMPI_HOME=\'/usr/lib64/openmpi\'; export MPI_HOME;\nMPI_FORTRAN_MOD_DIR=\'/usr/lib64/gfortran/modules/openmpi\'; export MPI_FORTRAN_MOD_DIR;\n__MODULES_LMALTNAME=\'mpi/openmpi-aarch64&as|mpi/default&as|mpi/latest\'; export __MODULES_LMALTNAME;\n__MODULES_LMCONFLICT=\'mpi/openmpi-aarch64&mpi\'; export __MODULES_LMCONFLICT;\n__MODULES_SHARE_MANPATH=\':2\'; export __MODULES_SHARE_MANPATH;\nMPI_SUFFIX=\'_openmpi\'; export MPI_SUFFIX;\nMPI_SYSCONFIG=\'/etc/openmpi-aarch64\'; export MPI_SYSCONFIG;\n__MODULES_SHARE_PKG_CONFIG_PATH=\':1\'; export __MODULES_SHARE_PKG_CONFIG_PATH;\nMPI_LIB=\'/usr/lib64/openmpi/lib\'; export MPI_LIB;\nPATH=\'/usr/lib64/openmpi/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin\'; export PATH;\nMPI_BIN=\'/usr/lib64/openmpi/bin\'; export MPI_BIN;\ntest 0;' ++ MPI_COMPILER=openmpi-aarch64 ++ export MPI_COMPILER ++ LD_LIBRARY_PATH=/usr/lib64/openmpi/lib ++ export LD_LIBRARY_PATH ++ MPI_MAN=/usr/share/man/openmpi-aarch64 ++ export MPI_MAN ++ MANPATH=/usr/share/man/openmpi-aarch64:/usr/share/man: ++ export MANPATH ++ MPI_INCLUDE=/usr/include/openmpi-aarch64 ++ export MPI_INCLUDE ++ _LMFILES_=/usr/share/modulefiles/mpi/openmpi-aarch64 ++ export _LMFILES_ ++ LOADEDMODULES=mpi/openmpi-aarch64 ++ export LOADEDMODULES ++ CMAKE_PREFIX_PATH=/usr/lib64/openmpi ++ export CMAKE_PREFIX_PATH ++ PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.15/site-packages/openmpi ++ export MPI_PYTHON3_SITEARCH ++ MPI_HOME=/usr/lib64/openmpi ++ export MPI_HOME ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi ++ export MPI_FORTRAN_MOD_DIR ++ __MODULES_LMALTNAME='mpi/openmpi-aarch64&as|mpi/default&as|mpi/latest' ++ export __MODULES_LMALTNAME ++ __MODULES_LMCONFLICT='mpi/openmpi-aarch64&mpi' ++ export __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:2 ++ export __MODULES_SHARE_MANPATH ++ MPI_SUFFIX=_openmpi ++ export MPI_SUFFIX ++ MPI_SYSCONFIG=/etc/openmpi-aarch64 ++ export MPI_SYSCONFIG ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ MPI_LIB=/usr/lib64/openmpi/lib ++ export MPI_LIB ++ PATH=/usr/lib64/openmpi/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin ++ export PATH ++ MPI_BIN=/usr/lib64/openmpi/bin ++ export MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + mkdir -p openmpi + pushd openmpi ~/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi ~/build/BUILD/gromacs-2026.3-build/gromacs-2026.3 + test -z openmpi + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX ++ test -n openmpi ++ echo -DGMX_MPI:BOOL=ON -DGMX_THREAD_MPI:BOOL=OFF -DGMX_DEFAULT_SUFFIX:BOOL=OFF -DBUILD_SHARED_LIBS:BOOL=OFF -DGMX_USE_HEFFTE=OFF -DGMX_BINARY_SUFFIX=_openmpi -DGMX_LIBS_SUFFIX=_openmpi -DCMAKE_INSTALL_BINDIR=/usr/lib64/openmpi/bin -DCMAKE_INSTALL_LIBDIR=/usr/lib64/openmpi/lib ++ test -z openmpi ++ test -n '' ++ echo -DGMX_GPU=OpenCL + /usr/bin/cmake -S .. -B redhat-linux-build -G Ninja -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DCMAKE_INSTALL_FULL_SBINDIR:PATH=/usr/bin -DCMAKE_INSTALL_SBINDIR:PATH=bin -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -DBUILD_TESTING:BOOL=ON -DCMAKE_SKIP_INSTALL_RPATH=ON -DGMX_BLAS_USER=flexiblas -DGMX_BUILD_UNITTESTS:BOOL=ON -DGMX_USE_LMFIT=EXTERNAL -DGMX_EXTERNAL_TNG:BOOL=ON -DGMX_EXTERNAL_TINYXML2:BOOL=OFF -DGMX_USE_MUPARSER=EXTERNAL -DGMX_LAPACK_USER=flexiblas -DGMX_USE_RDTSCP=OFF -DGMX_INSTALL_LEGACY_API=ON -DGMX_VERSION_STRING_OF_FORK=Fedora46 -DGMX_SIMD=ARM_NEON_ASIMD -DGMX_MPI:BOOL=ON -DGMX_THREAD_MPI:BOOL=OFF -DGMX_DEFAULT_SUFFIX:BOOL=OFF -DBUILD_SHARED_LIBS:BOOL=OFF -DGMX_USE_HEFFTE=OFF -DGMX_BINARY_SUFFIX=_openmpi -DGMX_LIBS_SUFFIX=_openmpi -DCMAKE_INSTALL_BINDIR=/usr/lib64/openmpi/bin -DCMAKE_INSTALL_LIBDIR=/usr/lib64/openmpi/lib -DGMX_GPU=OpenCL -- The C compiler identification is GNU 16.2.1 -- The CXX compiler identification is GNU 16.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Could NOT find Python3 (missing: Python3_INCLUDE_DIRS Python3_LIBRARIES Development Development.Module Development.Embed) (found suitable version "3.15.0", minimum required is "3.9") -- Selected GPU FFT library - clFFT -- Found OpenMP_CXX: -fopenmp (found version "5.2") -- Found OpenMP: TRUE (found version "5.2") found components: CXX -- Performing Test CFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS -- Performing Test CFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS - Success -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS -- Performing Test CXXFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Looking for include file unistd.h -- Looking for include file unistd.h - found -- Looking for include file pwd.h -- Looking for include file pwd.h - found -- Looking for include file dirent.h -- Looking for include file dirent.h - found -- Looking for include file time.h -- Looking for include file time.h - found -- Looking for include file sys/time.h -- Looking for include file sys/time.h - found -- Looking for include file io.h -- Looking for include file io.h - not found -- Looking for include file sched.h -- Looking for include file sched.h - found -- Looking for include file xmmintrin.h -- Looking for include file xmmintrin.h - not found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for sysconf -- Looking for sysconf - found -- Looking for nice -- Looking for nice - found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sigaction -- Looking for sigaction - found -- Performing Test HAVE_BUILTIN_CLZ -- Performing Test HAVE_BUILTIN_CLZ - Success -- Performing Test HAVE_BUILTIN_CLZLL -- Performing Test HAVE_BUILTIN_CLZLL - Success -- Looking for clock_gettime in rt -- Looking for clock_gettime in rt - found -- Looking for feenableexcept in m -- Looking for feenableexcept in m - found -- Looking for fedisableexcept in m -- Looking for fedisableexcept in m - found -- Checking for sched.h GNU affinity API -- Performing Test sched_affinity_compile -- Performing Test sched_affinity_compile - Success -- Looking for include file mm_malloc.h -- Looking for include file mm_malloc.h - not found -- Looking for include file malloc.h -- Looking for include file malloc.h - found -- Checking for _mm_malloc() -- Checking for _mm_malloc() - not supported -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - not found -- Found MPI_CXX: /usr/lib64/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") found components: CXX -- GROMACS library will use OpenMPI 5.0.11 -- Performing Test HAS_WARNING_NO_OLD_STYLE_CAST -- Performing Test HAS_WARNING_NO_OLD_STYLE_CAST - Success -- Performing Test HAS_WARNING_NO_CAST_QUAL -- Performing Test HAS_WARNING_NO_CAST_QUAL - Success -- Performing Test HAS_WARNING_NO_SUGGEST_OVERRIDE -- Performing Test HAS_WARNING_NO_SUGGEST_OVERRIDE - Success -- Performing Test HAS_WARNING_NO_SUGGEST_DESTRUCTOR_OVERRIDE -- Performing Test HAS_WARNING_NO_SUGGEST_DESTRUCTOR_OVERRIDE - Success -- Performing Test HAS_WARNING_NO_ZERO_AS_NULL_POINTER_CONSTANT -- Performing Test HAS_WARNING_NO_ZERO_AS_NULL_POINTER_CONSTANT - Success -- Using manually set binary suffix: "_openmpi" -- Using manually set library suffix: "_openmpi" -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Looking for C++ include pthread.h -- Looking for C++ include pthread.h - found -- Performing Test TEST_ATOMICS -- Performing Test TEST_ATOMICS - Success -- Atomic operations found -- Performing Test PTHREAD_SETAFFINITY -- Performing Test PTHREAD_SETAFFINITY - Success -- Performing Test C_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS -- Performing Test C_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS - Success -- Performing Test CXX_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS -- Performing Test CXX_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS - Success -- Enabling ARM (AArch64) NEON Advanced SIMD instructions using CXX flags: -- Performing Test _callconv___vectorcall -- Performing Test _callconv___vectorcall - Failed -- Performing Test _callconv___regcall -- Performing Test _callconv___regcall - Failed -- Performing Test _callconv_ -- Performing Test _callconv_ - Success -- GPU support with OpenCL is deprecated. It is still fully supported (and recommended for Apple GPUs). Please use CUDA for running on NVIDIA GPUs and SYCL for running on Intel GPUs, and HIP or SYCL on AMD GPUs. -- Looking for include file OpenCL/cl.h -- Looking for include file OpenCL/cl.h - not found -- Looking for CL_VERSION_3_0 -- Looking for CL_VERSION_3_0 - found -- Found OpenCL: /usr/lib64/libOpenCL.so (found version "3.0") -- Torch not found. Neural network potential support will be disabled. -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - not supported -- Detected build CPU vendor - ARM -- Detected build CPU brand - 0xd40 -- Detected build CPU family - 8 -- Detected build CPU model - 1 -- Detected build CPU stepping - 1 -- Detected build CPU features - neon neon_asimd sve -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present -- Checking for fseeko/ftello -- Checking for fseeko/ftello - present -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for pipe support -- Checking for system XDR support -- Checking for system XDR support - not present -- Checking for module 'fftw3f' -- Found fftw3f, version 3.3.10 -- Looking for fftwf_plan_many_dft in /usr/lib64/libfftw3f.so -- Looking for fftwf_plan_many_dft in /usr/lib64/libfftw3f.so - found -- Looking for fftwf_plan_many_dft_r2c in /usr/lib64/libfftw3f.so -- Looking for fftwf_plan_many_dft_r2c in /usr/lib64/libfftw3f.so - found -- Looking for fftwf_plan_many_dft_c2r in /usr/lib64/libfftw3f.so -- Looking for fftwf_plan_many_dft_c2r in /usr/lib64/libfftw3f.so - found -- Looking for fftwf_have_simd_sse in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_sse in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_sse in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_sse in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_sse2 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_sse2 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_sse2 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_sse2 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx2 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx2 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx2_128 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx2_128 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx512 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx512 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx_128_fma in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx_128_fma in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx_512 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx_512 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_kcvi in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_kcvi in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_altivec in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_altivec in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_neon in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_neon in /usr/lib64/libfftw3f.so - found -- Using external FFT library - FFTW3 -- Checking that user BLAS library flexiblas works -- Looking for dgemm_ -- Looking for dgemm_ - found -- Checking that user LAPACK library flexiblas works -- Looking for cheev_ -- Looking for cheev_ - found -- No image conversion possible without ImageMagick -- Performing Test HAVE_NO_DEPRECATED_COPY -- Performing Test HAVE_NO_DEPRECATED_COPY - Success -- Looking for open_memstream -- Looking for open_memstream - found -- Performing Test HAS_WARNING_EVERYTHING -- Performing Test HAS_WARNING_EVERYTHING - Failed -- Looking for dlopen -- Looking for dlopen - found -- Performing Test HAS_NO_STRINGOP_TRUNCATION -- Performing Test HAS_NO_STRINGOP_TRUNCATION - Success -- Could NOT find HDF5 (missing: HDF5_LIBRARIES HDF5_INCLUDE_DIRS C) (Required is at least version "1.10.7") -- Performing Test HAS_WARNING_NO_CAST_FUNCTION_TYPE_STRICT -- Performing Test HAS_WARNING_NO_CAST_FUNCTION_TYPE_STRICT - Success -- Performing Test HAS_NO_UNUSED -- Performing Test HAS_NO_UNUSED - Success -- Performing Test HAS_NO_UNUSED_PARAMETER -- Performing Test HAS_NO_UNUSED_PARAMETER - Success -- Performing Test HAS_NO_MISSING_DECLARATIONS -- Performing Test HAS_NO_MISSING_DECLARATIONS - Success -- Performing Test HAS_NO_NULL_CONVERSIONS -- Performing Test HAS_NO_NULL_CONVERSIONS - Success -- Could NOT find clFFT (missing: clFFT_INCLUDE_DIR clFFT_LIBRARY) -- Performing Test LMFIT_LINKS_OK -- Performing Test LMFIT_LINKS_OK - Success -- Found Lmfit: /usr/include (found suitable version "11.0.0", minimum required is "7.0") -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success -- Performing Test COMPILER_HAS_DEPRECATED_ATTR -- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success -- Could NOT find Sphinx (missing: SPHINX_EXECUTABLE pygments) (Required is at least version "4.0.0") -- Could NOT find LATEX (missing: LATEX_COMPILER) -- Configuring done (20.2s) -- Generating done (0.5s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_Fortran_FLAGS_RELEASE CMAKE_INSTALL_DO_STRIP CMAKE_VERBOSE_MAKEFILE INCLUDE_INSTALL_DIR LIB_INSTALL_DIR LIB_SUFFIX SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build + /usr/bin/cmake --build redhat-linux-build -j32 --verbose Change Dir: '/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build' Run Build Command(s): /usr/bin/ninja-build -v -j 32 [1/978] cd /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3.15 -D PROJECT_VERSION=2026.3-Fedora46 -D PROJECT_SOURCE_DIR=/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3 -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Fedora46 -P /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/cmake/gmxGenerateVersionInfoWithoutGit.cmake [2/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o -MF src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o.d -o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/src/atomic.cpp [3/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -MD -MT src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr_float.cpp.o -MF src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr_float.cpp.o.d -o src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr_float.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/rpc_xdr/xdr_float.cpp /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/rpc_xdr/xdr_float.cpp: In function ‘bool_t xdr_double(XDR*, double*)’: /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/rpc_xdr/xdr_float.cpp:223:17: warning: unused variable ‘ip’ [-Wunused-variable] 223 | int* ip; | ^~ /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/rpc_xdr/xdr_float.cpp:224:17: warning: unused variable ‘tmp’ [-Wunused-variable] 224 | int32_t tmp[2]; | ^~~ [4/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -MF src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o.d -o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/src/tmpi_malloc.cpp [5/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -MD -MT src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr_array.cpp.o -MF src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr_array.cpp.o.d -o src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr_array.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/rpc_xdr/xdr_array.cpp [6/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -MD -MT src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr_stdio.cpp.o -MF src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr_stdio.cpp.o.d -o src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr_stdio.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/rpc_xdr/xdr_stdio.cpp [7/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o -MF src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o.d -o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/src/errhandler.cpp [8/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o -MF src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o.d -o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/src/lock.cpp [9/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -MD -MT src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr.cpp.o -MF src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr.cpp.o.d -o src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/rpc_xdr/xdr.cpp [10/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o -MF src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o.d -o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/src/pthreads.cpp [11/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_torchann.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_torchann.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_torchann.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarcomp_torchann.cpp [12/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_alchlambda.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_alchlambda.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_alchlambda.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarcomp_alchlambda.cpp [13/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_volmaps.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_volmaps.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_volmaps.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarcomp_volmaps.cpp [14/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abmd.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abmd.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abmd.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarbias_abmd.cpp [15/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparams.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparams.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparams.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarparams.cpp [16/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_angles.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_angles.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_angles.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarcomp_angles.cpp [17/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_replicas.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_replicas.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_replicas.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarproxy_replicas.cpp [18/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_volmaps.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_volmaps.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_volmaps.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarproxy_volmaps.cpp [19/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_combination.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_combination.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_combination.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarcomp_combination.cpp [20/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_system.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_system.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_system.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarproxy_system.cpp [21/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_rotations.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_rotations.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_rotations.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarcomp_rotations.cpp [22/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_alb.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_alb.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_alb.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarbias_alb.cpp [23/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_tcl.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_tcl.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_tcl.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarproxy_tcl.cpp [24/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar_neuralnetworkcompute.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar_neuralnetworkcompute.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar_neuralnetworkcompute.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvar_neuralnetworkcompute.cpp [25/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvars_memstream.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvars_memstream.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvars_memstream.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvars_memstream.cpp [26/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvardeps.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvardeps.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvardeps.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvardeps.cpp [27/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarbias_histogram.cpp [28/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_neuralnetwork.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_neuralnetwork.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_neuralnetwork.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarcomp_neuralnetwork.cpp [29/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid_integrate.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid_integrate.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid_integrate.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvargrid_integrate.cpp [30/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_protein.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_protein.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_protein.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarcomp_protein.cpp [31/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram_reweight_amd.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram_reweight_amd.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram_reweight_amd.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarbias_histogram_reweight_amd.cpp [32/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/nr_jacobi.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/nr_jacobi.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/nr_jacobi.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/nr_jacobi.cpp [33/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_coordnums.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_coordnums.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_coordnums.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarcomp_coordnums.cpp [34/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -DGMX_DESCRIBE_BLAS="External - user-supplied" -DGMX_DESCRIBE_LAPACK="External - user-supplied" -DGMX_FFT_MKL=0 -MD -MT src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/binary_information.cpp.o -MF src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/binary_information.cpp.o.d -o src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/binary_information.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/binary_information.cpp [35/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o -MF src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o.d -o src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/sparsematrix.cpp [36/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarproxy.cpp [37/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/fmm/CMakeFiles/fmm.dir/fmmforceprovider_stub.cpp.o -MF src/gromacs/fmm/CMakeFiles/fmm.dir/fmmforceprovider_stub.cpp.o.d -o src/gromacs/fmm/CMakeFiles/fmm.dir/fmmforceprovider_stub.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fmm/fmmforceprovider_stub.cpp [38/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_io.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_io.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_io.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarproxy_io.cpp [39/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_bias.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_bias.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_bias.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarscript_commands_bias.cpp [40/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/eigensolver.cpp.o -MF src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/eigensolver.cpp.o.d -o src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/eigensolver.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/eigensolver.cpp [41/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarcomp.cpp [42/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/matrix.cpp.o -MF src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/matrix.cpp.o.d -o src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/matrix.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/matrix.cpp [43/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/options/CMakeFiles/options.dir/abstractsection.cpp.o -MF src/gromacs/options/CMakeFiles/options.dir/abstractsection.cpp.o.d -o src/gromacs/options/CMakeFiles/options.dir/abstractsection.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/options/abstractsection.cpp [44/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/options/CMakeFiles/options.dir/behaviorcollection.cpp.o -MF src/gromacs/options/CMakeFiles/options.dir/behaviorcollection.cpp.o.d -o src/gromacs/options/CMakeFiles/options.dir/behaviorcollection.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/options/behaviorcollection.cpp [45/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/fmm/CMakeFiles/fmm.dir/fmm_mdpvalidator.cpp.o -MF src/gromacs/fmm/CMakeFiles/fmm.dir/fmm_mdpvalidator.cpp.o.d -o src/gromacs/fmm/CMakeFiles/fmm.dir/fmm_mdpvalidator.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fmm/fmm_mdpvalidator.cpp [46/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarscript_commands.cpp [47/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/fmm/CMakeFiles/fmm.dir/fmmforceproviderbuilder.cpp.o -MF src/gromacs/fmm/CMakeFiles/fmm.dir/fmmforceproviderbuilder.cpp.o.d -o src/gromacs/fmm/CMakeFiles/fmm.dir/fmmforceproviderbuilder.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fmm/fmmforceproviderbuilder.cpp [48/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_colvar.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_colvar.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_colvar.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarscript_commands_colvar.cpp [49/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/options/CMakeFiles/options.dir/optionsection.cpp.o -MF src/gromacs/options/CMakeFiles/options.dir/optionsection.cpp.o.d -o src/gromacs/options/CMakeFiles/options.dir/optionsection.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/options/optionsection.cpp [50/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/fmm/CMakeFiles/fmm.dir/fmm_mdmodule.cpp.o -MF src/gromacs/fmm/CMakeFiles/fmm.dir/fmm_mdmodule.cpp.o.d -o src/gromacs/fmm/CMakeFiles/fmm.dir/fmm_mdmodule.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fmm/fmm_mdmodule.cpp [51/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_apath.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_apath.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_apath.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarcomp_apath.cpp [52/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_restraint.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_restraint.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_restraint.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarbias_restraint.cpp [53/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/options/CMakeFiles/options.dir/optionsvisitor.cpp.o -MF src/gromacs/options/CMakeFiles/options.dir/optionsvisitor.cpp.o.d -o src/gromacs/options/CMakeFiles/options.dir/optionsvisitor.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/options/optionsvisitor.cpp [54/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/fmm/CMakeFiles/fmm.dir/fmm_mdpoptions.cpp.o -MF src/gromacs/fmm/CMakeFiles/fmm.dir/fmm_mdpoptions.cpp.o.d -o src/gromacs/fmm/CMakeFiles/fmm.dir/fmm_mdpoptions.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fmm/fmm_mdpoptions.cpp [55/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_distances.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_distances.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_distances.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarcomp_distances.cpp [56/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarbias.cpp [57/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/options/CMakeFiles/options.dir/optionsassigner.cpp.o -MF src/gromacs/options/CMakeFiles/options.dir/optionsassigner.cpp.o.d -o src/gromacs/options/CMakeFiles/options.dir/optionsassigner.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/options/optionsassigner.cpp [58/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvaratoms.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvaratoms.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvaratoms.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvaratoms.cpp [59/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/options/CMakeFiles/options.dir/filenameoptionmanager.cpp.o -MF src/gromacs/options/CMakeFiles/options.dir/filenameoptionmanager.cpp.o.d -o src/gromacs/options/CMakeFiles/options.dir/filenameoptionmanager.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/options/filenameoptionmanager.cpp [60/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/options/CMakeFiles/options.dir/timeunitmanager.cpp.o -MF src/gromacs/options/CMakeFiles/options.dir/timeunitmanager.cpp.o.d -o src/gromacs/options/CMakeFiles/options.dir/timeunitmanager.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/options/timeunitmanager.cpp [61/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarvalue.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarvalue.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarvalue.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarvalue.cpp [62/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvartypes.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvartypes.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvartypes.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvartypes.cpp [63/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/reportgpuusage.cpp.o -MF src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/reportgpuusage.cpp.o.d -o src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/reportgpuusage.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/reportgpuusage.cpp [64/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/options/CMakeFiles/options.dir/options.cpp.o -MF src/gromacs/options/CMakeFiles/options.dir/options.cpp.o.d -o src/gromacs/options/CMakeFiles/options.dir/options.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/options/options.cpp [65/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/findallgputasks.cpp.o -MF src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/findallgputasks.cpp.o.d -o src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/findallgputasks.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/findallgputasks.cpp [66/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/decidesimulationworkload.cpp.o -MF src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/decidesimulationworkload.cpp.o.d -o src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/decidesimulationworkload.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/decidesimulationworkload.cpp [67/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o -MF src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o.d -o src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/gmx_arpack.cpp [68/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/options/CMakeFiles/options.dir/abstractoption.cpp.o -MF src/gromacs/options/CMakeFiles/options.dir/abstractoption.cpp.o.d -o src/gromacs/options/CMakeFiles/options.dir/abstractoption.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/options/abstractoption.cpp [69/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/fmm/CMakeFiles/fmm.dir/fmmoptions.cpp.o -MF src/gromacs/fmm/CMakeFiles/fmm.dir/fmmoptions.cpp.o.d -o src/gromacs/fmm/CMakeFiles/fmm.dir/fmmoptions.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fmm/fmmoptions.cpp [70/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvargrid.cpp [71/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/usergpuids.cpp.o -MF src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/usergpuids.cpp.o.d -o src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/usergpuids.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/usergpuids.cpp [72/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_gpath.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_gpath.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_gpath.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarcomp_gpath.cpp [73/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/pullcoordexpressionparser.cpp.o -MF src/gromacs/pulling/CMakeFiles/pulling.dir/pullcoordexpressionparser.cpp.o.d -o src/gromacs/pulling/CMakeFiles/pulling.dir/pullcoordexpressionparser.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/pullcoordexpressionparser.cpp [74/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/compositesimulatorelement.cpp [75/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/transformationcoordinate.cpp.o -MF src/gromacs/pulling/CMakeFiles/pulling.dir/transformationcoordinate.cpp.o.d -o src/gromacs/pulling/CMakeFiles/pulling.dir/transformationcoordinate.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/transformationcoordinate.cpp [76/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/resourcedivision.cpp.o -MF src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/resourcedivision.cpp.o.d -o src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/resourcedivision.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/resourcedivision.cpp [77/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarscript.cpp [78/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/decidegpuusage.cpp.o -MF src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/decidegpuusage.cpp.o.d -o src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/decidegpuusage.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/decidegpuusage.cpp [79/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparse.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparse.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparse.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarparse.cpp [80/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/taskassignment.cpp.o -MF src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/taskassignment.cpp.o.d -o src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/taskassignment.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/taskassignment.cpp [81/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/options/CMakeFiles/options.dir/filenameoption.cpp.o -MF src/gromacs/options/CMakeFiles/options.dir/filenameoption.cpp.o.d -o src/gromacs/options/CMakeFiles/options.dir/filenameoption.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/options/filenameoption.cpp [82/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/options/CMakeFiles/options.dir/treesupport.cpp.o -MF src/gromacs/options/CMakeFiles/options.dir/treesupport.cpp.o.d -o src/gromacs/options/CMakeFiles/options.dir/treesupport.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/options/treesupport.cpp [83/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/domdechelper.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/domdechelper.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/domdechelper.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/domdechelper.cpp [84/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/output.cpp.o -MF src/gromacs/pulling/CMakeFiles/pulling.dir/output.cpp.o.d -o src/gromacs/pulling/CMakeFiles/pulling.dir/output.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/output.cpp [85/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/checkpointhelper.cpp [86/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/pullutil.cpp.o -MF src/gromacs/pulling/CMakeFiles/pulling.dir/pullutil.cpp.o.d -o src/gromacs/pulling/CMakeFiles/pulling.dir/pullutil.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/pullutil.cpp [87/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/referencetemperaturemanager.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/referencetemperaturemanager.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/referencetemperaturemanager.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/referencetemperaturemanager.cpp [88/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abf.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abf.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abf.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarbias_abf.cpp [89/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/pmeloadbalancehelper.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/pmeloadbalancehelper.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/pmeloadbalancehelper.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/pmeloadbalancehelper.cpp [90/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_meta.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_meta.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_meta.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarbias_meta.cpp [91/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_opes.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_opes.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_opes.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarbias_opes.cpp [92/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/topologyholder.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/topologyholder.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/topologyholder.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/topologyholder.cpp [93/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/andersentemperaturecoupling.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/andersentemperaturecoupling.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/andersentemperaturecoupling.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/andersentemperaturecoupling.cpp [94/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/signallers.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/signallers.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/signallers.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/signallers.cpp [95/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -Wno-null-conversion -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/selection/CMakeFiles/scanner.dir/scanner.cpp.o -MF src/gromacs/selection/CMakeFiles/scanner.dir/scanner.cpp.o.d -o src/gromacs/selection/CMakeFiles/scanner.dir/scanner.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/scanner.cpp [96/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/constraintelement.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/constraintelement.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/constraintelement.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/constraintelement.cpp [97/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/energyterm.cpp.o -MF src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/energyterm.cpp.o.d -o src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/energyterm.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/energyanalysis/energyterm.cpp [98/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/trajectoryelement.cpp [99/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/fileio/h5md/CMakeFiles/h5md.dir/h5md.cpp.o -MF src/gromacs/fileio/h5md/CMakeFiles/h5md.dir/h5md.cpp.o.d -o src/gromacs/fileio/h5md/CMakeFiles/h5md.dir/h5md.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/h5md/h5md.cpp [100/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/statTimer -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/md5sum.cpp.o -MF src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/md5sum.cpp.o.d -o src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/md5sum.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/library/md5sum.cpp [101/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/expandedensembleelement.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/expandedensembleelement.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/expandedensembleelement.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/expandedensembleelement.cpp [102/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/computeglobalselement.cpp [103/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/freeenergyperturbationdata.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/freeenergyperturbationdata.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/freeenergyperturbationdata.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/freeenergyperturbationdata.cpp [104/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/forceelement.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/forceelement.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/forceelement.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/forceelement.cpp [105/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarmodule.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarmodule.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarmodule.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarmodule.cpp [106/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/firstorderpressurecoupling.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/firstorderpressurecoupling.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/firstorderpressurecoupling.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/firstorderpressurecoupling.cpp [107/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/energydata.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/energydata.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/energydata.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/energydata.cpp [108/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/statTimer -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/stdafx.cpp.o -MF src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/stdafx.cpp.o.d -o src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/stdafx.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/statTimer/stdafx.cpp [109/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/statTimer -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/action.transpose.cpp.o -MF src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/action.transpose.cpp.o.d -o src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/action.transpose.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/library/action.transpose.cpp [110/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/statTimer -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/enqueue.cpp.o -MF src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/enqueue.cpp.o.d -o src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/enqueue.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/library/enqueue.cpp [111/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/statTimer -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/fft_binary_lookup.cpp.o -MF src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/fft_binary_lookup.cpp.o.d -o src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/fft_binary_lookup.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/library/fft_binary_lookup.cpp [112/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/pull_rotation.cpp.o -MF src/gromacs/pulling/CMakeFiles/pulling.dir/pull_rotation.cpp.o.d -o src/gromacs/pulling/CMakeFiles/pulling.dir/pull_rotation.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/pull_rotation.cpp [113/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/pull.cpp.o -MF src/gromacs/pulling/CMakeFiles/pulling.dir/pull.cpp.o.d -o src/gromacs/pulling/CMakeFiles/pulling.dir/pull.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/pull.cpp [114/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/statTimer -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/stdafx.cpp.o -MF src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/stdafx.cpp.o.d -o src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/stdafx.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/library/stdafx.cpp [115/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvar.cpp [116/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/pullelement.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/pullelement.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/pullelement.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/pullelement.cpp [117/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/statTimer -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/lifetime.cpp.o -MF src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/lifetime.cpp.o.d -o src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/lifetime.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/library/lifetime.cpp [118/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/statTimer -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.extern.cpp.o -MF src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.extern.cpp.o.d -o src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.extern.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/statTimer/statisticalTimer.extern.cpp [119/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/statTimer -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/accessors.cpp.o -MF src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/accessors.cpp.o.d -o src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/accessors.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/library/accessors.cpp [120/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/parrinellorahmanbarostat.cpp [121/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/programs/CMakeFiles/gmx_objlib.dir/gmx.cpp.o -MF src/programs/CMakeFiles/gmx_objlib.dir/gmx.cpp.o.d -o src/programs/CMakeFiles/gmx_objlib.dir/gmx.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/programs/gmx.cpp [122/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/statTimer -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/transform.cpp.o -MF src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/transform.cpp.o.d -o src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/transform.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/library/transform.cpp [123/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/statTimer -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.CPU.cpp.o -MF src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.CPU.cpp.o.d -o src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.CPU.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/statTimer/statisticalTimer.CPU.cpp [124/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/programs/CMakeFiles/gmx_objlib.dir/legacymodules.cpp.o -MF src/programs/CMakeFiles/gmx_objlib.dir/legacymodules.cpp.o.d -o src/programs/CMakeFiles/gmx_objlib.dir/legacymodules.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/programs/legacymodules.cpp [125/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/mttk.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/mttk.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/mttk.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/mttk.cpp [126/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -MF src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o.d -o src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/programs/mdrun/mdrun.cpp [127/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/nosehooverchains.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/nosehooverchains.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/nosehooverchains.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/nosehooverchains.cpp [128/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -MF src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o.d -o src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/programs/mdrun/nonbonded_bench.cpp [129/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/statTimer -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/repo.cpp.o -MF src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/repo.cpp.o.d -o src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/repo.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/library/repo.cpp [130/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/statTimer -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.copy.cpp.o -MF src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.copy.cpp.o.d -o src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.copy.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/library/generator.copy.cpp [131/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/modularsimulator.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/modularsimulator.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/modularsimulator.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/modularsimulator.cpp [132/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -Wno-null-conversion -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/selection/CMakeFiles/scanner.dir/parser.cpp.o -MF src/gromacs/selection/CMakeFiles/scanner.dir/parser.cpp.o.d -o src/gromacs/selection/CMakeFiles/scanner.dir/parser.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/parser.cpp [133/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/velocityscalingtemperaturecoupling.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/velocityscalingtemperaturecoupling.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/velocityscalingtemperaturecoupling.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/velocityscalingtemperaturecoupling.cpp [134/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/statepropagatordata.cpp [135/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/statTimer -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.GPU.cpp.o -MF src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.GPU.cpp.o.d -o src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.GPU.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/statTimer/statisticalTimer.GPU.cpp [136/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/statTimer -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.transpose.gcn.cpp.o -MF src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.transpose.gcn.cpp.o.d -o src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.transpose.gcn.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/library/generator.transpose.gcn.cpp [137/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/statTimer -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/plan.cpp.o -MF src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/plan.cpp.o.d -o src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/plan.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/library/plan.cpp [138/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/options/CMakeFiles/options.dir/basicoptions.cpp.o -MF src/gromacs/options/CMakeFiles/options.dir/basicoptions.cpp.o.d -o src/gromacs/options/CMakeFiles/options.dir/basicoptions.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/options/basicoptions.cpp [139/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/simulatoralgorithm.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/simulatoralgorithm.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/simulatoralgorithm.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/simulatoralgorithm.cpp [140/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/propagator.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/propagator.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/propagator.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/propagator.cpp [141/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/statTimer -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.transpose.cpp.o -MF src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.transpose.cpp.o.d -o src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.transpose.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/library/generator.transpose.cpp [142/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/statTimer -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.stockham.cpp.o -MF src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.stockham.cpp.o.d -o src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.stockham.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/library/generator.stockham.cpp [143/978] cd /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/cmake -D VERSION_VARIABLES=/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/VersionInfo.cmake -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/baseversion-gen.cpp.cmakein -D VERSION_OUT=utility/baseversion-gen.cpp -D GMX_SOURCE_DOI= -D GMX_RELEASE_HASH= -D GMX_SOURCE_HASH= -P /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/cmake/gmxConfigureVersionInfo.cmake && /usr/bin/cmake -E touch utility/baseversion-gen.cpp [144/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/errorcodes.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/errorcodes.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/errorcodes.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/errorcodes.cpp [145/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/alignedallocator.cpp [146/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/physicalnodecommunicator.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/physicalnodecommunicator.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/physicalnodecommunicator.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/physicalnodecommunicator.cpp [147/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/booltype.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/booltype.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/booltype.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/booltype.cpp [148/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/logger.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/logger.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/logger.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/logger.cpp [149/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/any.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/any.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/any.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/any.cpp [150/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/int64_to_int.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/int64_to_int.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/int64_to_int.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/int64_to_int.cpp [151/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/compare.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/compare.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/compare.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/compare.cpp [152/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/baseversion.cpp [153/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxassert.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxassert.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxassert.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/gmxassert.cpp [154/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/init.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/init.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/init.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/init.cpp [155/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/basenetwork.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/basenetwork.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/basenetwork.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/basenetwork.cpp [156/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/ikeyvaluetreeerror.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/ikeyvaluetreeerror.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/ikeyvaluetreeerror.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/ikeyvaluetreeerror.cpp [157/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/fileredirector.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/fileredirector.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/fileredirector.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/fileredirector.cpp [158/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/pleasecite.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/pleasecite.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/pleasecite.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/pleasecite.cpp [159/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/niceheader.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/niceheader.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/niceheader.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/niceheader.cpp [160/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/errorformat.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/errorformat.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/errorformat.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/errorformat.cpp [161/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/message_string_collector.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/message_string_collector.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/message_string_collector.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/message_string_collector.cpp [162/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxomp.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxomp.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxomp.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/gmxomp.cpp [163/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/coolstuff.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/coolstuff.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/coolstuff.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/coolstuff.cpp [164/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/cstringutil.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/cstringutil.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/cstringutil.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/cstringutil.cpp [165/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/sysinfo.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/sysinfo.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/sysinfo.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/sysinfo.cpp [166/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/programcontext.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/programcontext.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/programcontext.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/programcontext.cpp [167/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/fatalerror.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/fatalerror.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/fatalerror.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/fatalerror.cpp [168/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreemdpwriter.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreemdpwriter.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreemdpwriter.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/keyvaluetreemdpwriter.cpp [169/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/smalloc.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/smalloc.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/smalloc.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/smalloc.cpp [170/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/veccompare.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/veccompare.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/veccompare.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/veccompare.cpp [171/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/stringstream.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/stringstream.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/stringstream.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/stringstream.cpp [172/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/mpicomm.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/mpicomm.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/mpicomm.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/mpicomm.cpp [173/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/filestream.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/filestream.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/filestream.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/filestream.cpp [174/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/loggerbuilder.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/loggerbuilder.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/loggerbuilder.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/loggerbuilder.cpp [175/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/strconvert.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/strconvert.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/strconvert.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/strconvert.cpp [176/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/strdb.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/strdb.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/strdb.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/strdb.cpp [177/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/txtdump.cpp [178/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/path.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/path.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/path.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/path.cpp [179/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/textreader.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/textreader.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/textreader.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/textreader.cpp [180/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/vecdump.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/vecdump.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/vecdump.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/vecdump.cpp [181/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetree.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetree.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetree.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/keyvaluetree.cpp [182/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/futil.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/futil.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/futil.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/futil.cpp [183/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/directoryenumerator.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/directoryenumerator.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/directoryenumerator.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/directoryenumerator.cpp [184/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/textwriter.cpp [185/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/stringutil.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/stringutil.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/stringutil.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/stringutil.cpp [186/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/datafilefinder.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/datafilefinder.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/datafilefinder.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/datafilefinder.cpp [187/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/exceptions.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/exceptions.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/exceptions.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/exceptions.cpp [188/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp [189/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreetransform.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreetransform.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreetransform.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/keyvaluetreetransform.cpp [190/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp [191/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_F.cpp [192/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp [193/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp [194/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_F.cpp [195/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp [196/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp [197/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp [198/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp [199/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp [200/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp [201/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp [202/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp [203/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VF.cpp [204/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp [205/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp [206/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp [207/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp [208/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp [209/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VF.cpp [210/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp [211/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp [212/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp [213/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp [214/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp [215/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp [216/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp [217/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp [218/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp [219/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp [220/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_F.cpp [221/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp [222/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/mpiinfo.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/mpiinfo.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/mpiinfo.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/mpiinfo.cpp [223/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp [224/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp [225/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp [226/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp [227/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VgrpF.cpp [228/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp [229/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp [230/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp [231/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp [232/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp [233/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp [234/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp [235/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp [236/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp [237/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp [238/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp [239/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp [240/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp [241/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp [242/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp [243/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp [244/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp [245/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp [246/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp [247/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp [248/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp [249/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp [250/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp [251/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp [252/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp [253/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp [254/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp [255/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp [256/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp [257/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp [258/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp [259/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VF.cpp [260/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp [261/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp [262/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VF.cpp [263/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp [264/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp [265/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp [266/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp [267/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp [268/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp [269/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp [270/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp [271/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VF.cpp [272/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp [273/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp [274/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp [275/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp [276/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp [277/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp [278/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp [279/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp [280/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp [281/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp [282/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp [283/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp [284/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp [285/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp [286/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_F.cpp [287/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp [288/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp [289/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_F.cpp [290/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp [291/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VF.cpp [292/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_F.cpp [293/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp [294/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VF.cpp [295/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp [296/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp [297/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp [298/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp [299/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp [300/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp [301/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_F.cpp [302/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp [303/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VF.cpp [304/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_F.cpp [305/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp [306/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VF.cpp [307/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp [308/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VF.cpp [309/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_F.cpp [310/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp [311/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VgrpF.cpp [312/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp [313/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp [314/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp [315/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp [316/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp [317/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp [318/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp [319/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp [320/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp [321/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp [322/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp [323/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp [324/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp [325/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp [326/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp [327/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp [328/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp [329/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp [330/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp [331/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp [332/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp [333/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp [334/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp [335/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp [336/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp [337/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_F.cpp [338/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp [339/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp [340/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp [341/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp [342/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_F.cpp [343/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp [344/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VF.cpp [345/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp [346/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_F.cpp [347/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp [348/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VF.cpp [349/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_F.cpp [350/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VF.cpp [351/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp [352/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VF.cpp [353/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_F.cpp [354/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp [355/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_F.cpp [356/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VF.cpp [357/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp [358/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp [359/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp [360/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp [361/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_F.cpp [362/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VF.cpp [363/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp [364/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_F.cpp [365/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VF.cpp [366/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VgrpF.cpp [367/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VF.cpp [368/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp [369/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_F.cpp [370/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernel_common.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernel_common.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernel_common.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernel_common.cpp [371/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistsets.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistsets.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistsets.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/pairlistsets.cpp [372/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/exclusionchecker.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/exclusionchecker.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/exclusionchecker.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/exclusionchecker.cpp [373/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_geometry.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_geometry.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_geometry.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/nbnxm_geometry.cpp [374/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_gpu_buffer_ops_internal_ocl.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_gpu_buffer_ops_internal_ocl.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_gpu_buffer_ops_internal_ocl.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/opencl/nbnxm_gpu_buffer_ops_internal_ocl.cpp [375/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/commandline/cmdlinehelpcontext.cpp [376/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_gpu_ref.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_gpu_ref.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_gpu_ref.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_reference/kernel_gpu_ref.cpp [377/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/freeenergydispatch.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/freeenergydispatch.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/freeenergydispatch.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/freeenergydispatch.cpp [378/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistparams.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistparams.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistparams.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/pairlistparams.cpp [379/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_system.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_system.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_system.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/benchmark/bench_system.cpp [380/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistwork.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistwork.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistwork.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/pairlistwork.cpp [381/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/gridset.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/gridset.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/gridset.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/gridset.cpp [382/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_prune.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_prune.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_prune.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_reference/kernel_ref_prune.cpp [383/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/nbnxm.cpp [384/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairsearch.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairsearch.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairsearch.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/pairsearch.cpp [385/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodulesettings.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodulesettings.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodulesettings.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/commandline/cmdlinemodulesettings.cpp [386/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist_simd_kernel.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist_simd_kernel.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist_simd_kernel.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/pairlist_simd_kernel.cpp [387/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodule.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodule.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodule.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/commandline/cmdlinemodule.cpp [388/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/simd_energy_accumulator.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/simd_energy_accumulator.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/simd_energy_accumulator.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/simd_energy_accumulator.cpp [389/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistset.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistset.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistset.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/pairlistset.cpp [390/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/simd_prune_kernel.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/simd_prune_kernel.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/simd_prune_kernel.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/simd_prune_kernel.cpp [391/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/prunekerneldispatch.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/prunekerneldispatch.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/prunekerneldispatch.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/prunekerneldispatch.cpp [392/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl_jit_support.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl_jit_support.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl_jit_support.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/opencl/nbnxm_ocl_jit_support.cpp [393/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl_data_mgmt.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl_data_mgmt.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl_data_mgmt.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/opencl/nbnxm_ocl_data_mgmt.cpp [394/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineinit.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineinit.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineinit.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/commandline/cmdlineinit.cpp [395/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kerneldispatch.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kerneldispatch.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kerneldispatch.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kerneldispatch.cpp [396/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/viewit.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/commandline/viewit.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/commandline/viewit.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/commandline/viewit.cpp [397/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/commandline/cmdlineparser.cpp [398/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineoptionsmodule.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineoptionsmodule.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineoptionsmodule.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/commandline/cmdlineoptionsmodule.cpp [399/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/filenm.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/commandline/filenm.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/commandline/filenm.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/commandline/filenm.cpp [400/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/atomdistribution.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/atomdistribution.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/atomdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/atomdistribution.cpp [401/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_setup.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_setup.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_setup.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/benchmark/bench_setup.cpp [402/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/opencl/nbnxm_ocl.cpp [403/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist_tuning.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist_tuning.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist_tuning.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/pairlist_tuning.cpp [404/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/dlbtiming.cpp [405/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlb.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlb.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlb.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/dlb.cpp [406/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpwriter.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpwriter.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpwriter.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/commandline/cmdlinehelpwriter.cpp [407/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/shellcompletions.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/commandline/shellcompletions.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/commandline/shellcompletions.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/commandline/shellcompletions.cpp [408/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/grid.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/grid.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/grid.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/grid.cpp [409/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/commandline/cmdlineprogramcontext.cpp [410/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/box.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/box.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/box.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/box.cpp [411/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomset.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomset.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomset.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/localatomset.cpp [412/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/domdec_network.cpp [413/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/ga2la.cpp [414/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_setup.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_setup.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_setup.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/nbnxm_setup.cpp [415/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/computemultibodycutoffs.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/computemultibodycutoffs.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/computemultibodycutoffs.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/computemultibodycutoffs.cpp [416/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/collect.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/collect.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/collect.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/collect.cpp [417/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodulemanager.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodulemanager.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodulemanager.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/commandline/cmdlinemodulemanager.cpp [418/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetdata.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetdata.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetdata.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/localatomsetdata.cpp [419/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetmanager.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetmanager.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetmanager.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/localatomsetmanager.cpp [420/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/domdec_vsite.cpp [421/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/pargs.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/commandline/pargs.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/commandline/pargs.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/commandline/pargs.cpp [422/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/commandline/cmdlinehelpmodule.cpp [423/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_zones.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_zones.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_zones.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/domdec_zones.cpp [424/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/cellsizes.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/cellsizes.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/cellsizes.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/cellsizes.cpp [425/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/gpuhaloexchange_impl.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/gpuhaloexchange_impl.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/gpuhaloexchange_impl.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/gpuhaloexchange_impl.cpp [426/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/functions.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/math/functions.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/math/functions.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/functions.cpp [427/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/nsgrid.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/nsgrid.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/nsgrid.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/nsgrid.cpp [428/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/atomdata.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/atomdata.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/atomdata.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/atomdata.cpp [429/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/dump.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/dump.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/dump.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/dump.cpp [430/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/3dtransforms.cpp [431/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/domainpaircomm.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/domainpaircomm.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/domainpaircomm.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/domainpaircomm.cpp [432/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/coordinatetransformation.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/math/coordinatetransformation.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/math/coordinatetransformation.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/coordinatetransformation.cpp [433/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/utilities.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/math/utilities.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/math/utilities.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/utilities.cpp [434/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/domdec_specatomcomm.cpp [435/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/mdsetup.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/mdsetup.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/mdsetup.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/mdsetup.cpp [436/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/distribute.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/distribute.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/distribute.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/distribute.cpp [437/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/densityfittingforce.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/math/densityfittingforce.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/math/densityfittingforce.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/densityfittingforce.cpp [438/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/optimization.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/math/optimization.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/math/optimization.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/optimization.cpp [439/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/utility.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/utility.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/utility.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/utility.cpp [440/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/commrec.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/commrec.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/commrec.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdtypes/commrec.cpp [441/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/do_fit.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/math/do_fit.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/math/do_fit.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/do_fit.cpp [442/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/makebondedlinks.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/makebondedlinks.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/makebondedlinks.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/makebondedlinks.cpp [443/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/invertmatrix.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/math/invertmatrix.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/math/invertmatrix.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/invertmatrix.cpp [444/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/domdec_constraints.cpp [445/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/localtopologychecker.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/localtopologychecker.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/localtopologychecker.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/localtopologychecker.cpp [446/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/domdec_setup.cpp [447/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/haloexchangesetup.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/haloexchangesetup.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/haloexchangesetup.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/haloexchangesetup.cpp [448/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/gausstransform.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/math/gausstransform.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/math/gausstransform.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/gausstransform.cpp [449/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/densityfit.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/math/densityfit.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/math/densityfit.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/densityfit.cpp [450/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/exponentialmovingaverage.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/math/exponentialmovingaverage.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/math/exponentialmovingaverage.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/exponentialmovingaverage.cpp [451/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/md_enums.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/md_enums.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/md_enums.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdtypes/md_enums.cpp [452/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/haloexchange.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/haloexchange.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/haloexchange.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/haloexchange.cpp [453/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/neldermead.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/math/neldermead.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/math/neldermead.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/neldermead.cpp [454/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/nrjac.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/math/nrjac.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/math/nrjac.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/nrjac.cpp [455/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/iforceprovider.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/iforceprovider.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/iforceprovider.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdtypes/iforceprovider.cpp [456/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/forcebuffers.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/forcebuffers.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/forcebuffers.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdtypes/forcebuffers.cpp [457/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/boxutilities.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/boxutilities.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/boxutilities.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/boxutilities.cpp [458/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/group.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/group.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/group.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdtypes/group.cpp [459/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/observableshistory.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/observableshistory.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/observableshistory.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdtypes/observableshistory.cpp [460/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbcenums.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbcenums.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbcenums.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/pbcenums.cpp [461/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/reversetopology.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/reversetopology.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/reversetopology.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/reversetopology.cpp [462/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/rstparser.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/rstparser.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/rstparser.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/onlinehelp/rstparser.cpp [463/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/onlinehelp/helpmanager.cpp [464/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/observablesreducer.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/observablesreducer.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/observablesreducer.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdtypes/observablesreducer.cpp [465/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/localtopology.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/localtopology.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/localtopology.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/localtopology.cpp [466/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/redistribute.cpp [467/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/random/tabulatednormaldistribution.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/random/tabulatednormaldistribution.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/random/tabulatednormaldistribution.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/random/tabulatednormaldistribution.cpp [468/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc_simd.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc_simd.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc_simd.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/pbc_simd.cpp [469/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/checkpointdata.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/checkpointdata.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/checkpointdata.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdtypes/checkpointdata.cpp [470/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/com.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/com.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/com.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/com.cpp [471/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/timing/external_tracing.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/timing/external_tracing.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/timing/external_tracing.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/external_tracing.cpp [472/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/timing/cyclecounter.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/timing/cyclecounter.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/timing/cyclecounter.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/cyclecounter.cpp [473/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/timing/walltime_accounting.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/timing/walltime_accounting.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/timing/walltime_accounting.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/walltime_accounting.cpp [474/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/multipletimestepping.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/multipletimestepping.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/multipletimestepping.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdtypes/multipletimestepping.cpp [475/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helptopic.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helptopic.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helptopic.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/onlinehelp/helptopic.cpp [476/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/random/seed.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/random/seed.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/random/seed.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/random/seed.cpp [477/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/interaction_const.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/interaction_const.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/interaction_const.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdtypes/interaction_const.cpp [478/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpformat.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpformat.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpformat.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/onlinehelp/helpformat.cpp [479/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/rmpbc.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/rmpbc.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/rmpbc.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/rmpbc.cpp [480/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/df_history.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/df_history.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/df_history.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdtypes/df_history.cpp [481/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbcmethods.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbcmethods.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbcmethods.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/pbcmethods.cpp [482/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/restraint/manager.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/restraint/manager.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/restraint/manager.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/restraint/manager.cpp [483/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/serialization/inmemoryserializer.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/serialization/inmemoryserializer.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/serialization/inmemoryserializer.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/inmemoryserializer.cpp [484/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tables/splineutil.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/tables/splineutil.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/tables/splineutil.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/tables/splineutil.cpp [485/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/forcefieldparameters.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/topology/forcefieldparameters.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/topology/forcefieldparameters.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/forcefieldparameters.cpp [486/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/ifunc.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/topology/ifunc.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/topology/ifunc.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/ifunc.cpp [487/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/block.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/topology/block.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/topology/block.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/block.cpp [488/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/energyhistory.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/energyhistory.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/energyhistory.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdtypes/energyhistory.cpp [489/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/atomsbuilder.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/topology/atomsbuilder.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/topology/atomsbuilder.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/atomsbuilder.cpp [490/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/restraint/restraintmdmodule.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/restraint/restraintmdmodule.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/restraint/restraintmdmodule.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/restraint/restraintmdmodule.cpp [491/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/awh_history.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/awh_history.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/awh_history.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdtypes/awh_history.cpp [492/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/invblock.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/topology/invblock.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/topology/invblock.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/invblock.cpp [493/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/threaded_force_buffer.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/threaded_force_buffer.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/threaded_force_buffer.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdtypes/threaded_force_buffer.cpp [494/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpwritercontext.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpwritercontext.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpwritercontext.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/onlinehelp/helpwritercontext.cpp [495/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/pbc.cpp [496/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/pairlist.cpp [497/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/exclusionblocks.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/topology/exclusionblocks.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/topology/exclusionblocks.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/exclusionblocks.cpp [498/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/atoms.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/topology/atoms.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/topology/atoms.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/atoms.cpp [499/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/atomprop.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/topology/atomprop.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/topology/atomprop.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/atomprop.cpp [500/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tables/cubicsplinetable.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/tables/cubicsplinetable.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/tables/cubicsplinetable.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/tables/cubicsplinetable.cpp [501/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/binsearch.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/binsearch.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/binsearch.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/binsearch.cpp [502/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/inputrec.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/inputrec.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/inputrec.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdtypes/inputrec.cpp [503/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tables/quadraticsplinetable.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/tables/quadraticsplinetable.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/tables/quadraticsplinetable.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/tables/quadraticsplinetable.cpp [504/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/angle_correction.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/angle_correction.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/angle_correction.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/angle_correction.cpp [505/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/mshift.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/mshift.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/mshift.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/mshift.cpp [506/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/timing/wallcycle.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/timing/wallcycle.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/timing/wallcycle.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/wallcycle.cpp [507/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/idef.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/topology/idef.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/topology/idef.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/idef.cpp [508/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/state.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/state.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/state.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdtypes/state.cpp [509/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/serialization/keyvaluetreeserializer.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/serialization/keyvaluetreeserializer.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/serialization/keyvaluetreeserializer.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/keyvaluetreeserializer.cpp [510/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/dens_filter.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/dens_filter.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/dens_filter.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/dens_filter.cpp [511/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/residuetypes.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/topology/residuetypes.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/topology/residuetypes.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/residuetypes.cpp [512/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/mtop_atomloops.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/topology/mtop_atomloops.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/topology/mtop_atomloops.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/mtop_atomloops.cpp [513/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectory/trajectoryframe.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectory/trajectoryframe.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectory/trajectoryframe.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectory/trajectoryframe.cpp [514/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/imd/imdsocket.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/imd/imdsocket.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/imd/imdsocket.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/imd/imdsocket.cpp [515/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectory/energyframe.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectory/energyframe.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectory/energyframe.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectory/energyframe.cpp [516/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mimic/utilities.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mimic/utilities.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mimic/utilities.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mimic/utilities.cpp [517/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tables/forcetable.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/tables/forcetable.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/tables/forcetable.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/tables/forcetable.cpp [518/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/topsort.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/topology/topsort.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/topology/topsort.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/topsort.cpp [519/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mimic/communicator_stub.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mimic/communicator_stub.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mimic/communicator_stub.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mimic/communicator_stub.cpp [520/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/cmat.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/cmat.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/cmat.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/cmat.cpp [521/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/eigio.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/eigio.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/eigio.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/eigio.cpp [522/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/symtab.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/topology/symtab.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/topology/symtab.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/symtab.cpp [523/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/fitahx.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/fitahx.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/fitahx.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/fitahx.cpp [524/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/embedded_system_preprocessing.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/topology/embedded_system_preprocessing.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/topology/embedded_system_preprocessing.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/embedded_system_preprocessing.cpp [525/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/topology.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/topology/topology.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/topology/topology.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/topology.cpp [526/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/dlist.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/dlist.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/dlist.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/dlist.cpp [527/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_angle.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_angle.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_angle.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_angle.cpp [528/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/anadih.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/anadih.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/anadih.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/anadih.cpp [529/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/domdec.cpp [530/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/cluster_methods.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/cluster_methods.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/cluster_methods.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/cluster_methods.cpp [531/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/imd/imd.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/imd/imd.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/imd/imd.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/imd/imd.cpp [532/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/mtop_util.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/topology/mtop_util.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/topology/mtop_util.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/mtop_util.cpp [533/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_bundle.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_bundle.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_bundle.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_bundle.cpp [534/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/partition.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/partition.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/partition.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/partition.cpp [535/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/index.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/topology/index.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/topology/index.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/index.cpp [536/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_clustsize.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_clustsize.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_clustsize.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_clustsize.cpp [537/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dielectric.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dielectric.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dielectric.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_dielectric.cpp [538/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_confrms.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_confrms.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_confrms.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_confrms.cpp [539/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_1x1.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_1x1.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_1x1.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_reference/kernel_ref_1x1.cpp [540/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_densmap.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_densmap.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_densmap.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_densmap.cpp [541/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_current.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_current.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_current.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_current.cpp [542/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_analyze.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_analyze.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_analyze.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_analyze.cpp [543/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_awh.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_awh.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_awh.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_awh.cpp [544/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_density.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_density.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_density.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_density.cpp [545/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_densorder.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_densorder.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_densorder.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_densorder.cpp [546/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dos.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dos.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dos.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_dos.cpp [547/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dyecoupl.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dyecoupl.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dyecoupl.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_dyecoupl.cpp [548/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_covar.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_covar.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_covar.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_covar.cpp [549/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_anaeig.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_anaeig.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_anaeig.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_anaeig.cpp [550/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_enemat.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_enemat.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_enemat.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_enemat.cpp [551/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_h2order.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_h2order.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_h2order.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_h2order.cpp [552/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_helix.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_helix.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_helix.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_helix.cpp [553/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_filter.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_filter.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_filter.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_filter.cpp [554/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_cluster.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_cluster.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_cluster.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_cluster.cpp [555/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_lie.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_lie.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_lie.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_lie.cpp [556/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_gyrate.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_gyrate.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_gyrate.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_gyrate.cpp [557/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_bar.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_bar.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_bar.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_bar.cpp [558/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dipoles.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dipoles.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dipoles.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_dipoles.cpp [559/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_helixorient.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_helixorient.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_helixorient.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_helixorient.cpp [560/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_make_edi.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_make_edi.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_make_edi.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_make_edi.cpp [561/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/essentialdynamics/edsam.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/essentialdynamics/edsam.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/essentialdynamics/edsam.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/essentialdynamics/edsam.cpp [562/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_mdmat.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_mdmat.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_mdmat.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_mdmat.cpp [563/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmens.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmens.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmens.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_nmens.cpp [564/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rama.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rama.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rama.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_rama.cpp [565/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_hydorder.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_hydorder.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_hydorder.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_hydorder.cpp [566/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmtraj.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmtraj.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmtraj.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_nmtraj.cpp [567/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_saxs.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_saxs.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_saxs.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_saxs.cpp [568/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmeig.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmeig.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmeig.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_nmeig.cpp [569/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_principal.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_principal.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_principal.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_principal.cpp [570/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/swap/swapcoords.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/swap/swapcoords.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/swap/swapcoords.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/swap/swapcoords.cpp [571/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_mindist.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_mindist.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_mindist.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_mindist.cpp [572/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rotacf.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rotacf.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rotacf.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_rotacf.cpp [573/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_polystat.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_polystat.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_polystat.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_polystat.cpp [574/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_disre.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_disre.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_disre.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_disre.cpp [575/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_potential.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_potential.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_potential.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_potential.cpp [576/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sigeps.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sigeps.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sigeps.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_sigeps.cpp [577/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_saltbr.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_saltbr.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_saltbr.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_saltbr.cpp [578/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rotmat.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rotmat.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rotmat.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_rotmat.cpp [579/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sans.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sans.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sans.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_sans.cpp [580/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_order.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_order.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_order.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_order.cpp [581/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_chi.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_chi.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_chi.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_chi.cpp [582/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rmsf.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rmsf.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rmsf.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_rmsf.cpp [583/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rmsdist.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rmsdist.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rmsdist.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_rmsdist.cpp [584/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_energy.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_energy.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_energy.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_energy.cpp [585/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_wheel.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_wheel.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_wheel.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_wheel.cpp [586/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_spatial.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_spatial.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_spatial.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_spatial.cpp [587/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sorient.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sorient.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sorient.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_sorient.cpp [588/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmr.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmr.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmr.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_nmr.cpp [589/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_spol.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_spol.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_spol.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_spol.cpp [590/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/powerspect.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/powerspect.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/powerspect.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/powerspect.cpp [591/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_trjorder.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_trjorder.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_trjorder.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_trjorder.cpp [592/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/thermochemistry.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/thermochemistry.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/thermochemistry.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/thermochemistry.cpp [593/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_tcaf.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_tcaf.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_tcaf.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_tcaf.cpp [594/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_velacc.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_velacc.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_velacc.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_velacc.cpp [595/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/princ.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/princ.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/princ.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/princ.cpp [596/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/nrama.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/nrama.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/nrama.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/nrama.cpp [597/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/calch.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/calch.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/calch.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/calch.cpp [598/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/pp2shift.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/pp2shift.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/pp2shift.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/pp2shift.cpp [599/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/compute_io.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/compute_io.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/compute_io.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/compute_io.cpp [600/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/hxprops.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/hxprops.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/hxprops.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/hxprops.cpp [601/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_vanhove.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_vanhove.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_vanhove.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_vanhove.cpp [602/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rms.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rms.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rms.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_rms.cpp [603/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/nsfactor.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/nsfactor.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/nsfactor.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/nsfactor.cpp [604/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/add_par.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/add_par.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/add_par.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/add_par.cpp [605/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/sfactor.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/sfactor.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/sfactor.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/sfactor.cpp [606/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_bond_atomtype.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_bond_atomtype.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_bond_atomtype.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/gpp_bond_atomtype.cpp [607/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sham.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sham.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sham.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_sham.cpp [608/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/fflibutil.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/fflibutil.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/fflibutil.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/fflibutil.cpp [609/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_traj.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_traj.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_traj.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_traj.cpp [610/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/makeexclusiondistances.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/makeexclusiondistances.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/makeexclusiondistances.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/makeexclusiondistances.cpp [611/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/convparm.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/convparm.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/convparm.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/convparm.cpp [612/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_maxwell_velocities.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_maxwell_velocities.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_maxwell_velocities.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/gen_maxwell_velocities.cpp [613/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genrestr.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genrestr.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genrestr.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/genrestr.cpp [614/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/hizzie.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/hizzie.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/hizzie.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/hizzie.cpp [615/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_nextnb.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_nextnb.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_nextnb.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/gpp_nextnb.cpp [616/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genconf.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genconf.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genconf.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/genconf.cpp [617/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/massrepartitioning.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/massrepartitioning.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/massrepartitioning.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/massrepartitioning.cpp [618/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pgutil.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pgutil.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pgutil.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/pgutil.cpp [619/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/editconf.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/editconf.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/editconf.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/editconf.cpp [620/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/nm2type.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/nm2type.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/nm2type.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/nm2type.cpp [621/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/h_db.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/h_db.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/h_db.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/h_db.cpp [622/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genhydro.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genhydro.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genhydro.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/genhydro.cpp [623/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/hackblock.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/hackblock.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/hackblock.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/hackblock.cpp [624/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genion.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genion.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genion.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/genion.cpp [625/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_atomtype.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_atomtype.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_atomtype.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/gpp_atomtype.cpp [626/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gmxcpp.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gmxcpp.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gmxcpp.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/gmxcpp.cpp [627/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readrot.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readrot.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readrot.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/readrot.cpp [628/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/tomorse.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/tomorse.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/tomorse.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/tomorse.cpp [629/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/crosscorr.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/crosscorr.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/crosscorr.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/correlationfunctions/crosscorr.cpp [630/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_wham.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_wham.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_wham.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_wham.cpp [631/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_xpm2ps.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_xpm2ps.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_xpm2ps.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_xpm2ps.cpp [632/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topdirs.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topdirs.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topdirs.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/topdirs.cpp [633/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topshake.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topshake.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topshake.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/topshake.cpp [634/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/toputil.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/toputil.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/toputil.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/toputil.cpp [635/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/gmx_lmcurve.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/gmx_lmcurve.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/gmx_lmcurve.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/correlationfunctions/gmx_lmcurve.cpp [636/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datamodule.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datamodule.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datamodule.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/analysisdata/datamodule.cpp [637/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/polynomials.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/polynomials.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/polynomials.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/correlationfunctions/polynomials.cpp [638/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/integrate.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/integrate.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/integrate.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/correlationfunctions/integrate.cpp [639/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/insert_molecules.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/insert_molecules.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/insert_molecules.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/insert_molecules.cpp [640/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_hbond.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_hbond.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_hbond.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_hbond.cpp [641/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/manyautocorrelation.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/manyautocorrelation.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/manyautocorrelation.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/correlationfunctions/manyautocorrelation.cpp [642/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/xlate.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/xlate.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/xlate.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/xlate.cpp [643/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/statistics/statistics.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/statistics/statistics.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/statistics/statistics.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/statistics/statistics.cpp [644/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/expfit.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/expfit.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/expfit.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/correlationfunctions/expfit.cpp [645/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/dataframe.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/dataframe.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/dataframe.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/analysisdata/dataframe.cpp [646/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/dataproxy.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/dataproxy.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/dataproxy.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/analysisdata/dataproxy.cpp [647/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/analysisdata.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/analysisdata.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/analysisdata.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/analysisdata/analysisdata.cpp [648/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/specbond.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/specbond.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/specbond.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/specbond.cpp [649/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/arraydata.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/arraydata.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/arraydata.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/analysisdata/arraydata.cpp [650/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/abstractdata.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/abstractdata.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/abstractdata.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/analysisdata/abstractdata.cpp [651/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/autocorr.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/autocorr.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/autocorr.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/correlationfunctions/autocorr.cpp [652/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/frameaverager.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/frameaverager.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/frameaverager.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/analysisdata/modules/frameaverager.cpp [653/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/solvate.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/solvate.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/solvate.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/solvate.cpp [654/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_ad.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_ad.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_ad.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/gen_ad.cpp [655/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datamodulemanager.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datamodulemanager.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datamodulemanager.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/analysisdata/datamodulemanager.cpp [656/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadaptercontainer.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadaptercontainer.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadaptercontainer.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/coordinateio/outputadaptercontainer.cpp [657/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/average.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/average.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/average.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/analysisdata/modules/average.cpp [658/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setstarttime.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setstarttime.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setstarttime.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/coordinateio/outputadapters/setstarttime.cpp [659/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/settimestep.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/settimestep.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/settimestep.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/coordinateio/outputadapters/settimestep.cpp [660/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/displacement.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/displacement.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/displacement.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/analysisdata/modules/displacement.cpp /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/analysisdata/modules/displacement.cpp: In member function ‘virtual void gmx::AnalysisDataDisplacementModule::frameFinished(const gmx::AnalysisDataFrameHeader&)’: /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/analysisdata/modules/displacement.cpp:279:13: warning: variable ‘k’ set but not used [-Wunused-but-set-variable=] 279 | int k = 1; | ^ At top level: cc1plus: note: unrecognized command-line option ‘-Wno-cast-function-type-strict’ may have been intended to silence earlier diagnostics cc1plus: note: unrecognized command-line option ‘-Wno-suggest-destructor-override’ may have been intended to silence earlier diagnostics [661/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/ter_db.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/ter_db.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/ter_db.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/ter_db.cpp [662/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/x2top.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/x2top.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/x2top.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/x2top.cpp [663/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setprecision.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setprecision.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setprecision.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/coordinateio/outputadapters/setprecision.cpp [664/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setforces.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setforces.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setforces.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/coordinateio/outputadapters/setforces.cpp [665/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/outputselector.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/outputselector.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/outputselector.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/coordinateio/outputadapters/outputselector.cpp [666/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/frameconverters/register.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/frameconverters/register.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/frameconverters/register.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/coordinateio/frameconverters/register.cpp [667/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/resall.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/resall.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/resall.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/resall.cpp [668/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setatoms.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setatoms.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setatoms.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/coordinateio/outputadapters/setatoms.cpp [669/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setvelocities.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setvelocities.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setvelocities.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/coordinateio/outputadapters/setvelocities.cpp [670/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/lifetime.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/lifetime.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/lifetime.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/analysisdata/modules/lifetime.cpp [671/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/requirements.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/requirements.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/requirements.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/coordinateio/requirements.cpp [672/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datastorage.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datastorage.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datastorage.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/analysisdata/datastorage.cpp [673/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules.cpp [674/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/analysissettings.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/analysissettings.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/analysissettings.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/analysissettings.cpp [675/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topio.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topio.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topio.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/topio.cpp [676/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/plot.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/plot.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/plot.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/analysisdata/modules/plot.cpp [677/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/coordinatefile.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/coordinatefile.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/coordinatefile.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/coordinateio/coordinatefile.cpp [678/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/isotope.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/isotope.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/isotope.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/isotope.cpp [679/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/convert_trj.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/convert_trj.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/convert_trj.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/convert_trj.cpp [680/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/vsite_parm.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/vsite_parm.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/vsite_parm.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/vsite_parm.cpp [681/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/cmdlinerunner.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/cmdlinerunner.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/cmdlinerunner.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/cmdlinerunner.cpp [682/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/analysismodule.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/analysismodule.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/analysismodule.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/analysismodule.cpp [683/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_vsite.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_vsite.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_vsite.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/gen_vsite.cpp [684/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/histogram.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/histogram.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/histogram.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/analysisdata/modules/histogram.cpp [685/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/gyrate.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/gyrate.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/gyrate.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/gyrate.cpp [686/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/extract_cluster.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/extract_cluster.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/extract_cluster.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/extract_cluster.cpp [687/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering-debye-sans.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering-debye-sans.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering-debye-sans.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/scattering-debye-sans.cpp [688/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/distance.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/distance.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/distance.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/distance.cpp [689/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/freevolume.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/freevolume.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/freevolume.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/freevolume.cpp [690/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering-debye-saxs.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering-debye-saxs.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering-debye-saxs.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/scattering-debye-saxs.cpp [691/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scatteringfactors.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scatteringfactors.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scatteringfactors.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/scatteringfactors.cpp [692/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2top.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2top.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2top.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/pdb2top.cpp [693/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering-debye.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering-debye.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering-debye.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/scattering-debye.cpp [694/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/pairdist.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/pairdist.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/pairdist.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/pairdist.cpp [695/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_4x4.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_4x4.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_4x4.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_reference/kernel_ref_4x4.cpp [696/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/angle.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/angle.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/angle.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/angle.cpp [697/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/rdf.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/rdf.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/rdf.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/rdf.cpp [698/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/trajectory.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/trajectory.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/trajectory.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/trajectory.cpp [699/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/conformation_utilities.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/conformation_utilities.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/conformation_utilities.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxlib/conformation_utilities.cpp [700/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/surfacearea.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/surfacearea.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/surfacearea.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/surfacearea.cpp [701/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nrnb.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nrnb.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nrnb.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxlib/nrnb.cpp [702/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tools/mk_angndx.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/tools/mk_angndx.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/tools/mk_angndx.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/tools/mk_angndx.cpp [703/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/topologyinformation.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/topologyinformation.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/topologyinformation.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/topologyinformation.cpp [704/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/network.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/network.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/network.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxlib/network.cpp [705/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/runnercommon.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/runnercommon.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/runnercommon.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/runnercommon.cpp [706/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/checkpointhandler.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/checkpointhandler.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/checkpointhandler.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/checkpointhandler.cpp [707/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/scattering.cpp [708/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calcvir.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calcvir.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calcvir.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/calcvir.cpp [709/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/sasa.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/sasa.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/sasa.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/sasa.cpp [710/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calcmu.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calcmu.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calcmu.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/calcmu.cpp [711/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tools/eneconv.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/tools/eneconv.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/tools/eneconv.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/tools/eneconv.cpp [712/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tools/report_methods.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/tools/report_methods.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/tools/report_methods.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/tools/report_methods.cpp [713/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/boxdeformation.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/boxdeformation.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/boxdeformation.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/boxdeformation.cpp [714/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/broadcaststructs.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/broadcaststructs.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/broadcaststructs.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/broadcaststructs.cpp [715/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tools/dump.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/tools/dump.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/tools/dump.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/tools/dump.cpp [716/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/energydrifttracker.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/energydrifttracker.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/energydrifttracker.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/energydrifttracker.cpp [717/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tools/check.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/tools/check.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/tools/check.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/tools/check.cpp [718/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/select.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/select.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/select.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/select.cpp [719/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/msd.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/msd.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/msd.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/msd.cpp [720/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/expanded_internal.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/expanded_internal.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/expanded_internal.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/expanded_internal.cpp [721/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/ebin.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/ebin.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/ebin.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/ebin.cpp [722/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tools/trjcat.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/tools/trjcat.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/tools/trjcat.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/tools/trjcat.cpp [723/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/grompp.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/grompp.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/grompp.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/grompp.cpp [724/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/dssp.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/dssp.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/dssp.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/dssp.cpp [725/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/freeenergyparameters.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/freeenergyparameters.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/freeenergyparameters.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/freeenergyparameters.cpp [726/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constraintrange.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constraintrange.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constraintrange.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/constraintrange.cpp [727/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tools/pme_error.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/tools/pme_error.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/tools/pme_error.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/tools/pme_error.cpp [728/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/lincs_constraint_group_sizes.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/lincs_constraint_group_sizes.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/lincs_constraint_group_sizes.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/lincs_constraint_group_sizes.cpp [729/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tools/make_ndx.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/tools/make_ndx.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/tools/make_ndx.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/tools/make_ndx.cpp [730/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/gmx_omp_nthreads.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/gmx_omp_nthreads.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/gmx_omp_nthreads.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/gmx_omp_nthreads.cpp [731/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constraint_gpu_helpers.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constraint_gpu_helpers.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constraint_gpu_helpers.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/constraint_gpu_helpers.cpp [732/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/enerdata_utils.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/enerdata_utils.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/enerdata_utils.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/enerdata_utils.cpp [733/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdgraph_gpu_impl.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdgraph_gpu_impl.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdgraph_gpu_impl.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/mdgraph_gpu_impl.cpp [734/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/groupcoord.cpp [735/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tools/convert_tpr.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/tools/convert_tpr.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/tools/convert_tpr.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/tools/convert_tpr.cpp [736/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tools/trjconv.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/tools/trjconv.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/tools/trjconv.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/tools/trjconv.cpp [737/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/toppush.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/toppush.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/toppush.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/toppush.cpp [738/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/dispersioncorrection.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/dispersioncorrection.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/dispersioncorrection.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/dispersioncorrection.cpp [739/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/rbin.cpp [740/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/simulationsignal.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/simulationsignal.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/simulationsignal.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/simulationsignal.cpp [741/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/force.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/force.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/force.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/force.cpp [742/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tools/tune_pme.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/tools/tune_pme.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/tools/tune_pme.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/tools/tune_pme.cpp [743/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sighandler.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sighandler.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sighandler.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/sighandler.cpp [744/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/tgroup.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/tgroup.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/tgroup.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/tgroup.cpp [745/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stophandler.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stophandler.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stophandler.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/stophandler.cpp [746/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rf_util.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rf_util.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rf_util.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/rf_util.cpp [747/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2gmx.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2gmx.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2gmx.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/pdb2gmx.cpp [748/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/resethandler.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/resethandler.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/resethandler.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/resethandler.cpp [749/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/perf_est.cpp [750/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/hbond.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/hbond.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/hbond.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/hbond.cpp [751/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calc_verletbuf.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calc_verletbuf.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calc_verletbuf.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/calc_verletbuf.cpp [752/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readpull.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readpull.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readpull.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/readpull.cpp [753/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/mdebin_bar.cpp [754/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constr.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constr.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constr.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/constr.cpp [755/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/gpuforcereduction_impl_stubs.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/gpuforcereduction_impl_stubs.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/gpuforcereduction_impl_stubs.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/gpuforcereduction_impl_stubs.cpp [756/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/shake.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/shake.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/shake.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/shake.cpp [757/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stat.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stat.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stat.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/stat.cpp [758/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/coupling.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/coupling.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/coupling.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/coupling.cpp [759/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update_constrain_gpu_impl_stubs.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update_constrain_gpu_impl_stubs.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update_constrain_gpu_impl_stubs.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/update_constrain_gpu_impl_stubs.cpp [760/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/splitter.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/splitter.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/splitter.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/splitter.cpp [761/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/md_support.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/md_support.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/md_support.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/md_support.cpp [762/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdatoms.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdatoms.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdatoms.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/mdatoms.cpp [763/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/mdoutf.cpp [764/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/expanded.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/expanded.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/expanded.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/expanded.cpp [765/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/trajectory_writing.cpp [766/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update_vv.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update_vv.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update_vv.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/update_vv.cpp [767/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wholemoleculetransform.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wholemoleculetransform.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wholemoleculetransform.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/wholemoleculetransform.cpp [768/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biasparams.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biasparams.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biasparams.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/awh/biasparams.cpp [769/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/correlationgrid.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/correlationgrid.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/correlationgrid.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/awh/correlationgrid.cpp [770/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/energyoutput.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/energyoutput.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/energyoutput.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/energyoutput.cpp [771/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/pointstate.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/pointstate.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/pointstate.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/awh/pointstate.cpp [772/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingoutputprovider.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingoutputprovider.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingoutputprovider.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/densityfitting/densityfittingoutputprovider.cpp [773/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/wall.cpp [774/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/histogramsize.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/histogramsize.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/histogramsize.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/awh/histogramsize.cpp [775/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroupscog.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroupscog.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroupscog.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/updategroupscog.cpp [776/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/correlationtensor.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/correlationtensor.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/correlationtensor.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/awh/correlationtensor.cpp [777/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/correlationhistory.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/correlationhistory.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/correlationhistory.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/awh/correlationhistory.cpp [778/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/coordstate.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/coordstate.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/coordstate.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/awh/coordstate.cpp [779/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingparameters.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingparameters.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingparameters.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/densityfitting/densityfittingparameters.cpp [780/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biassharing.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biassharing.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biassharing.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/awh/biassharing.cpp [781/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingamplitudelookup.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingamplitudelookup.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingamplitudelookup.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/densityfitting/densityfittingamplitudelookup.cpp [782/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroups.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroups.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroups.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/updategroups.cpp [783/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vcm.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vcm.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vcm.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/vcm.cpp [784/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/membed.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/membed.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/membed.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/membed.cpp [785/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biasgrid.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biasgrid.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biasgrid.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/awh/biasgrid.cpp [786/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/bias.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/bias.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/bias.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/awh/bias.cpp [787/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/settle.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/settle.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/settle.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/settle.cpp [788/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biaswriter.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biaswriter.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biaswriter.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/awh/biaswriter.cpp [789/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/forcerec.cpp /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/forcerec.cpp: In function ‘std::vector makeLJPmeC6GridCorrectionParameters(int, gmx::ArrayRef, LongRangeVdW)’: /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/forcerec.cpp:181:23: warning: variable ‘k’ set but not used [-Wunused-but-set-variable=] 181 | int k = 0; | ^ At top level: cc1plus: note: unrecognized command-line option ‘-Wno-cast-function-type-strict’ may have been intended to silence earlier diagnostics cc1plus: note: unrecognized command-line option ‘-Wno-suggest-destructor-override’ may have been intended to silence earlier diagnostics [790/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/nnpot/binary_information.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/nnpot/binary_information.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/nnpot/binary_information.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/nnpot/binary_information.cpp [791/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/electricfield.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/electricfield.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/electricfield.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/electricfield.cpp [792/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readir.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readir.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readir.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/readir.cpp [793/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarssimulationsparameters.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarssimulationsparameters.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarssimulationsparameters.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/colvars/colvarssimulationsparameters.cpp [794/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmforceprovider_stub.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmforceprovider_stub.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmforceprovider_stub.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/qmmm/qmmmforceprovider_stub.cpp [795/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmforceproviderstate.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmforceproviderstate.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmforceproviderstate.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/qmmm/qmmmforceproviderstate.cpp [796/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/plumed/plumedOptions.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/plumed/plumedOptions.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/plumed/plumedOptions.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/plumed/plumedOptions.cpp [797/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/awh.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/awh.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/awh.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/awh/awh.cpp [798/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/listed_internal.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/listed_internal.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/listed_internal.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/listed_forces/listed_internal.cpp [799/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/nnpot/nnpotforceprovider_stub.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/nnpot/nnpotforceprovider_stub.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/nnpot/nnpotforceprovider_stub.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/nnpot/nnpotforceprovider_stub.cpp [800/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/lincs.cpp /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/lincs.cpp: In function ‘void gmx::lincs_update_atoms(Lincs*, int, real, ArrayRef, ArrayRef >, ArrayRef, real (*)[3])’: /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/lincs.cpp:513:19: warning: ‘master’ construct deprecated since OpenMP 5.1, use ‘masked’ [-Wdeprecated-openmp] 513 | #pragma omp master | ^ /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/lincs.cpp: In function ‘void gmx::do_lincs(ArrayRefWithPadding >, ArrayRefWithPadding >, const real (*)[3], t_pbc*, Lincs*, int, ArrayRef, gmx_domdec_t*, bool, real, bool*, real, ArrayRef >, bool, real (*)[3], gmx_wallcycle*)’: /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/lincs.cpp:1189:19: warning: ‘master’ construct deprecated since OpenMP 5.1, use ‘masked’ [-Wdeprecated-openmp] 1189 | #pragma omp master | ^ At top level: cc1plus: note: unrecognized command-line option ‘-Wno-cast-function-type-strict’ may have been intended to silence earlier diagnostics cc1plus: note: unrecognized command-line option ‘-Wno-suggest-destructor-override’ may have been intended to silence earlier diagnostics [801/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sim_util.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sim_util.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sim_util.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/sim_util.cpp [802/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/listed_forces_gpu_impl.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/listed_forces_gpu_impl.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/listed_forces_gpu_impl.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/listed_forces/listed_forces_gpu_impl.cpp [803/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarspreprocessor.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarspreprocessor.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarspreprocessor.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/colvars/colvarspreprocessor.cpp [804/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmminputgenerator.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmminputgenerator.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmminputgenerator.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/qmmm/qmmminputgenerator.cpp [805/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfitting.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfitting.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfitting.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/densityfitting/densityfitting.cpp [806/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/restcbt.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/restcbt.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/restcbt.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/listed_forces/restcbt.cpp [807/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/read_params.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/read_params.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/read_params.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/awh/read_params.cpp [808/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/plumed/plumedMDModule.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/plumed/plumedMDModule.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/plumed/plumedMDModule.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/plumed/plumedMDModule.cpp [809/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/update.cpp [810/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/disre.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/disre.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/disre.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/listed_forces/disre.cpp [811/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingforceprovider.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingforceprovider.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingforceprovider.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/densityfitting/densityfittingforceprovider.cpp [812/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarproxygromacs.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarproxygromacs.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarproxygromacs.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/colvars/colvarproxygromacs.cpp [813/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/manage_threading.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/manage_threading.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/manage_threading.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/listed_forces/manage_threading.cpp [814/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald_utils.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald_utils.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald_utils.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/ewald_utils.cpp [815/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/calculate_spline_moduli.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/calculate_spline_moduli.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/calculate_spline_moduli.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/calculate_spline_moduli.cpp [816/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/position_restraints.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/position_restraints.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/position_restraints.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/listed_forces/position_restraints.cpp [817/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmm.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmm.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmm.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/qmmm/qmmm.cpp [818/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarsMDModule.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarsMDModule.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarsMDModule.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/colvars/colvarsMDModule.cpp [819/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_gpu_buffer_ops.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_gpu_buffer_ops.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_gpu_buffer_ops.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/nbnxm_gpu_buffer_ops.cpp [820/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/nnpot/nnpot.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/nnpot/nnpot.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/nnpot/nnpot.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/nnpot/nnpot.cpp [821/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/long_range_correction.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/long_range_correction.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/long_range_correction.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/long_range_correction.cpp [822/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_program.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_program.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_program.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/pme_gpu_program.cpp [823/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_spline_work.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_spline_work.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_spline_work.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/pme_spline_work.cpp [824/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/pairs.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/pairs.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/pairs.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/listed_forces/pairs.cpp [825/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gather.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gather.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gather.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/pme_gather.cpp [826/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/listed_forces.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/listed_forces.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/listed_forces.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/listed_forces/listed_forces.cpp [827/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarsforceprovider.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarsforceprovider.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarsforceprovider.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/colvars/colvarsforceprovider.cpp [828/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/ewald.cpp [829/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vsite.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vsite.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vsite.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/vsite.cpp [830/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biasstate.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biasstate.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biasstate.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/awh/biasstate.cpp [831/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_pp_comm_gpu_impl.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_pp_comm_gpu_impl.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_pp_comm_gpu_impl.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/pme_pp_comm_gpu_impl.cpp [832/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_force_sender_gpu_impl.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_force_sender_gpu_impl.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_force_sender_gpu_impl.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/pme_force_sender_gpu_impl.cpp [833/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_coordinate_receiver_gpu_impl.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_coordinate_receiver_gpu_impl.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_coordinate_receiver_gpu_impl.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/pme_coordinate_receiver_gpu_impl.cpp [834/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fft/binary_information.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fft/binary_information.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fft/binary_information.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fft/binary_information.cpp [835/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/orires.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/orires.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/orires.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/listed_forces/orires.cpp [836/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_pp.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_pp.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_pp.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/pme_pp.cpp [837/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingoptions.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingoptions.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingoptions.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/densityfitting/densityfittingoptions.cpp [838/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/plumed/plumedforceprovider.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/plumed/plumedforceprovider.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/plumed/plumedforceprovider.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/plumed/plumedforceprovider.cpp [839/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_redistribute.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_redistribute.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_redistribute.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/pme_redistribute.cpp [840/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fft/fft.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fft/fft.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fft/fft.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fft/fft.cpp [841/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_ocl_stubs.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_ocl_stubs.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_ocl_stubs.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/pme_gpu_ocl_stubs.cpp [842/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_program_impl_ocl.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_program_impl_ocl.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_program_impl_ocl.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/pme_gpu_program_impl_ocl.cpp [843/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpueventsynchronizer_helpers.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpueventsynchronizer_helpers.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpueventsynchronizer_helpers.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gpu_utils/gpueventsynchronizer_helpers.cpp [844/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fft/calcgrid.cpp [845/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/binary_information.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/binary_information.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/binary_information.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gpu_utils/binary_information.cpp [846/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/pmalloc.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/pmalloc.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/pmalloc.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gpu_utils/pmalloc.cpp [847/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gpu_utils/gpu_utils.cpp [848/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_grid.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_grid.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_grid.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/pme_grid.cpp [849/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fft/parallel_3dfft.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fft/parallel_3dfft.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fft/parallel_3dfft.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fft/parallel_3dfft.cpp [850/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/device_stream_manager.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/device_stream_manager.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/device_stream_manager.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gpu_utils/device_stream_manager.cpp [851/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/clfftinitializer.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/clfftinitializer.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/clfftinitializer.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gpu_utils/clfftinitializer.cpp [852/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fft/gpu_3dfft.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fft/gpu_3dfft.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fft/gpu_3dfft.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fft/gpu_3dfft.cpp [853/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fft/gpu_3dfft_impl.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fft/gpu_3dfft_impl.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fft/gpu_3dfft_impl.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fft/gpu_3dfft_impl.cpp [854/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/nvshmem_manager.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/nvshmem_manager.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/nvshmem_manager.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gpu_utils/nvshmem_manager.cpp [855/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_load_balancing.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_load_balancing.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_load_balancing.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/pme_load_balancing.cpp [856/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_timings.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_timings.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_timings.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/pme_gpu_timings.cpp [857/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils_impl.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils_impl.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils_impl.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gpu_utils/gpu_utils_impl.cpp [858/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fft/fft_fftw3.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fft/fft_fftw3.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fft/fft_fftw3.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fft/fft_fftw3.cpp [859/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fft/gpu_3dfft_ocl.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fft/gpu_3dfft_ocl.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fft/gpu_3dfft_ocl.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fft/gpu_3dfft_ocl.cpp [860/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarsoptions.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarsoptions.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarsoptions.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/colvars/colvarsoptions.cpp [861/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/hostallocator.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/hostallocator.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/hostallocator.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gpu_utils/hostallocator.cpp [862/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_spread.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_spread.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_spread.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/pme_spread.cpp [863/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/pme_gpu.cpp [864/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/hardware/identifyavx512fmaunits.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/hardware/identifyavx512fmaunits.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/hardware/identifyavx512fmaunits.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/hardware/identifyavx512fmaunits.cpp [865/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fft/fft5d.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fft/fft5d.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fft/fft5d.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fft/fft5d.cpp [866/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_solve.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_solve.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_solve.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/pme_solve.cpp [867/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/device_context_ocl.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/device_context_ocl.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/device_context_ocl.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gpu_utils/device_context_ocl.cpp [868/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_gpu_data_mgmt.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_gpu_data_mgmt.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_gpu_data_mgmt.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/nbnxm_gpu_data_mgmt.cpp [869/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/device_stream_ocl.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/device_stream_ocl.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/device_stream_ocl.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gpu_utils/device_stream_ocl.cpp [870/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/oclutils.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/oclutils.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/oclutils.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gpu_utils/oclutils.cpp [871/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/legacymdrunoptions.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrun/legacymdrunoptions.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/legacymdrunoptions.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/legacymdrunoptions.cpp [872/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/legacysimulator.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrun/legacysimulator.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/legacysimulator.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/legacysimulator.cpp [873/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -DGMX_SIMD_ENUM_VALUE="gmx::SimdType::Arm_NeonAsimd" -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/hardware/simd_support.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/hardware/simd_support.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/hardware/simd_support.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/hardware/simd_support.cpp [874/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/ocl_caching.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/ocl_caching.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/ocl_caching.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gpu_utils/ocl_caching.cpp [875/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/nnpot/nnpotoptions.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/nnpot/nnpotoptions.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/nnpot/nnpotoptions.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/nnpot/nnpotoptions.cpp [876/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_only.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_only.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_only.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/pme_only.cpp [877/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/bonded.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/bonded.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/bonded.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/listed_forces/bonded.cpp [878/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/hardware/device_management_common.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/hardware/device_management_common.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/hardware/device_management_common.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/hardware/device_management_common.cpp [879/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/membedholder.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrun/membedholder.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/membedholder.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/membedholder.cpp [880/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationcontext.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationcontext.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationcontext.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/simulationcontext.cpp [881/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/hardware/detecthardware.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/hardware/detecthardware.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/hardware/detecthardware.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/hardware/detecthardware.cpp [882/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/hardware/device_management_ocl.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/hardware/device_management_ocl.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/hardware/device_management_ocl.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/hardware/device_management_ocl.cpp [883/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion-gen.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion-gen.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion-gen.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/gromacs/utility/baseversion-gen.cpp [884/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/freeenergy.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/freeenergy.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/freeenergy.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrunutility/freeenergy.cpp [885/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationinputhandle.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationinputhandle.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationinputhandle.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/simulationinputhandle.cpp [886/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/print_validation.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/print_validation.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/print_validation.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrunutility/print_validation.cpp [887/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmoptions.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmoptions.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmoptions.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/qmmm/qmmmoptions.cpp [888/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/hardware/printhardware.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/hardware/printhardware.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/hardware/printhardware.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/hardware/printhardware.cpp [889/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/ocl_compiler.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/ocl_compiler.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/ocl_compiler.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gpu_utils/ocl_compiler.cpp [890/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/printtime.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/printtime.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/printtime.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrunutility/printtime.cpp [891/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/logging.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/logging.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/logging.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrunutility/logging.cpp [892/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/mdmodulesnotifiers.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/mdmodulesnotifiers.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/mdmodulesnotifiers.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrunutility/mdmodulesnotifiers.cpp [893/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationinput.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationinput.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationinput.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/simulationinput.cpp [894/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/plainpairlistranges.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/plainpairlistranges.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/plainpairlistranges.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrunutility/plainpairlistranges.cpp [895/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/binary_information.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrun/binary_information.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/binary_information.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/binary_information.cpp [896/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/hardware/cpuinfo.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/hardware/cpuinfo.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/hardware/cpuinfo.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/hardware/cpuinfo.cpp [897/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/replicaexchange.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrun/replicaexchange.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/replicaexchange.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/replicaexchange.cpp [898/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/md5.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/md5.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/md5.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/md5.cpp [899/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/filetypes.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/filetypes.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/filetypes.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/filetypes.cpp [900/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/multisim.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/multisim.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/multisim.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrunutility/multisim.cpp [901/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/espio.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/espio.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/espio.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/espio.cpp [902/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/gmxfio.cpp [903/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/confio.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/confio.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/confio.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/confio.cpp [904/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/g96io.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/g96io.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/g96io.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/g96io.cpp [905/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio_xdr.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio_xdr.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio_xdr.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/gmxfio_xdr.cpp [906/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulatorbuilder.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulatorbuilder.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulatorbuilder.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/simulatorbuilder.cpp [907/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/mimic.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrun/mimic.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/mimic.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/mimic.cpp [908/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/oenv.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/oenv.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/oenv.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/oenv.cpp [909/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/mrcserializer.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/mrcserializer.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/mrcserializer.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/mrcserializer.cpp [910/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/mrcdensitymapheader.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/mrcdensitymapheader.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/mrcdensitymapheader.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/mrcdensitymapheader.cpp [911/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/mtxio.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/mtxio.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/mtxio.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/mtxio.cpp [912/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/libxdrf.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/libxdrf.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/libxdrf.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/libxdrf.cpp [913/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/rerun.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrun/rerun.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/rerun.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/rerun.cpp [914/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/handlerestart.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/handlerestart.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/handlerestart.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrunutility/handlerestart.cpp [915/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/groio.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/groio.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/groio.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/groio.cpp [916/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/timecontrol.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/timecontrol.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/timecontrol.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/timecontrol.cpp [917/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/pme.cpp [918/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_internal.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_internal.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_internal.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/pme_gpu_internal.cpp [919/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/mdmodules.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrun/mdmodules.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/mdmodules.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/mdmodules.cpp [920/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/enxio.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/enxio.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/enxio.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/enxio.cpp [921/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/threadaffinity.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/threadaffinity.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/threadaffinity.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrunutility/threadaffinity.cpp [922/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/hardware/hardwaretopology.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/hardware/hardwaretopology.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/hardware/hardwaretopology.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/hardware/hardwaretopology.cpp [923/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/warninp.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/warninp.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/warninp.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/warninp.cpp [924/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/state_propagator_data_gpu_impl_gpu.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/state_propagator_data_gpu_impl_gpu.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/state_propagator_data_gpu_impl_gpu.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdtypes/state_propagator_data_gpu_impl_gpu.cpp [925/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/xdrd.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/xdrd.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/xdrd.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/xdrd.cpp [926/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/mrcdensitymap.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/mrcdensitymap.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/mrcdensitymap.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/mrcdensitymap.cpp [927/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/trrio.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/trrio.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/trrio.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/trrio.cpp [928/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/xtcio.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/xtcio.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/xtcio.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/xtcio.cpp [929/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/writeps.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/writeps.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/writeps.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/writeps.cpp [930/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/shellfc.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrun/shellfc.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/shellfc.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/shellfc.cpp [931/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/mempool.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/mempool.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/mempool.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/mempool.cpp [932/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/centerofmass.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/centerofmass.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/centerofmass.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/centerofmass.cpp [933/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/position.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/position.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/position.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/position.cpp [934/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/xdr_serializer.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/xdr_serializer.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/xdr_serializer.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/xdr_serializer.cpp [935/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/pdbio.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/pdbio.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/pdbio.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/pdbio.cpp [936/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/trxio.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/trxio.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/trxio.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/trxio.cpp [937/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/selmethod.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/selmethod.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/selmethod.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/selmethod.cpp [938/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/selvalue.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/selvalue.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/selvalue.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/selvalue.cpp [939/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/tngio.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/tngio.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/tngio.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/tngio.cpp [940/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/xvgr.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/xvgr.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/xvgr.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/xvgr.cpp [941/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/poscalc.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/poscalc.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/poscalc.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/poscalc.cpp [942/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoptionbehavior.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoptionbehavior.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoptionbehavior.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/selectionoptionbehavior.cpp [943/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/evaluate.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/evaluate.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/evaluate.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/evaluate.cpp [944/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/scanner_internal.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/scanner_internal.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/scanner_internal.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/scanner_internal.cpp [945/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_distance.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_distance.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_distance.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/sm_distance.cpp [946/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_compare.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_compare.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_compare.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/sm_compare.cpp [947/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/selection.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/selection.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/selection.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/selection.cpp [948/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/tpi.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrun/tpi.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/tpi.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/tpi.cpp /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/tpi.cpp: In member function ‘std::pair gmx::TestParticleInsertion::performSingleInsertion(double, int64_t, bool, const gmx::RVec&, t_state*, gmx::MdrunScheduleWorkload*, gmx_wallcycle*, t_nrnb*)’: /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/tpi.cpp:497:85: note: parameter passing for argument of type ‘std::pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 497 | t_nrnb* nrnb) | ^ [949/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/nbsearch.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/nbsearch.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/nbsearch.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/nbsearch.cpp [950/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoptionmanager.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoptionmanager.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoptionmanager.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/selectionoptionmanager.cpp [951/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_position.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_position.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_position.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/sm_position.cpp [952/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/selhelp.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/selhelp.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/selhelp.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/selhelp.cpp [953/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_merge.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_merge.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_merge.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/sm_merge.cpp [954/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_insolidangle.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_insolidangle.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_insolidangle.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/sm_insolidangle.cpp [955/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_permute.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_permute.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_permute.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/sm_permute.cpp [956/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/minimize.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrun/minimize.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/minimize.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/minimize.cpp [957/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/readinp.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/readinp.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/readinp.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/readinp.cpp [958/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/selelem.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/selelem.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/selelem.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/selelem.cpp [959/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/md.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrun/md.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/md.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/md.cpp [960/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/indexutil.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/indexutil.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/indexutil.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/indexutil.cpp [961/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoption.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoption.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoption.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/selectionoption.cpp [962/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_same.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_same.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_same.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/sm_same.cpp [963/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fopenmp -MD -MT share/template/CMakeFiles/template.dir/template.cpp.o -MF share/template/CMakeFiles/template.dir/template.cpp.o.d -o share/template/CMakeFiles/template.dir/template.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/share/template/template.cpp [964/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/symrec.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/symrec.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/symrec.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/symrec.cpp [965/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_simple.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_simple.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_simple.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/sm_simple.cpp [966/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/parsetree.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/parsetree.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/parsetree.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/parsetree.cpp [967/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/selectioncollection.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/selectioncollection.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/selectioncollection.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/selectioncollection.cpp [968/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/params.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/params.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/params.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/params.cpp [969/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/compiler.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/compiler.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/compiler.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/compiler.cpp [970/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/checkpoint.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/checkpoint.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/checkpoint.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/checkpoint.cpp [971/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/runner.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrun/runner.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/runner.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/runner.cpp [972/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/tpxio.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/tpxio.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/tpxio.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/tpxio.cpp [973/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/matio.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/matio.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/matio.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/matio.cpp [974/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_keywords.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_keywords.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_keywords.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/sm_keywords.cpp [975/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/freeenergykernel.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/freeenergykernel.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/freeenergykernel.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/freeenergykernel.cpp [976/978] : && /usr/bin/cmake -E rm -f lib/libgromacs_openmpi.a && /usr/bin/ar qc lib/libgromacs_openmpi.a src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o src/gromacs/selection/CMakeFiles/scanner.dir/parser.cpp.o src/gromacs/selection/CMakeFiles/scanner.dir/scanner.cpp.o src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/accessors.cpp.o src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/action.transpose.cpp.o src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/enqueue.cpp.o src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/fft_binary_lookup.cpp.o src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.copy.cpp.o src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.stockham.cpp.o src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.transpose.cpp.o src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.transpose.gcn.cpp.o src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/lifetime.cpp.o src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/md5sum.cpp.o src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/plan.cpp.o src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/repo.cpp.o src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/stdafx.cpp.o src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/transform.cpp.o src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.CPU.cpp.o src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.GPU.cpp.o src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.extern.cpp.o src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/stdafx.cpp.o src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr.cpp.o src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr_array.cpp.o src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr_float.cpp.o src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr_stdio.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar_neuralnetworkcompute.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvaratoms.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abf.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abmd.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_alb.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram_reweight_amd.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_meta.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_opes.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_restraint.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_alchlambda.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_angles.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_apath.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_combination.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_coordnums.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_distances.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_gpath.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_neuralnetwork.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_protein.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_rotations.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_torchann.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_volmaps.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvardeps.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid_integrate.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarmodule.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparams.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparse.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_io.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_replicas.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_system.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_tcl.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_volmaps.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvars_memstream.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_bias.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_colvar.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvartypes.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarvalue.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/nr_jacobi.cpp.o src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/energyterm.cpp.o src/gromacs/fmm/CMakeFiles/fmm.dir/fmm_mdmodule.cpp.o src/gromacs/fmm/CMakeFiles/fmm.dir/fmm_mdpoptions.cpp.o src/gromacs/fmm/CMakeFiles/fmm.dir/fmm_mdpvalidator.cpp.o src/gromacs/fmm/CMakeFiles/fmm.dir/fmmforceproviderbuilder.cpp.o src/gromacs/fmm/CMakeFiles/fmm.dir/fmmoptions.cpp.o src/gromacs/fmm/CMakeFiles/fmm.dir/fmmforceprovider_stub.cpp.o src/gromacs/fileio/h5md/CMakeFiles/h5md.dir/h5md.cpp.o src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/binary_information.cpp.o src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/eigensolver.cpp.o src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/matrix.cpp.o src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/andersentemperaturecoupling.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/constraintelement.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/domdechelper.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/energydata.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/expandedensembleelement.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/firstorderpressurecoupling.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/forceelement.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/freeenergyperturbationdata.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/modularsimulator.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/mttk.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/nosehooverchains.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/pmeloadbalancehelper.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/propagator.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/pullelement.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/referencetemperaturemanager.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/signallers.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/simulatoralgorithm.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/topologyholder.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/velocityscalingtemperaturecoupling.cpp.o src/gromacs/options/CMakeFiles/options.dir/abstractoption.cpp.o src/gromacs/options/CMakeFiles/options.dir/abstractsection.cpp.o src/gromacs/options/CMakeFiles/options.dir/basicoptions.cpp.o src/gromacs/options/CMakeFiles/options.dir/behaviorcollection.cpp.o src/gromacs/options/CMakeFiles/options.dir/filenameoption.cpp.o src/gromacs/options/CMakeFiles/options.dir/filenameoptionmanager.cpp.o src/gromacs/options/CMakeFiles/options.dir/options.cpp.o src/gromacs/options/CMakeFiles/options.dir/optionsassigner.cpp.o src/gromacs/options/CMakeFiles/options.dir/optionsection.cpp.o src/gromacs/options/CMakeFiles/options.dir/optionsvisitor.cpp.o src/gromacs/options/CMakeFiles/options.dir/timeunitmanager.cpp.o src/gromacs/options/CMakeFiles/options.dir/treesupport.cpp.o src/gromacs/pulling/CMakeFiles/pulling.dir/output.cpp.o src/gromacs/pulling/CMakeFiles/pulling.dir/pull.cpp.o src/gromacs/pulling/CMakeFiles/pulling.dir/pull_rotation.cpp.o src/gromacs/pulling/CMakeFiles/pulling.dir/pullcoordexpressionparser.cpp.o src/gromacs/pulling/CMakeFiles/pulling.dir/pullutil.cpp.o src/gromacs/pulling/CMakeFiles/pulling.dir/transformationcoordinate.cpp.o src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/decidegpuusage.cpp.o src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/decidesimulationworkload.cpp.o src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/findallgputasks.cpp.o src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/reportgpuusage.cpp.o src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/resourcedivision.cpp.o src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/taskassignment.cpp.o src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/usergpuids.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/any.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/basenetwork.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/booltype.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/compare.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/coolstuff.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/cstringutil.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/datafilefinder.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/directoryenumerator.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/errorcodes.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/errorformat.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/exceptions.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/fatalerror.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/fileredirector.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/filestream.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/futil.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxassert.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxomp.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/ikeyvaluetreeerror.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/init.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/int64_to_int.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetree.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreemdpwriter.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreetransform.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/logger.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/loggerbuilder.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/message_string_collector.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/mpicomm.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/mpiinfo.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/niceheader.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/path.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/physicalnodecommunicator.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/pleasecite.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/programcontext.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/smalloc.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/strconvert.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/strdb.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/stringstream.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/stringutil.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/sysinfo.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/textreader.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/veccompare.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/vecdump.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/atomdata.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_setup.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_system.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/exclusionchecker.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/freeenergydispatch.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/freeenergykernel.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/grid.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/gridset.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernel_common.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kerneldispatch.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_gpu_ref.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_1x1.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_4x4.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_prune.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_geometry.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_setup.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist_simd_kernel.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist_tuning.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistparams.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistset.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistsets.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistwork.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairsearch.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/prunekerneldispatch.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/simd_energy_accumulator.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/simd_prune_kernel.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_gpu_buffer_ops_internal_ocl.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl_data_mgmt.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl_jit_support.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpwriter.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineinit.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodule.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodulemanager.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodulesettings.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineoptionsmodule.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/commandline/filenm.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/commandline/pargs.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/commandline/shellcompletions.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/commandline/viewit.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/atomdistribution.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/box.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/cellsizes.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/collect.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/computemultibodycutoffs.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/distribute.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlb.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/domainpaircomm.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_zones.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/dump.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/haloexchange.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/haloexchangesetup.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomset.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetdata.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetmanager.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/localtopology.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/localtopologychecker.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/makebondedlinks.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/mdsetup.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/nsgrid.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/partition.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/reversetopology.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/utility.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/gpuhaloexchange_impl.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/math/coordinatetransformation.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/math/densityfit.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/math/densityfittingforce.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/math/do_fit.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/math/exponentialmovingaverage.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/math/functions.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/math/gausstransform.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/math/invertmatrix.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/math/neldermead.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/math/nrjac.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/math/optimization.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/math/utilities.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/awh_history.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/checkpointdata.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/commrec.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/df_history.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/energyhistory.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/forcebuffers.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/group.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/iforceprovider.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/inputrec.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/interaction_const.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/md_enums.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/multipletimestepping.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/observableshistory.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/observablesreducer.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/state.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/threaded_force_buffer.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpformat.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helptopic.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpwritercontext.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/rstparser.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/boxutilities.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/com.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/mshift.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc_simd.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbcenums.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbcmethods.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/rmpbc.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/random/seed.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/random/tabulatednormaldistribution.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/restraint/manager.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/restraint/restraintmdmodule.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/serialization/inmemoryserializer.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/serialization/keyvaluetreeserializer.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/tables/cubicsplinetable.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/tables/forcetable.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/tables/quadraticsplinetable.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/tables/splineutil.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/timing/cyclecounter.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/timing/external_tracing.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/timing/wallcycle.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/timing/walltime_accounting.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/topology/atomprop.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/topology/atoms.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/topology/atomsbuilder.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/topology/block.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/topology/embedded_system_preprocessing.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/topology/exclusionblocks.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/topology/forcefieldparameters.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/topology/idef.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/topology/ifunc.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/topology/index.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/topology/invblock.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/topology/mtop_atomloops.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/topology/mtop_util.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/topology/residuetypes.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/topology/symtab.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/topology/topology.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/topology/topsort.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectory/energyframe.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectory/trajectoryframe.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/swap/swapcoords.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/essentialdynamics/edsam.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/imd/imd.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/imd/imdsocket.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mimic/communicator_stub.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mimic/utilities.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/anadih.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/angle_correction.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/binsearch.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/cluster_methods.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/cmat.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/dens_filter.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/dlist.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/eigio.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/fitahx.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_anaeig.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_analyze.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_angle.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_awh.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_bar.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_bundle.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_chi.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_cluster.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_clustsize.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_confrms.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_covar.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_current.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_density.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_densmap.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_densorder.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dielectric.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dipoles.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_disre.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dos.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dyecoupl.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_enemat.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_energy.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_filter.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_gyrate.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_h2order.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_hbond.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_helix.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_helixorient.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_hydorder.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_lie.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_make_edi.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_mdmat.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_mindist.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmeig.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmens.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmr.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmtraj.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_order.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_polystat.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_potential.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_principal.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rama.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rms.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rmsdist.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rmsf.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rotacf.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rotmat.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_saltbr.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sans.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_saxs.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sham.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sigeps.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sorient.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_spatial.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_spol.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_tcaf.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_traj.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_trjorder.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_vanhove.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_velacc.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_wham.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_wheel.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_xpm2ps.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/hxprops.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/nrama.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/nsfactor.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/powerspect.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/pp2shift.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/princ.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/sfactor.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/thermochemistry.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/add_par.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/calch.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/compute_io.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/convparm.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/editconf.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/fflibutil.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_ad.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_maxwell_velocities.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_vsite.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genconf.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genhydro.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genion.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genrestr.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gmxcpp.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_atomtype.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_bond_atomtype.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_nextnb.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/grompp.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/h_db.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/hackblock.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/hizzie.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/insert_molecules.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/makeexclusiondistances.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/massrepartitioning.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/nm2type.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2gmx.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2top.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pgutil.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readir.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readpull.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readrot.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/resall.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/solvate.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/specbond.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/ter_db.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/tomorse.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topdirs.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topio.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/toppush.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topshake.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/toputil.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/vsite_parm.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/x2top.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/xlate.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/autocorr.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/crosscorr.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/expfit.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/gmx_lmcurve.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/integrate.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/manyautocorrelation.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/polynomials.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/statistics/statistics.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/abstractdata.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/analysisdata.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/arraydata.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/dataframe.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datamodule.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datamodulemanager.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/dataproxy.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datastorage.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/average.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/displacement.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/frameaverager.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/histogram.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/lifetime.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/plot.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/coordinatefile.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/frameconverters/register.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadaptercontainer.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/outputselector.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setatoms.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setforces.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setprecision.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setstarttime.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/settimestep.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setvelocities.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/requirements.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/analysismodule.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/analysissettings.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/cmdlinerunner.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/angle.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/convert_trj.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/distance.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/dssp.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/extract_cluster.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/freevolume.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/gyrate.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/hbond.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/isotope.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/msd.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/pairdist.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/rdf.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/sasa.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering-debye-sans.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering-debye-saxs.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering-debye.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scatteringfactors.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/select.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/surfacearea.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/trajectory.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/runnercommon.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/topologyinformation.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/tools/check.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/tools/convert_tpr.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/tools/dump.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/tools/eneconv.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/tools/make_ndx.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/tools/mk_angndx.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/tools/pme_error.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/tools/report_methods.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/tools/trjcat.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/tools/trjconv.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/tools/tune_pme.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/conformation_utilities.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/network.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nrnb.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/boxdeformation.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/broadcaststructs.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calc_verletbuf.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calcmu.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calcvir.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/checkpointhandler.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constr.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constraint_gpu_helpers.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constraintrange.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/coupling.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/dispersioncorrection.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/ebin.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/enerdata_utils.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/energydrifttracker.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/energyoutput.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/expanded.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/expanded_internal.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/force.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/freeenergyparameters.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/gmx_omp_nthreads.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/lincs_constraint_group_sizes.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/md_support.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdatoms.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdgraph_gpu_impl.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/membed.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/resethandler.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rf_util.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/settle.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/shake.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sighandler.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sim_util.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/simulationsignal.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/splitter.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stat.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stophandler.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/tgroup.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update_vv.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroups.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroupscog.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vcm.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vsite.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wholemoleculetransform.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/gpuforcereduction_impl_stubs.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update_constrain_gpu_impl_stubs.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/electricfield.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/awh.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/bias.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biasgrid.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biasparams.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biassharing.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biasstate.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biaswriter.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/coordstate.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/correlationgrid.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/correlationhistory.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/correlationtensor.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/histogramsize.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/pointstate.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/read_params.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfitting.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingamplitudelookup.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingforceprovider.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingoptions.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingoutputprovider.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingparameters.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmminputgenerator.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmforceproviderstate.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmoptions.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmm.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmforceprovider_stub.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarsMDModule.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarsoptions.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarspreprocessor.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarssimulationsparameters.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarsforceprovider.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarproxygromacs.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/plumed/plumedforceprovider.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/plumed/plumedOptions.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/plumed/plumedMDModule.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/nnpot/binary_information.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/nnpot/nnpotoptions.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/nnpot/nnpot.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/nnpot/nnpotforceprovider_stub.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/bonded.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/disre.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/listed_forces_gpu_impl.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/listed_forces.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/listed_internal.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/manage_threading.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/orires.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/pairs.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/position_restraints.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/restcbt.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_gpu_data_mgmt.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_gpu_buffer_ops.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/calculate_spline_moduli.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald_utils.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/long_range_correction.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gather.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_grid.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_load_balancing.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_only.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_pp.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_redistribute.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_solve.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_spline_work.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_spread.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_program.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_program_impl_ocl.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_ocl_stubs.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_pp_comm_gpu_impl.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_coordinate_receiver_gpu_impl.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_force_sender_gpu_impl.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_internal.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_timings.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fft/binary_information.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fft/fft.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fft/fft5d.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fft/parallel_3dfft.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fft/fft_fftw3.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fft/gpu_3dfft_ocl.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fft/gpu_3dfft_impl.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fft/gpu_3dfft.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/binary_information.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/clfftinitializer.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/device_stream_manager.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpueventsynchronizer_helpers.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/hostallocator.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/nvshmem_manager.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/device_context_ocl.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/device_stream_ocl.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils_impl.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/pmalloc.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/ocl_compiler.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/ocl_caching.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/oclutils.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/hardware/cpuinfo.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/hardware/detecthardware.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/hardware/device_management_common.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/hardware/hardwaretopology.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/hardware/printhardware.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/hardware/identifyavx512fmaunits.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/hardware/simd_support.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/hardware/device_management_ocl.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/binary_information.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/legacymdrunoptions.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/legacysimulator.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/md.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/mdmodules.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/membedholder.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/mimic.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/minimize.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/replicaexchange.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/rerun.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/runner.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/shellfc.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationcontext.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationinput.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationinputhandle.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulatorbuilder.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/tpi.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/freeenergy.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/handlerestart.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/logging.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/mdmodulesnotifiers.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/multisim.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/plainpairlistranges.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/print_validation.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/printtime.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/threadaffinity.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/state_propagator_data_gpu_impl_gpu.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion-gen.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/checkpoint.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/confio.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/enxio.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/espio.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/filetypes.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/g96io.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio_xdr.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/groio.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/libxdrf.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/matio.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/md5.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/mrcdensitymap.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/mrcdensitymapheader.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/mrcserializer.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/mtxio.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/oenv.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/pdbio.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/readinp.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/timecontrol.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/tngio.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/tpxio.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/trrio.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/trxio.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/warninp.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/writeps.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/xdr_serializer.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/xdrd.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/xtcio.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/xvgr.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/centerofmass.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/compiler.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/evaluate.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/indexutil.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/mempool.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/nbsearch.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/params.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/parsetree.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/poscalc.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/position.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/scanner_internal.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/selection.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/selectioncollection.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoption.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoptionbehavior.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoptionmanager.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/selelem.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/selhelp.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/selmethod.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/selvalue.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_compare.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_distance.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_insolidangle.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_keywords.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_merge.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_permute.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_position.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_same.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_simple.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/symrec.cpp.o && /usr/bin/ranlib lib/libgromacs_openmpi.a && : [977/978] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,--dependency-file=share/template/CMakeFiles/template.dir/link.d share/template/CMakeFiles/template.dir/template.cpp.o -o bin/template -Wl,-rpath,/usr/lib64/openmpi/lib lib/libgromacs_openmpi.a /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib64/openmpi/lib/libmpi.so /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl && : [978/978] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,--dependency-file=src/programs/CMakeFiles/gmx.dir/link.d src/programs/CMakeFiles/gmx_objlib.dir/gmx.cpp.o src/programs/CMakeFiles/gmx_objlib.dir/legacymodules.cpp.o src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o bin/gmx_openmpi -Wl,-rpath,/usr/lib64/openmpi/lib: lib/libgromacs_openmpi.a /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib64/openmpi/lib/libmpi.so /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl && : In member function ‘performSingleInsertion’: lto1: note: parameter passing for argument of type ‘struct pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 + popd ~/build/BUILD/gromacs-2026.3-build/gromacs-2026.3 + test -n openmpi + module unload mpi/openmpi-aarch64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw unload mpi/openmpi-aarch64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh unload mpi/openmpi-aarch64 + eval $'unset MPI_COMPILER;\nunset LD_LIBRARY_PATH;\nunset MPI_MAN;\nMANPATH=\'/usr/share/man:\'; export MANPATH;\nunset MPI_INCLUDE;\nunset _LMFILES_;\nunset LOADEDMODULES;\nunset CMAKE_PREFIX_PATH;\nPKG_CONFIG_PATH=\':/usr/lib64/pkgconfig:/usr/share/pkgconfig\'; export PKG_CONFIG_PATH;\nunset MPI_PYTHON3_SITEARCH;\nunset MPI_HOME;\nunset MPI_FORTRAN_MOD_DIR;\nunset __MODULES_LMALTNAME;\nunset __MODULES_LMCONFLICT;\n__MODULES_SHARE_MANPATH=\':1\'; export __MODULES_SHARE_MANPATH;\nunset MPI_SUFFIX;\nunset MPI_SYSCONFIG;\n__MODULES_SHARE_PKG_CONFIG_PATH=\':1\'; export __MODULES_SHARE_PKG_CONFIG_PATH;\nunset MPI_LIB;\nPATH=\'/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin\'; export PATH;\nunset MPI_BIN;\ntest 0;' ++ unset MPI_COMPILER ++ unset LD_LIBRARY_PATH ++ unset MPI_MAN ++ MANPATH=/usr/share/man: ++ export MANPATH ++ unset MPI_INCLUDE ++ unset _LMFILES_ ++ unset LOADEDMODULES ++ unset CMAKE_PREFIX_PATH ++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_HOME ++ unset MPI_FORTRAN_MOD_DIR ++ unset __MODULES_LMALTNAME ++ unset __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:1 ++ export __MODULES_SHARE_MANPATH ++ unset MPI_SUFFIX ++ unset MPI_SYSCONFIG ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ unset MPI_LIB ++ PATH=/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin ++ export PATH ++ unset MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + for p in '' _d + for mpi in '' mpich openmpi + test -n '' + mkdir -p serial_d + pushd serial_d ~/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d ~/build/BUILD/gromacs-2026.3-build/gromacs-2026.3 + test -z '' + cp -al ../regressiontests-2026.3 tests/ + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX ++ test -n '' ++ test -z '' ++ echo -DREGRESSIONTEST_PATH=/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/tests ++ test -n _d ++ echo -DGMX_DOUBLE:BOOL=ON + /usr/bin/cmake -S .. -B redhat-linux-build -G Ninja -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DCMAKE_INSTALL_FULL_SBINDIR:PATH=/usr/bin -DCMAKE_INSTALL_SBINDIR:PATH=bin -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -DBUILD_TESTING:BOOL=ON -DCMAKE_SKIP_INSTALL_RPATH=ON -DGMX_BLAS_USER=flexiblas -DGMX_BUILD_UNITTESTS:BOOL=ON -DGMX_USE_LMFIT=EXTERNAL -DGMX_EXTERNAL_TNG:BOOL=ON -DGMX_EXTERNAL_TINYXML2:BOOL=OFF -DGMX_USE_MUPARSER=EXTERNAL -DGMX_LAPACK_USER=flexiblas -DGMX_USE_RDTSCP=OFF -DGMX_INSTALL_LEGACY_API=ON -DGMX_VERSION_STRING_OF_FORK=Fedora46 -DGMX_SIMD=ARM_NEON_ASIMD -DREGRESSIONTEST_PATH=/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/tests -DGMX_DOUBLE:BOOL=ON -- The C compiler identification is GNU 16.2.1 -- The CXX compiler identification is GNU 16.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Could NOT find Python3 (missing: Python3_INCLUDE_DIRS Python3_LIBRARIES Development Development.Module Development.Embed) (found suitable version "3.15.0", minimum required is "3.9") -- Found OpenMP_CXX: -fopenmp (found version "5.2") -- Found OpenMP: TRUE (found version "5.2") found components: CXX -- Performing Test CFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS -- Performing Test CFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS - Success -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS -- Performing Test CXXFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Looking for include file unistd.h -- Looking for include file unistd.h - found -- Looking for include file pwd.h -- Looking for include file pwd.h - found -- Looking for include file dirent.h -- Looking for include file dirent.h - found -- Looking for include file time.h -- Looking for include file time.h - found -- Looking for include file sys/time.h -- Looking for include file sys/time.h - found -- Looking for include file io.h -- Looking for include file io.h - not found -- Looking for include file sched.h -- Looking for include file sched.h - found -- Looking for include file xmmintrin.h -- Looking for include file xmmintrin.h - not found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for sysconf -- Looking for sysconf - found -- Looking for nice -- Looking for nice - found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sigaction -- Looking for sigaction - found -- Performing Test HAVE_BUILTIN_CLZ -- Performing Test HAVE_BUILTIN_CLZ - Success -- Performing Test HAVE_BUILTIN_CLZLL -- Performing Test HAVE_BUILTIN_CLZLL - Success -- Looking for clock_gettime in rt -- Looking for clock_gettime in rt - found -- Looking for feenableexcept in m -- Looking for feenableexcept in m - found -- Looking for fedisableexcept in m -- Looking for fedisableexcept in m - found -- Checking for sched.h GNU affinity API -- Performing Test sched_affinity_compile -- Performing Test sched_affinity_compile - Success -- Looking for include file mm_malloc.h -- Looking for include file mm_malloc.h - not found -- Looking for include file malloc.h -- Looking for include file malloc.h - found -- Checking for _mm_malloc() -- Checking for _mm_malloc() - not supported -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - not found -- GROMACS is being built without library MPI support (-DGMX_MPI=no). However MPI is potentially useful for the gmxapi Python API, so we will search for MPI anyway. If this causes problems, disable the check with -DCMAKE_DISABLE_FIND_PACKAGE_MPI=on. -- Checking for module 'mpi-cxx' -- Package 'mpi-cxx' not found -- Could NOT find MPI_CXX (missing: MPI_CXX_LIB_NAMES MPI_CXX_HEADER_DIR MPI_CXX_WORKS) -- Could NOT find MPI (missing: MPI_CXX_FOUND CXX) -- Performing Test HAS_WARNING_NO_OLD_STYLE_CAST -- Performing Test HAS_WARNING_NO_OLD_STYLE_CAST - Success -- Performing Test HAS_WARNING_NO_CAST_QUAL -- Performing Test HAS_WARNING_NO_CAST_QUAL - Success -- Performing Test HAS_WARNING_NO_SUGGEST_OVERRIDE -- Performing Test HAS_WARNING_NO_SUGGEST_OVERRIDE - Success -- Performing Test HAS_WARNING_NO_SUGGEST_DESTRUCTOR_OVERRIDE -- Performing Test HAS_WARNING_NO_SUGGEST_DESTRUCTOR_OVERRIDE - Success -- Performing Test HAS_WARNING_NO_ZERO_AS_NULL_POINTER_CONSTANT -- Performing Test HAS_WARNING_NO_ZERO_AS_NULL_POINTER_CONSTANT - Success -- Using default binary suffix: "_d" -- Using default library suffix: "_d" -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Looking for C++ include pthread.h -- Looking for C++ include pthread.h - found -- Performing Test TEST_ATOMICS -- Performing Test TEST_ATOMICS - Success -- Atomic operations found -- Performing Test PTHREAD_SETAFFINITY -- Performing Test PTHREAD_SETAFFINITY - Success -- Performing Test C_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS -- Performing Test C_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS - Success -- Performing Test CXX_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS -- Performing Test CXX_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS - Success -- Enabling ARM (AArch64) NEON Advanced SIMD instructions using CXX flags: -- Performing Test _callconv___vectorcall -- Performing Test _callconv___vectorcall - Failed -- Performing Test _callconv___regcall -- Performing Test _callconv___regcall - Failed -- Performing Test _callconv_ -- Performing Test _callconv_ - Success -- Torch not found. Neural network potential support will be disabled. -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - not supported -- Detected build CPU vendor - ARM -- Detected build CPU brand - 0xd40 -- Detected build CPU family - 8 -- Detected build CPU model - 1 -- Detected build CPU stepping - 1 -- Detected build CPU features - neon neon_asimd sve -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present -- Checking for fseeko/ftello -- Checking for fseeko/ftello - present -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for pipe support -- Checking for system XDR support -- Checking for system XDR support - not present -- Checking for module 'fftw3' -- Found fftw3, version 3.3.10 -- Looking for fftw_plan_many_dft in /usr/lib64/libfftw3.so -- Looking for fftw_plan_many_dft in /usr/lib64/libfftw3.so - found -- Looking for fftw_plan_many_dft_r2c in /usr/lib64/libfftw3.so -- Looking for fftw_plan_many_dft_r2c in /usr/lib64/libfftw3.so - found -- Looking for fftw_plan_many_dft_c2r in /usr/lib64/libfftw3.so -- Looking for fftw_plan_many_dft_c2r in /usr/lib64/libfftw3.so - found -- Looking for fftw_have_simd_sse in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_sse in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_sse in /usr/lib64/libfftw3.so -- Looking for fftw_have_sse in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_sse2 in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_sse2 in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_sse2 in /usr/lib64/libfftw3.so -- Looking for fftw_have_sse2 in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_avx in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_avx in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_avx2 in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_avx2 in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_avx2_128 in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_avx2_128 in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_avx512 in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_avx512 in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_avx_128_fma in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_avx_128_fma in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_avx_512 in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_avx_512 in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_kcvi in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_kcvi in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_altivec in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_altivec in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_neon in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_neon in /usr/lib64/libfftw3.so - found -- Using external FFT library - FFTW3 -- Checking that user BLAS library flexiblas works -- Looking for dgemm_ -- Looking for dgemm_ - found -- Checking that user LAPACK library flexiblas works -- Looking for cheev_ -- Looking for cheev_ - found -- No image conversion possible without ImageMagick -- Performing Test HAS_WARNING_EVERYTHING -- Performing Test HAS_WARNING_EVERYTHING - Failed -- Performing Test HAVE_NO_DEPRECATED_COPY -- Performing Test HAVE_NO_DEPRECATED_COPY - Success -- Looking for open_memstream -- Looking for open_memstream - found -- Looking for dlopen -- Looking for dlopen - found -- Performing Test HAS_NO_STRINGOP_TRUNCATION -- Performing Test HAS_NO_STRINGOP_TRUNCATION - Success -- Could NOT find HDF5 (missing: HDF5_LIBRARIES HDF5_INCLUDE_DIRS C) (Required is at least version "1.10.7") -- Performing Test HAS_WARNING_NO_CAST_FUNCTION_TYPE_STRICT -- Performing Test HAS_WARNING_NO_CAST_FUNCTION_TYPE_STRICT - Success -- Performing Test HAS_NO_UNUSED -- Performing Test HAS_NO_UNUSED - Success -- Performing Test HAS_NO_UNUSED_PARAMETER -- Performing Test HAS_NO_UNUSED_PARAMETER - Success -- Performing Test HAS_NO_MISSING_DECLARATIONS -- Performing Test HAS_NO_MISSING_DECLARATIONS - Success -- Performing Test HAS_NO_NULL_CONVERSIONS -- Performing Test HAS_NO_NULL_CONVERSIONS - Success -- Performing Test LMFIT_LINKS_OK -- Performing Test LMFIT_LINKS_OK - Success -- Found Lmfit: /usr/include (found suitable version "11.0.0", minimum required is "7.0") -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success -- Performing Test COMPILER_HAS_DEPRECATED_ATTR -- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success -- Could NOT find Sphinx (missing: SPHINX_EXECUTABLE pygments) (Required is at least version "4.0.0") -- Could NOT find LATEX (missing: LATEX_COMPILER) -- Configuring done (19.2s) -- Generating done (0.3s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_Fortran_FLAGS_RELEASE CMAKE_INSTALL_DO_STRIP CMAKE_VERBOSE_MAKEFILE INCLUDE_INSTALL_DIR LIB_INSTALL_DIR LIB_SUFFIX SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build + /usr/bin/cmake --build redhat-linux-build -j32 --verbose Change Dir: '/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build' Run Build Command(s): /usr/bin/ninja-build -v -j 32 [1/1006] cd /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3.15 -D PROJECT_VERSION=2026.3-Fedora46 -D PROJECT_SOURCE_DIR=/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3 -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Fedora46 -P /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/cmake/gmxGenerateVersionInfoWithoutGit.cmake [2/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o -MF src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o.d -o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/src/atomic.cpp [3/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -MD -MT src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr_float.cpp.o -MF src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr_float.cpp.o.d -o src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr_float.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/rpc_xdr/xdr_float.cpp /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/rpc_xdr/xdr_float.cpp: In function ‘bool_t xdr_double(XDR*, double*)’: /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/rpc_xdr/xdr_float.cpp:223:17: warning: unused variable ‘ip’ [-Wunused-variable] 223 | int* ip; | ^~ /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/rpc_xdr/xdr_float.cpp:224:17: warning: unused variable ‘tmp’ [-Wunused-variable] 224 | int32_t tmp[2]; | ^~~ [4/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -MD -MT src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr_array.cpp.o -MF src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr_array.cpp.o.d -o src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr_array.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/rpc_xdr/xdr_array.cpp [5/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/profile.cpp.o -MF src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/profile.cpp.o.d -o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/profile.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/src/profile.cpp [6/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/numa_malloc.cpp.o -MF src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/numa_malloc.cpp.o.d -o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/numa_malloc.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/src/numa_malloc.cpp [7/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -MF src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o.d -o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/src/tmpi_malloc.cpp [8/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o -MF src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o.d -o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/src/lock.cpp [9/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/barrier.cpp.o -MF src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/barrier.cpp.o.d -o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/barrier.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/src/barrier.cpp [10/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/event.cpp.o -MF src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/event.cpp.o.d -o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/event.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/src/event.cpp [11/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/bcast.cpp.o -MF src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/bcast.cpp.o.d -o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/bcast.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/src/bcast.cpp [12/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/list.cpp.o -MF src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/list.cpp.o.d -o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/list.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/src/list.cpp [13/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -MD -MT src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr_stdio.cpp.o -MF src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr_stdio.cpp.o.d -o src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr_stdio.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/rpc_xdr/xdr_stdio.cpp [14/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/scan.cpp.o -MF src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/scan.cpp.o.d -o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/scan.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/src/scan.cpp [15/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o -MF src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o.d -o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/src/errhandler.cpp [16/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/reduce_fast.cpp.o -MF src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/reduce_fast.cpp.o.d -o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/reduce_fast.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/src/reduce_fast.cpp [17/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/group.cpp.o -MF src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/group.cpp.o.d -o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/group.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/src/group.cpp [18/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_send_recv.cpp.o -MF src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_send_recv.cpp.o.d -o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_send_recv.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/src/p2p_send_recv.cpp [19/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/reduce.cpp.o -MF src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/reduce.cpp.o.d -o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/reduce.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/src/reduce.cpp [20/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/gather.cpp.o -MF src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/gather.cpp.o.d -o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/gather.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/src/gather.cpp [21/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/once.cpp.o -MF src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/once.cpp.o.d -o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/once.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/src/once.cpp [22/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/scatter.cpp.o -MF src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/scatter.cpp.o.d -o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/scatter.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/src/scatter.cpp [23/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -MD -MT src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr.cpp.o -MF src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr.cpp.o.d -o src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/rpc_xdr/xdr.cpp [24/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/collective.cpp.o -MF src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/collective.cpp.o.d -o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/collective.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/src/collective.cpp [25/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/alltoall.cpp.o -MF src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/alltoall.cpp.o.d -o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/alltoall.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/src/alltoall.cpp [26/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/topology.cpp.o -MF src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/topology.cpp.o.d -o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/topology.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/src/topology.cpp [27/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_wait.cpp.o -MF src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_wait.cpp.o.d -o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_wait.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/src/p2p_wait.cpp [28/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o -MF src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o.d -o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/src/pthreads.cpp [29/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_init.cpp.o -MF src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_init.cpp.o.d -o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_init.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/src/tmpi_init.cpp [30/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_protocol.cpp.o -MF src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_protocol.cpp.o.d -o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_protocol.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/src/p2p_protocol.cpp [31/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/comm.cpp.o -MF src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/comm.cpp.o.d -o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/comm.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/src/comm.cpp [32/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_torchann.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_torchann.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_torchann.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarcomp_torchann.cpp [33/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_alchlambda.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_alchlambda.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_alchlambda.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarcomp_alchlambda.cpp [34/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_volmaps.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_volmaps.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_volmaps.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarcomp_volmaps.cpp [35/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abmd.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abmd.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abmd.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarbias_abmd.cpp [36/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/type.cpp.o -MF src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/type.cpp.o.d -o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/type.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/src/type.cpp [37/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparams.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparams.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparams.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarparams.cpp [38/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_replicas.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_replicas.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_replicas.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarproxy_replicas.cpp [39/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_angles.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_angles.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_angles.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarcomp_angles.cpp [40/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_combination.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_combination.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_combination.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarcomp_combination.cpp [41/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_system.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_system.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_system.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarproxy_system.cpp [42/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_volmaps.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_volmaps.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_volmaps.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarproxy_volmaps.cpp [43/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_rotations.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_rotations.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_rotations.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarcomp_rotations.cpp [44/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_alb.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_alb.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_alb.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarbias_alb.cpp [45/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_tcl.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_tcl.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_tcl.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarproxy_tcl.cpp [46/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar_neuralnetworkcompute.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar_neuralnetworkcompute.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar_neuralnetworkcompute.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvar_neuralnetworkcompute.cpp [47/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvars_memstream.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvars_memstream.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvars_memstream.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvars_memstream.cpp [48/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvardeps.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvardeps.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvardeps.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvardeps.cpp [49/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarbias_histogram.cpp [50/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_neuralnetwork.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_neuralnetwork.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_neuralnetwork.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarcomp_neuralnetwork.cpp [51/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_protein.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_protein.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_protein.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarcomp_protein.cpp [52/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram_reweight_amd.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram_reweight_amd.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram_reweight_amd.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarbias_histogram_reweight_amd.cpp [53/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/nr_jacobi.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/nr_jacobi.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/nr_jacobi.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/nr_jacobi.cpp [54/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid_integrate.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid_integrate.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid_integrate.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvargrid_integrate.cpp [55/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_coordnums.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_coordnums.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_coordnums.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarcomp_coordnums.cpp [56/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -DGMX_DESCRIBE_BLAS="External - user-supplied" -DGMX_DESCRIBE_LAPACK="External - user-supplied" -DGMX_FFT_MKL=0 -MD -MT src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/binary_information.cpp.o -MF src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/binary_information.cpp.o.d -o src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/binary_information.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/binary_information.cpp [57/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -MD -MT src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o -MF src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o.d -o src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/sparsematrix.cpp [58/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/fmm/CMakeFiles/fmm.dir/fmmforceprovider_stub.cpp.o -MF src/gromacs/fmm/CMakeFiles/fmm.dir/fmmforceprovider_stub.cpp.o.d -o src/gromacs/fmm/CMakeFiles/fmm.dir/fmmforceprovider_stub.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fmm/fmmforceprovider_stub.cpp [59/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_bias.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_bias.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_bias.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarscript_commands_bias.cpp [60/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -MD -MT src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/eigensolver.cpp.o -MF src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/eigensolver.cpp.o.d -o src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/eigensolver.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/eigensolver.cpp [61/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_io.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_io.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_io.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarproxy_io.cpp [62/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarcomp.cpp [63/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -MD -MT src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/matrix.cpp.o -MF src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/matrix.cpp.o.d -o src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/matrix.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/matrix.cpp [64/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/fmm/CMakeFiles/fmm.dir/fmm_mdpvalidator.cpp.o -MF src/gromacs/fmm/CMakeFiles/fmm.dir/fmm_mdpvalidator.cpp.o.d -o src/gromacs/fmm/CMakeFiles/fmm.dir/fmm_mdpvalidator.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fmm/fmm_mdpvalidator.cpp [65/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/abstractsection.cpp.o -MF src/gromacs/options/CMakeFiles/options.dir/abstractsection.cpp.o.d -o src/gromacs/options/CMakeFiles/options.dir/abstractsection.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/options/abstractsection.cpp [66/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/behaviorcollection.cpp.o -MF src/gromacs/options/CMakeFiles/options.dir/behaviorcollection.cpp.o.d -o src/gromacs/options/CMakeFiles/options.dir/behaviorcollection.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/options/behaviorcollection.cpp [67/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/fmm/CMakeFiles/fmm.dir/fmmforceproviderbuilder.cpp.o -MF src/gromacs/fmm/CMakeFiles/fmm.dir/fmmforceproviderbuilder.cpp.o.d -o src/gromacs/fmm/CMakeFiles/fmm.dir/fmmforceproviderbuilder.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fmm/fmmforceproviderbuilder.cpp [68/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_colvar.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_colvar.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_colvar.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarscript_commands_colvar.cpp [69/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarscript_commands.cpp [70/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/fmm/CMakeFiles/fmm.dir/fmm_mdmodule.cpp.o -MF src/gromacs/fmm/CMakeFiles/fmm.dir/fmm_mdmodule.cpp.o.d -o src/gromacs/fmm/CMakeFiles/fmm.dir/fmm_mdmodule.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fmm/fmm_mdmodule.cpp [71/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/optionsection.cpp.o -MF src/gromacs/options/CMakeFiles/options.dir/optionsection.cpp.o.d -o src/gromacs/options/CMakeFiles/options.dir/optionsection.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/options/optionsection.cpp [72/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarproxy.cpp [73/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/fmm/CMakeFiles/fmm.dir/fmm_mdpoptions.cpp.o -MF src/gromacs/fmm/CMakeFiles/fmm.dir/fmm_mdpoptions.cpp.o.d -o src/gromacs/fmm/CMakeFiles/fmm.dir/fmm_mdpoptions.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fmm/fmm_mdpoptions.cpp [74/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_apath.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_apath.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_apath.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarcomp_apath.cpp [75/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_restraint.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_restraint.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_restraint.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarbias_restraint.cpp [76/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_distances.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_distances.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_distances.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarcomp_distances.cpp [77/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/optionsvisitor.cpp.o -MF src/gromacs/options/CMakeFiles/options.dir/optionsvisitor.cpp.o.d -o src/gromacs/options/CMakeFiles/options.dir/optionsvisitor.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/options/optionsvisitor.cpp [78/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarbias.cpp [79/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvaratoms.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvaratoms.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvaratoms.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvaratoms.cpp [80/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/optionsassigner.cpp.o -MF src/gromacs/options/CMakeFiles/options.dir/optionsassigner.cpp.o.d -o src/gromacs/options/CMakeFiles/options.dir/optionsassigner.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/options/optionsassigner.cpp [81/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/filenameoptionmanager.cpp.o -MF src/gromacs/options/CMakeFiles/options.dir/filenameoptionmanager.cpp.o.d -o src/gromacs/options/CMakeFiles/options.dir/filenameoptionmanager.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/options/filenameoptionmanager.cpp [82/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarvalue.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarvalue.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarvalue.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarvalue.cpp [83/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvartypes.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvartypes.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvartypes.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvartypes.cpp [84/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/timeunitmanager.cpp.o -MF src/gromacs/options/CMakeFiles/options.dir/timeunitmanager.cpp.o.d -o src/gromacs/options/CMakeFiles/options.dir/timeunitmanager.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/options/timeunitmanager.cpp [85/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/reportgpuusage.cpp.o -MF src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/reportgpuusage.cpp.o.d -o src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/reportgpuusage.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/reportgpuusage.cpp [86/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/options.cpp.o -MF src/gromacs/options/CMakeFiles/options.dir/options.cpp.o.d -o src/gromacs/options/CMakeFiles/options.dir/options.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/options/options.cpp [87/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/findallgputasks.cpp.o -MF src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/findallgputasks.cpp.o.d -o src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/findallgputasks.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/findallgputasks.cpp [88/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/decidesimulationworkload.cpp.o -MF src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/decidesimulationworkload.cpp.o.d -o src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/decidesimulationworkload.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/decidesimulationworkload.cpp [89/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -MD -MT src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o -MF src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o.d -o src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/gmx_arpack.cpp [90/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/abstractoption.cpp.o -MF src/gromacs/options/CMakeFiles/options.dir/abstractoption.cpp.o.d -o src/gromacs/options/CMakeFiles/options.dir/abstractoption.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/options/abstractoption.cpp [91/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/fmm/CMakeFiles/fmm.dir/fmmoptions.cpp.o -MF src/gromacs/fmm/CMakeFiles/fmm.dir/fmmoptions.cpp.o.d -o src/gromacs/fmm/CMakeFiles/fmm.dir/fmmoptions.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fmm/fmmoptions.cpp [92/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/pullcoordexpressionparser.cpp.o -MF src/gromacs/pulling/CMakeFiles/pulling.dir/pullcoordexpressionparser.cpp.o.d -o src/gromacs/pulling/CMakeFiles/pulling.dir/pullcoordexpressionparser.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/pullcoordexpressionparser.cpp [93/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvargrid.cpp [94/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/usergpuids.cpp.o -MF src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/usergpuids.cpp.o.d -o src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/usergpuids.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/usergpuids.cpp [95/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_gpath.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_gpath.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_gpath.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarcomp_gpath.cpp [96/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarscript.cpp [97/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/compositesimulatorelement.cpp [98/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/transformationcoordinate.cpp.o -MF src/gromacs/pulling/CMakeFiles/pulling.dir/transformationcoordinate.cpp.o.d -o src/gromacs/pulling/CMakeFiles/pulling.dir/transformationcoordinate.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/transformationcoordinate.cpp [99/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/decidegpuusage.cpp.o -MF src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/decidegpuusage.cpp.o.d -o src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/decidegpuusage.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/decidegpuusage.cpp [100/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/resourcedivision.cpp.o -MF src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/resourcedivision.cpp.o.d -o src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/resourcedivision.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/resourcedivision.cpp [101/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparse.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparse.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparse.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarparse.cpp [102/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/taskassignment.cpp.o -MF src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/taskassignment.cpp.o.d -o src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/taskassignment.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/taskassignment.cpp [103/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/treesupport.cpp.o -MF src/gromacs/options/CMakeFiles/options.dir/treesupport.cpp.o.d -o src/gromacs/options/CMakeFiles/options.dir/treesupport.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/options/treesupport.cpp [104/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/filenameoption.cpp.o -MF src/gromacs/options/CMakeFiles/options.dir/filenameoption.cpp.o.d -o src/gromacs/options/CMakeFiles/options.dir/filenameoption.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/options/filenameoption.cpp [105/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/output.cpp.o -MF src/gromacs/pulling/CMakeFiles/pulling.dir/output.cpp.o.d -o src/gromacs/pulling/CMakeFiles/pulling.dir/output.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/output.cpp [106/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/domdechelper.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/domdechelper.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/domdechelper.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/domdechelper.cpp [107/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/checkpointhelper.cpp [108/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/referencetemperaturemanager.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/referencetemperaturemanager.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/referencetemperaturemanager.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/referencetemperaturemanager.cpp [109/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/pullutil.cpp.o -MF src/gromacs/pulling/CMakeFiles/pulling.dir/pullutil.cpp.o.d -o src/gromacs/pulling/CMakeFiles/pulling.dir/pullutil.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/pullutil.cpp [110/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abf.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abf.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abf.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarbias_abf.cpp [111/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_meta.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_meta.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_meta.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarbias_meta.cpp [112/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/pmeloadbalancehelper.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/pmeloadbalancehelper.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/pmeloadbalancehelper.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/pmeloadbalancehelper.cpp [113/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_opes.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_opes.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_opes.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarbias_opes.cpp [114/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/topologyholder.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/topologyholder.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/topologyholder.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/topologyholder.cpp [115/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/andersentemperaturecoupling.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/andersentemperaturecoupling.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/andersentemperaturecoupling.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/andersentemperaturecoupling.cpp [116/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/signallers.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/signallers.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/signallers.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/signallers.cpp [117/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -Wno-null-conversion -MD -MT src/gromacs/selection/CMakeFiles/scanner.dir/scanner.cpp.o -MF src/gromacs/selection/CMakeFiles/scanner.dir/scanner.cpp.o.d -o src/gromacs/selection/CMakeFiles/scanner.dir/scanner.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/scanner.cpp [118/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/constraintelement.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/constraintelement.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/constraintelement.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/constraintelement.cpp [119/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -MD -MT src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/energyterm.cpp.o -MF src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/energyterm.cpp.o.d -o src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/energyterm.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/energyanalysis/energyterm.cpp [120/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -MD -MT src/programs/CMakeFiles/gmx_objlib.dir/gmx.cpp.o -MF src/programs/CMakeFiles/gmx_objlib.dir/gmx.cpp.o.d -o src/programs/CMakeFiles/gmx_objlib.dir/gmx.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/programs/gmx.cpp [121/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/trajectoryelement.cpp [122/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/fileio/h5md/CMakeFiles/h5md.dir/h5md.cpp.o -MF src/gromacs/fileio/h5md/CMakeFiles/h5md.dir/h5md.cpp.o.d -o src/gromacs/fileio/h5md/CMakeFiles/h5md.dir/h5md.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/h5md/h5md.cpp [123/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/expandedensembleelement.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/expandedensembleelement.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/expandedensembleelement.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/expandedensembleelement.cpp [124/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -MD -MT src/programs/CMakeFiles/gmx_objlib.dir/legacymodules.cpp.o -MF src/programs/CMakeFiles/gmx_objlib.dir/legacymodules.cpp.o.d -o src/programs/CMakeFiles/gmx_objlib.dir/legacymodules.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/programs/legacymodules.cpp [125/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/computeglobalselement.cpp [126/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/firstorderpressurecoupling.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/firstorderpressurecoupling.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/firstorderpressurecoupling.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/firstorderpressurecoupling.cpp [127/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/forceelement.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/forceelement.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/forceelement.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/forceelement.cpp [128/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/freeenergyperturbationdata.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/freeenergyperturbationdata.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/freeenergyperturbationdata.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/freeenergyperturbationdata.cpp [129/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/energydata.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/energydata.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/energydata.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/energydata.cpp [130/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarmodule.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarmodule.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarmodule.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarmodule.cpp [131/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/pull.cpp.o -MF src/gromacs/pulling/CMakeFiles/pulling.dir/pull.cpp.o.d -o src/gromacs/pulling/CMakeFiles/pulling.dir/pull.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/pull.cpp [132/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -MF src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o.d -o src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/programs/mdrun/mdrun.cpp [133/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvar.cpp [134/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/pull_rotation.cpp.o -MF src/gromacs/pulling/CMakeFiles/pulling.dir/pull_rotation.cpp.o.d -o src/gromacs/pulling/CMakeFiles/pulling.dir/pull_rotation.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/pull_rotation.cpp [135/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -MF src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o.d -o src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/programs/mdrun/nonbonded_bench.cpp [136/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/pullelement.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/pullelement.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/pullelement.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/pullelement.cpp [137/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/parrinellorahmanbarostat.cpp [138/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/mttk.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/mttk.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/mttk.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/mttk.cpp [139/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/nosehooverchains.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/nosehooverchains.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/nosehooverchains.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/nosehooverchains.cpp [140/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/velocityscalingtemperaturecoupling.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/velocityscalingtemperaturecoupling.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/velocityscalingtemperaturecoupling.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/velocityscalingtemperaturecoupling.cpp [141/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/modularsimulator.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/modularsimulator.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/modularsimulator.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/modularsimulator.cpp [142/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -Wno-null-conversion -MD -MT src/gromacs/selection/CMakeFiles/scanner.dir/parser.cpp.o -MF src/gromacs/selection/CMakeFiles/scanner.dir/parser.cpp.o.d -o src/gromacs/selection/CMakeFiles/scanner.dir/parser.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/parser.cpp [143/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/statepropagatordata.cpp [144/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/basicoptions.cpp.o -MF src/gromacs/options/CMakeFiles/options.dir/basicoptions.cpp.o.d -o src/gromacs/options/CMakeFiles/options.dir/basicoptions.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/options/basicoptions.cpp [145/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/simulatoralgorithm.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/simulatoralgorithm.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/simulatoralgorithm.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/simulatoralgorithm.cpp [146/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/propagator.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/propagator.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/propagator.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/propagator.cpp [147/1006] cd /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/cmake -D VERSION_VARIABLES=/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/VersionInfo.cmake -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/baseversion-gen.cpp.cmakein -D VERSION_OUT=utility/baseversion-gen.cpp -D GMX_SOURCE_DOI= -D GMX_RELEASE_HASH= -D GMX_SOURCE_HASH= -P /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/cmake/gmxConfigureVersionInfo.cmake && /usr/bin/cmake -E touch utility/baseversion-gen.cpp [148/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/errorcodes.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/errorcodes.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/errorcodes.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/errorcodes.cpp [149/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/alignedallocator.cpp [150/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/physicalnodecommunicator.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/physicalnodecommunicator.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/physicalnodecommunicator.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/physicalnodecommunicator.cpp [151/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/booltype.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/booltype.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/booltype.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/booltype.cpp [152/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/logger.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/logger.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/logger.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/logger.cpp [153/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/any.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/any.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/any.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/any.cpp [154/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/int64_to_int.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/int64_to_int.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/int64_to_int.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/int64_to_int.cpp [155/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/compare.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/compare.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/compare.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/compare.cpp [156/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/init.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/init.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/init.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/init.cpp [157/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxassert.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxassert.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxassert.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/gmxassert.cpp [158/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/baseversion.cpp [159/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/basenetwork.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/basenetwork.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/basenetwork.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/basenetwork.cpp [160/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/ikeyvaluetreeerror.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/ikeyvaluetreeerror.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/ikeyvaluetreeerror.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/ikeyvaluetreeerror.cpp [161/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/fileredirector.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/fileredirector.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/fileredirector.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/fileredirector.cpp [162/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/pleasecite.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/pleasecite.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/pleasecite.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/pleasecite.cpp [163/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/niceheader.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/niceheader.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/niceheader.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/niceheader.cpp [164/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/errorformat.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/errorformat.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/errorformat.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/errorformat.cpp [165/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/message_string_collector.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/message_string_collector.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/message_string_collector.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/message_string_collector.cpp [166/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxomp.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxomp.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxomp.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/gmxomp.cpp [167/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/coolstuff.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/coolstuff.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/coolstuff.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/coolstuff.cpp [168/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/cstringutil.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/cstringutil.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/cstringutil.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/cstringutil.cpp [169/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/sysinfo.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/sysinfo.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/sysinfo.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/sysinfo.cpp [170/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/programcontext.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/programcontext.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/programcontext.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/programcontext.cpp [171/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/fatalerror.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/fatalerror.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/fatalerror.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/fatalerror.cpp [172/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreemdpwriter.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreemdpwriter.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreemdpwriter.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/keyvaluetreemdpwriter.cpp [173/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/smalloc.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/smalloc.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/smalloc.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/smalloc.cpp [174/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/veccompare.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/veccompare.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/veccompare.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/veccompare.cpp [175/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/mpicomm.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/mpicomm.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/mpicomm.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/mpicomm.cpp [176/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/stringstream.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/stringstream.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/stringstream.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/stringstream.cpp [177/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/filestream.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/filestream.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/filestream.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/filestream.cpp [178/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/txtdump.cpp [179/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/strconvert.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/strconvert.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/strconvert.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/strconvert.cpp [180/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/loggerbuilder.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/loggerbuilder.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/loggerbuilder.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/loggerbuilder.cpp [181/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/strdb.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/strdb.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/strdb.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/strdb.cpp [182/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/path.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/path.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/path.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/path.cpp [183/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/textreader.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/textreader.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/textreader.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/textreader.cpp [184/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/textwriter.cpp [185/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/vecdump.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/vecdump.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/vecdump.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/vecdump.cpp [186/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/futil.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/futil.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/futil.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/futil.cpp [187/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetree.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetree.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetree.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/keyvaluetree.cpp [188/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/directoryenumerator.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/directoryenumerator.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/directoryenumerator.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/directoryenumerator.cpp [189/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/stringutil.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/stringutil.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/stringutil.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/stringutil.cpp [190/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/datafilefinder.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/datafilefinder.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/datafilefinder.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/datafilefinder.cpp [191/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/exceptions.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/exceptions.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/exceptions.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/exceptions.cpp [192/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreetransform.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreetransform.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreetransform.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/keyvaluetreetransform.cpp [193/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp [194/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp [195/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_F.cpp [196/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp [197/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp [198/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_F.cpp [199/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp [200/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp [201/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp [202/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp [203/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp [204/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp [205/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp [206/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp [207/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VF.cpp [208/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp [209/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp [210/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp [211/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp [212/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp [213/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VF.cpp [214/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp [215/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp [216/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp [217/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp [218/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp [219/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp [220/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp [221/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp [222/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/mpiinfo.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/mpiinfo.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/mpiinfo.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/mpiinfo.cpp [223/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp [224/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp [225/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp [226/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_F.cpp [227/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp [228/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp [229/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp [230/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp [231/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp [232/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp [233/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VgrpF.cpp [234/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp [235/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp [236/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp [237/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp [238/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp [239/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp [240/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp [241/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp [242/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp [243/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp [244/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp [245/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp [246/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp [247/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp [248/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp [249/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp [250/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp [251/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp [252/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp [253/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp [254/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp [255/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp [256/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp [257/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp [258/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp [259/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp [260/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp [261/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VF.cpp [262/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp [263/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp [264/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp [265/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VF.cpp [266/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp [267/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp [268/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp [269/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp [270/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp [271/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp [272/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp [273/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp [274/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp [275/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp [276/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp [277/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VF.cpp [278/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp [279/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp [280/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp [281/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp [282/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp [283/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp [284/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp [285/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp [286/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp [287/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp [288/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp [289/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp [290/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_F.cpp [291/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp [292/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp [293/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_F.cpp [294/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp [295/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VF.cpp [296/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp [297/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp [298/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_F.cpp [299/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VF.cpp [300/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp [301/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp [302/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp [303/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp [304/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp [305/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp [306/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp [307/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_F.cpp [308/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VF.cpp [309/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp [310/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_F.cpp [311/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VF.cpp [312/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_F.cpp [313/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp [314/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp [315/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp [316/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VgrpF.cpp [317/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp [318/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VF.cpp [319/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp [320/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp [321/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp [322/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp [323/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp [324/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp [325/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp [326/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp [327/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp [328/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp [329/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp [330/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp [331/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp [332/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp [333/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp [334/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp [335/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp [336/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp [337/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp [338/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp [339/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp [340/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp [341/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_F.cpp [342/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp [343/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp [344/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp [345/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp [346/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp [347/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_F.cpp [348/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_F.cpp [349/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp [350/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp [351/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VF.cpp [352/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VF.cpp [353/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_F.cpp [354/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VF.cpp [355/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp [356/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_F.cpp [357/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VF.cpp [358/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp [359/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_F.cpp [360/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VF.cpp [361/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp [362/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp [363/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp [364/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp [365/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_F.cpp [366/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VF.cpp [367/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp [368/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_F.cpp [369/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VF.cpp [370/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp [371/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_F.cpp [372/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VgrpF.cpp [373/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VF.cpp [374/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernel_common.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernel_common.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernel_common.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernel_common.cpp [375/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/exclusionchecker.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/exclusionchecker.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/exclusionchecker.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/exclusionchecker.cpp [376/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistsets.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistsets.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistsets.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/pairlistsets.cpp [377/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodule.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodule.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodule.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/commandline/cmdlinemodule.cpp [378/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/commandline/cmdlinehelpcontext.cpp [379/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_geometry.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_geometry.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_geometry.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/nbnxm_geometry.cpp [380/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodulesettings.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodulesettings.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodulesettings.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/commandline/cmdlinemodulesettings.cpp [381/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_gpu_ref.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_gpu_ref.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_gpu_ref.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_reference/kernel_gpu_ref.cpp [382/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistparams.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistparams.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistparams.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/pairlistparams.cpp [383/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/freeenergydispatch.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/freeenergydispatch.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/freeenergydispatch.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/freeenergydispatch.cpp [384/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_system.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_system.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_system.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/benchmark/bench_system.cpp [385/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineinit.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineinit.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineinit.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/commandline/cmdlineinit.cpp [386/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistwork.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistwork.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistwork.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/pairlistwork.cpp [387/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/nbnxm.cpp [388/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/gridset.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/gridset.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/gridset.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/gridset.cpp [389/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_prune.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_prune.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_prune.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_reference/kernel_ref_prune.cpp [390/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairsearch.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairsearch.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairsearch.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/pairsearch.cpp [391/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist_simd_kernel.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist_simd_kernel.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist_simd_kernel.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/pairlist_simd_kernel.cpp [392/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/simd_prune_kernel.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/simd_prune_kernel.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/simd_prune_kernel.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/simd_prune_kernel.cpp [393/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/simd_energy_accumulator.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/simd_energy_accumulator.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/simd_energy_accumulator.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/simd_energy_accumulator.cpp [394/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistset.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistset.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistset.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/pairlistset.cpp [395/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/prunekerneldispatch.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/prunekerneldispatch.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/prunekerneldispatch.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/prunekerneldispatch.cpp [396/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/commandline/cmdlineparser.cpp [397/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/viewit.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/commandline/viewit.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/commandline/viewit.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/commandline/viewit.cpp [398/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineoptionsmodule.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineoptionsmodule.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineoptionsmodule.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/commandline/cmdlineoptionsmodule.cpp [399/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kerneldispatch.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kerneldispatch.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kerneldispatch.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kerneldispatch.cpp [400/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/filenm.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/commandline/filenm.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/commandline/filenm.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/commandline/filenm.cpp [401/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpwriter.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpwriter.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpwriter.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/commandline/cmdlinehelpwriter.cpp [402/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/atomdistribution.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/atomdistribution.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/atomdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/atomdistribution.cpp [403/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_setup.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_setup.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_setup.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/benchmark/bench_setup.cpp [404/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/dlbtiming.cpp [405/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlb.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlb.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlb.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/dlb.cpp [406/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist_tuning.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist_tuning.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist_tuning.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/pairlist_tuning.cpp [407/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/shellcompletions.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/commandline/shellcompletions.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/commandline/shellcompletions.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/commandline/shellcompletions.cpp [408/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/commandline/cmdlineprogramcontext.cpp [409/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/domdec_network.cpp [410/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/box.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/box.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/box.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/box.cpp [411/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/grid.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/grid.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/grid.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/grid.cpp [412/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomset.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomset.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomset.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/localatomset.cpp [413/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/ga2la.cpp [414/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodulemanager.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodulemanager.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodulemanager.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/commandline/cmdlinemodulemanager.cpp [415/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/computemultibodycutoffs.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/computemultibodycutoffs.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/computemultibodycutoffs.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/computemultibodycutoffs.cpp [416/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/collect.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/collect.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/collect.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/collect.cpp [417/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_setup.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_setup.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_setup.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/nbnxm_setup.cpp [418/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetdata.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetdata.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetdata.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/localatomsetdata.cpp [419/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/commandline/cmdlinehelpmodule.cpp [420/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/domdec_vsite.cpp [421/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetmanager.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetmanager.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetmanager.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/localatomsetmanager.cpp [422/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_zones.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_zones.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_zones.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/domdec_zones.cpp [423/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/pargs.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/commandline/pargs.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/commandline/pargs.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/commandline/pargs.cpp [424/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/cellsizes.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/cellsizes.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/cellsizes.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/cellsizes.cpp [425/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/gpuhaloexchange_impl.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/gpuhaloexchange_impl.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/gpuhaloexchange_impl.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/gpuhaloexchange_impl.cpp [426/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/functions.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/math/functions.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/math/functions.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/functions.cpp [427/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/nsgrid.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/nsgrid.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/nsgrid.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/nsgrid.cpp [428/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/dump.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/dump.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/dump.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/dump.cpp [429/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/3dtransforms.cpp [430/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/domainpaircomm.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/domainpaircomm.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/domainpaircomm.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/domainpaircomm.cpp [431/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/coordinatetransformation.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/math/coordinatetransformation.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/math/coordinatetransformation.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/coordinatetransformation.cpp [432/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/domdec_specatomcomm.cpp [433/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/atomdata.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/atomdata.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/atomdata.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/atomdata.cpp [434/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/mdsetup.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/mdsetup.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/mdsetup.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/mdsetup.cpp [435/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/utilities.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/math/utilities.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/math/utilities.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/utilities.cpp [436/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/distribute.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/distribute.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/distribute.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/distribute.cpp [437/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/densityfittingforce.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/math/densityfittingforce.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/math/densityfittingforce.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/densityfittingforce.cpp [438/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/optimization.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/math/optimization.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/math/optimization.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/optimization.cpp [439/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/do_fit.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/math/do_fit.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/math/do_fit.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/do_fit.cpp [440/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/utility.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/utility.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/utility.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/utility.cpp [441/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/commrec.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/commrec.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/commrec.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdtypes/commrec.cpp [442/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/invertmatrix.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/math/invertmatrix.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/math/invertmatrix.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/invertmatrix.cpp [443/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/domdec_constraints.cpp [444/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/makebondedlinks.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/makebondedlinks.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/makebondedlinks.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/makebondedlinks.cpp [445/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/domdec_setup.cpp [446/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/localtopologychecker.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/localtopologychecker.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/localtopologychecker.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/localtopologychecker.cpp [447/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/densityfit.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/math/densityfit.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/math/densityfit.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/densityfit.cpp [448/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/exponentialmovingaverage.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/math/exponentialmovingaverage.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/math/exponentialmovingaverage.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/exponentialmovingaverage.cpp [449/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/haloexchange.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/haloexchange.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/haloexchange.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/haloexchange.cpp [450/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/haloexchangesetup.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/haloexchangesetup.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/haloexchangesetup.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/haloexchangesetup.cpp [451/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/md_enums.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/md_enums.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/md_enums.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdtypes/md_enums.cpp [452/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/gausstransform.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/math/gausstransform.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/math/gausstransform.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/gausstransform.cpp [453/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/iforceprovider.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/iforceprovider.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/iforceprovider.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdtypes/iforceprovider.cpp [454/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/neldermead.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/math/neldermead.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/math/neldermead.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/neldermead.cpp [455/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/nrjac.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/math/nrjac.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/math/nrjac.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/nrjac.cpp [456/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/boxutilities.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/boxutilities.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/boxutilities.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/boxutilities.cpp [457/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/forcebuffers.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/forcebuffers.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/forcebuffers.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdtypes/forcebuffers.cpp [458/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/group.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/group.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/group.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdtypes/group.cpp [459/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/observableshistory.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/observableshistory.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/observableshistory.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdtypes/observableshistory.cpp [460/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/reversetopology.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/reversetopology.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/reversetopology.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/reversetopology.cpp [461/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbcenums.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbcenums.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbcenums.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/pbcenums.cpp [462/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/rstparser.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/rstparser.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/rstparser.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/onlinehelp/rstparser.cpp [463/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/onlinehelp/helpmanager.cpp [464/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/observablesreducer.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/observablesreducer.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/observablesreducer.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdtypes/observablesreducer.cpp [465/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/localtopology.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/localtopology.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/localtopology.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/localtopology.cpp [466/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/redistribute.cpp [467/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/random/tabulatednormaldistribution.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/random/tabulatednormaldistribution.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/random/tabulatednormaldistribution.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/random/tabulatednormaldistribution.cpp [468/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc_simd.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc_simd.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc_simd.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/pbc_simd.cpp [469/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/com.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/com.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/com.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/com.cpp [470/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/timing/cyclecounter.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/timing/cyclecounter.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/timing/cyclecounter.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/cyclecounter.cpp [471/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/timing/external_tracing.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/timing/external_tracing.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/timing/external_tracing.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/external_tracing.cpp [472/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/checkpointdata.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/checkpointdata.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/checkpointdata.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdtypes/checkpointdata.cpp [473/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/timing/walltime_accounting.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/timing/walltime_accounting.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/timing/walltime_accounting.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/walltime_accounting.cpp [474/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/multipletimestepping.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/multipletimestepping.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/multipletimestepping.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdtypes/multipletimestepping.cpp [475/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helptopic.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helptopic.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helptopic.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/onlinehelp/helptopic.cpp [476/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/random/seed.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/random/seed.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/random/seed.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/random/seed.cpp [477/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/interaction_const.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/interaction_const.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/interaction_const.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdtypes/interaction_const.cpp [478/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpformat.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpformat.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpformat.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/onlinehelp/helpformat.cpp [479/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/rmpbc.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/rmpbc.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/rmpbc.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/rmpbc.cpp [480/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbcmethods.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbcmethods.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbcmethods.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/pbcmethods.cpp [481/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/restraint/manager.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/restraint/manager.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/restraint/manager.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/restraint/manager.cpp [482/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/df_history.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/df_history.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/df_history.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdtypes/df_history.cpp [483/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/serialization/inmemoryserializer.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/serialization/inmemoryserializer.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/serialization/inmemoryserializer.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/inmemoryserializer.cpp [484/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/energyhistory.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/energyhistory.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/energyhistory.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdtypes/energyhistory.cpp [485/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tables/splineutil.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/tables/splineutil.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/tables/splineutil.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/tables/splineutil.cpp [486/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/forcefieldparameters.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/topology/forcefieldparameters.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/topology/forcefieldparameters.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/forcefieldparameters.cpp [487/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/block.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/topology/block.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/topology/block.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/block.cpp [488/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/ifunc.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/topology/ifunc.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/topology/ifunc.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/ifunc.cpp [489/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/restraint/restraintmdmodule.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/restraint/restraintmdmodule.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/restraint/restraintmdmodule.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/restraint/restraintmdmodule.cpp [490/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/atomsbuilder.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/topology/atomsbuilder.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/topology/atomsbuilder.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/atomsbuilder.cpp [491/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/invblock.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/topology/invblock.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/topology/invblock.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/invblock.cpp [492/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/awh_history.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/awh_history.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/awh_history.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdtypes/awh_history.cpp [493/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/threaded_force_buffer.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/threaded_force_buffer.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/threaded_force_buffer.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdtypes/threaded_force_buffer.cpp [494/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpwritercontext.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpwritercontext.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpwritercontext.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/onlinehelp/helpwritercontext.cpp [495/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/atoms.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/topology/atoms.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/topology/atoms.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/atoms.cpp [496/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/pbc.cpp [497/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/exclusionblocks.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/topology/exclusionblocks.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/topology/exclusionblocks.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/exclusionblocks.cpp [498/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/atomprop.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/topology/atomprop.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/topology/atomprop.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/atomprop.cpp [499/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tables/cubicsplinetable.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/tables/cubicsplinetable.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/tables/cubicsplinetable.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/tables/cubicsplinetable.cpp [500/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tables/quadraticsplinetable.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/tables/quadraticsplinetable.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/tables/quadraticsplinetable.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/tables/quadraticsplinetable.cpp [501/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/inputrec.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/inputrec.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/inputrec.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdtypes/inputrec.cpp [502/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/binsearch.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/binsearch.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/binsearch.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/binsearch.cpp [503/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/angle_correction.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/angle_correction.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/angle_correction.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/angle_correction.cpp [504/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/mshift.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/mshift.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/mshift.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/mshift.cpp [505/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/idef.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/topology/idef.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/topology/idef.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/idef.cpp [506/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/pairlist.cpp [507/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/timing/wallcycle.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/timing/wallcycle.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/timing/wallcycle.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/wallcycle.cpp [508/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/state.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/state.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/state.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdtypes/state.cpp [509/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/residuetypes.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/topology/residuetypes.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/topology/residuetypes.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/residuetypes.cpp [510/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/dens_filter.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/dens_filter.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/dens_filter.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/dens_filter.cpp [511/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/serialization/keyvaluetreeserializer.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/serialization/keyvaluetreeserializer.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/serialization/keyvaluetreeserializer.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/keyvaluetreeserializer.cpp [512/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/mtop_atomloops.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/topology/mtop_atomloops.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/topology/mtop_atomloops.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/mtop_atomloops.cpp [513/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectory/trajectoryframe.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectory/trajectoryframe.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectory/trajectoryframe.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectory/trajectoryframe.cpp [514/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/imd/imdsocket.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/imd/imdsocket.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/imd/imdsocket.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/imd/imdsocket.cpp [515/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectory/energyframe.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectory/energyframe.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectory/energyframe.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectory/energyframe.cpp [516/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tables/forcetable.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/tables/forcetable.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/tables/forcetable.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/tables/forcetable.cpp [517/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mimic/utilities.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mimic/utilities.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mimic/utilities.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mimic/utilities.cpp [518/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/topsort.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/topology/topsort.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/topology/topsort.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/topsort.cpp [519/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/eigio.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/eigio.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/eigio.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/eigio.cpp [520/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mimic/communicator_stub.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mimic/communicator_stub.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mimic/communicator_stub.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mimic/communicator_stub.cpp [521/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/cmat.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/cmat.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/cmat.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/cmat.cpp [522/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/symtab.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/topology/symtab.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/topology/symtab.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/symtab.cpp [523/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/fitahx.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/fitahx.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/fitahx.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/fitahx.cpp [524/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/topology.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/topology/topology.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/topology/topology.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/topology.cpp [525/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/embedded_system_preprocessing.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/topology/embedded_system_preprocessing.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/topology/embedded_system_preprocessing.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/embedded_system_preprocessing.cpp [526/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/dlist.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/dlist.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/dlist.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/dlist.cpp [527/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_angle.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_angle.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_angle.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_angle.cpp [528/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/anadih.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/anadih.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/anadih.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/anadih.cpp [529/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/imd/imd.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/imd/imd.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/imd/imd.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/imd/imd.cpp [530/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/mtop_util.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/topology/mtop_util.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/topology/mtop_util.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/mtop_util.cpp [531/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/cluster_methods.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/cluster_methods.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/cluster_methods.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/cluster_methods.cpp [532/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_bundle.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_bundle.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_bundle.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_bundle.cpp [533/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/domdec.cpp [534/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/partition.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/partition.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/partition.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/partition.cpp [535/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/index.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/topology/index.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/topology/index.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/index.cpp [536/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dielectric.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dielectric.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dielectric.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_dielectric.cpp [537/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_clustsize.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_clustsize.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_clustsize.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_clustsize.cpp [538/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_densmap.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_densmap.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_densmap.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_densmap.cpp [539/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_confrms.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_confrms.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_confrms.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_confrms.cpp [540/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_analyze.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_analyze.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_analyze.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_analyze.cpp [541/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_current.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_current.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_current.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_current.cpp [542/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_density.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_density.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_density.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_density.cpp [543/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_awh.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_awh.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_awh.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_awh.cpp [544/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_1x1.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_1x1.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_1x1.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_reference/kernel_ref_1x1.cpp [545/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_densorder.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_densorder.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_densorder.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_densorder.cpp [546/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dyecoupl.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dyecoupl.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dyecoupl.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_dyecoupl.cpp [547/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dos.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dos.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dos.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_dos.cpp [548/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_covar.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_covar.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_covar.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_covar.cpp [549/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_anaeig.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_anaeig.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_anaeig.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_anaeig.cpp [550/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_enemat.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_enemat.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_enemat.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_enemat.cpp [551/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_h2order.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_h2order.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_h2order.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_h2order.cpp [552/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_filter.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_filter.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_filter.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_filter.cpp [553/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_helix.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_helix.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_helix.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_helix.cpp [554/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_lie.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_lie.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_lie.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_lie.cpp [555/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_cluster.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_cluster.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_cluster.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_cluster.cpp [556/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_gyrate.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_gyrate.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_gyrate.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_gyrate.cpp [557/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dipoles.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dipoles.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dipoles.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_dipoles.cpp [558/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_bar.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_bar.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_bar.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_bar.cpp [559/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/essentialdynamics/edsam.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/essentialdynamics/edsam.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/essentialdynamics/edsam.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/essentialdynamics/edsam.cpp [560/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_helixorient.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_helixorient.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_helixorient.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_helixorient.cpp [561/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_make_edi.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_make_edi.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_make_edi.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_make_edi.cpp [562/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_mdmat.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_mdmat.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_mdmat.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_mdmat.cpp [563/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmens.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmens.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmens.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_nmens.cpp [564/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rama.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rama.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rama.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_rama.cpp [565/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_hydorder.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_hydorder.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_hydorder.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_hydorder.cpp [566/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_saxs.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_saxs.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_saxs.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_saxs.cpp [567/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/swap/swapcoords.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/swap/swapcoords.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/swap/swapcoords.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/swap/swapcoords.cpp [568/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_principal.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_principal.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_principal.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_principal.cpp [569/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmtraj.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmtraj.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmtraj.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_nmtraj.cpp [570/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmeig.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmeig.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmeig.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_nmeig.cpp [571/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rotacf.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rotacf.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rotacf.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_rotacf.cpp [572/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_mindist.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_mindist.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_mindist.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_mindist.cpp [573/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_polystat.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_polystat.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_polystat.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_polystat.cpp [574/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_disre.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_disre.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_disre.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_disre.cpp [575/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_potential.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_potential.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_potential.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_potential.cpp [576/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sigeps.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sigeps.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sigeps.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_sigeps.cpp [577/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_saltbr.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_saltbr.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_saltbr.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_saltbr.cpp [578/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rotmat.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rotmat.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rotmat.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_rotmat.cpp [579/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_chi.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_chi.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_chi.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_chi.cpp [580/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sans.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sans.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sans.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_sans.cpp [581/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_order.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_order.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_order.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_order.cpp [582/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rmsf.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rmsf.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rmsf.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_rmsf.cpp [583/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rmsdist.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rmsdist.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rmsdist.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_rmsdist.cpp [584/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_energy.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_energy.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_energy.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_energy.cpp [585/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_wheel.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_wheel.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_wheel.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_wheel.cpp [586/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_spatial.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_spatial.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_spatial.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_spatial.cpp [587/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/powerspect.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/powerspect.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/powerspect.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/powerspect.cpp [588/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_spol.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_spol.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_spol.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_spol.cpp [589/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sorient.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sorient.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sorient.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_sorient.cpp [590/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmr.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmr.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmr.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_nmr.cpp [591/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_trjorder.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_trjorder.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_trjorder.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_trjorder.cpp [592/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/thermochemistry.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/thermochemistry.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/thermochemistry.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/thermochemistry.cpp [593/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/princ.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/princ.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/princ.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/princ.cpp [594/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_velacc.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_velacc.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_velacc.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_velacc.cpp [595/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_tcaf.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_tcaf.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_tcaf.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_tcaf.cpp [596/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/nrama.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/nrama.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/nrama.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/nrama.cpp [597/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/calch.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/calch.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/calch.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/calch.cpp [598/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/pp2shift.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/pp2shift.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/pp2shift.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/pp2shift.cpp [599/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/hxprops.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/hxprops.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/hxprops.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/hxprops.cpp [600/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/compute_io.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/compute_io.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/compute_io.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/compute_io.cpp [601/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rms.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rms.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rms.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_rms.cpp [602/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_vanhove.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_vanhove.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_vanhove.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_vanhove.cpp [603/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/sfactor.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/sfactor.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/sfactor.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/sfactor.cpp [604/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/nsfactor.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/nsfactor.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/nsfactor.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/nsfactor.cpp [605/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/add_par.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/add_par.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/add_par.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/add_par.cpp [606/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_bond_atomtype.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_bond_atomtype.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_bond_atomtype.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/gpp_bond_atomtype.cpp [607/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sham.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sham.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sham.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_sham.cpp [608/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/fflibutil.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/fflibutil.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/fflibutil.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/fflibutil.cpp [609/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_traj.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_traj.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_traj.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_traj.cpp [610/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/makeexclusiondistances.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/makeexclusiondistances.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/makeexclusiondistances.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/makeexclusiondistances.cpp [611/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/convparm.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/convparm.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/convparm.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/convparm.cpp [612/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_maxwell_velocities.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_maxwell_velocities.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_maxwell_velocities.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/gen_maxwell_velocities.cpp [613/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genrestr.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genrestr.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genrestr.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/genrestr.cpp [614/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/hizzie.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/hizzie.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/hizzie.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/hizzie.cpp [615/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_nextnb.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_nextnb.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_nextnb.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/gpp_nextnb.cpp [616/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genconf.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genconf.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genconf.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/genconf.cpp [617/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pgutil.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pgutil.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pgutil.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/pgutil.cpp [618/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/massrepartitioning.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/massrepartitioning.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/massrepartitioning.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/massrepartitioning.cpp [619/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/editconf.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/editconf.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/editconf.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/editconf.cpp [620/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/nm2type.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/nm2type.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/nm2type.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/nm2type.cpp [621/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/h_db.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/h_db.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/h_db.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/h_db.cpp [622/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/hackblock.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/hackblock.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/hackblock.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/hackblock.cpp [623/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genhydro.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genhydro.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genhydro.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/genhydro.cpp [624/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genion.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genion.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genion.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/genion.cpp [625/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_atomtype.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_atomtype.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_atomtype.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/gpp_atomtype.cpp [626/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gmxcpp.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gmxcpp.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gmxcpp.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/gmxcpp.cpp [627/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readrot.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readrot.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readrot.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/readrot.cpp [628/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/tomorse.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/tomorse.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/tomorse.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/tomorse.cpp [629/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/crosscorr.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/crosscorr.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/crosscorr.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/correlationfunctions/crosscorr.cpp [630/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topdirs.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topdirs.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topdirs.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/topdirs.cpp [631/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_wham.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_wham.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_wham.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_wham.cpp [632/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_xpm2ps.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_xpm2ps.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_xpm2ps.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_xpm2ps.cpp [633/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topshake.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topshake.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topshake.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/topshake.cpp [634/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/gmx_lmcurve.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/gmx_lmcurve.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/gmx_lmcurve.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/correlationfunctions/gmx_lmcurve.cpp [635/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/toputil.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/toputil.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/toputil.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/toputil.cpp [636/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datamodule.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datamodule.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datamodule.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/analysisdata/datamodule.cpp [637/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/insert_molecules.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/insert_molecules.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/insert_molecules.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/insert_molecules.cpp [638/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/polynomials.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/polynomials.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/polynomials.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/correlationfunctions/polynomials.cpp [639/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/integrate.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/integrate.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/integrate.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/correlationfunctions/integrate.cpp [640/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/manyautocorrelation.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/manyautocorrelation.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/manyautocorrelation.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/correlationfunctions/manyautocorrelation.cpp [641/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/xlate.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/xlate.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/xlate.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/xlate.cpp [642/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_hbond.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_hbond.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_hbond.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_hbond.cpp [643/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/statistics/statistics.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/statistics/statistics.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/statistics/statistics.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/statistics/statistics.cpp [644/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/dataframe.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/dataframe.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/dataframe.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/analysisdata/dataframe.cpp [645/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/expfit.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/expfit.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/expfit.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/correlationfunctions/expfit.cpp [646/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/analysisdata.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/analysisdata.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/analysisdata.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/analysisdata/analysisdata.cpp [647/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/dataproxy.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/dataproxy.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/dataproxy.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/analysisdata/dataproxy.cpp [648/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/specbond.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/specbond.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/specbond.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/specbond.cpp [649/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/arraydata.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/arraydata.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/arraydata.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/analysisdata/arraydata.cpp [650/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/abstractdata.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/abstractdata.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/abstractdata.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/analysisdata/abstractdata.cpp [651/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/autocorr.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/autocorr.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/autocorr.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/correlationfunctions/autocorr.cpp [652/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/solvate.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/solvate.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/solvate.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/solvate.cpp [653/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/frameaverager.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/frameaverager.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/frameaverager.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/analysisdata/modules/frameaverager.cpp [654/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_ad.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_ad.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_ad.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/gen_ad.cpp [655/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datamodulemanager.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datamodulemanager.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datamodulemanager.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/analysisdata/datamodulemanager.cpp [656/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/average.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/average.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/average.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/analysisdata/modules/average.cpp [657/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadaptercontainer.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadaptercontainer.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadaptercontainer.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/coordinateio/outputadaptercontainer.cpp [658/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setstarttime.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setstarttime.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setstarttime.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/coordinateio/outputadapters/setstarttime.cpp [659/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/ter_db.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/ter_db.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/ter_db.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/ter_db.cpp [660/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/settimestep.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/settimestep.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/settimestep.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/coordinateio/outputadapters/settimestep.cpp [661/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/displacement.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/displacement.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/displacement.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/analysisdata/modules/displacement.cpp /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/analysisdata/modules/displacement.cpp: In member function ‘virtual void gmx::AnalysisDataDisplacementModule::frameFinished(const gmx::AnalysisDataFrameHeader&)’: /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/analysisdata/modules/displacement.cpp:279:13: warning: variable ‘k’ set but not used [-Wunused-but-set-variable=] 279 | int k = 1; | ^ At top level: cc1plus: note: unrecognized command-line option ‘-Wno-cast-function-type-strict’ may have been intended to silence earlier diagnostics [662/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/x2top.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/x2top.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/x2top.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/x2top.cpp [663/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setprecision.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setprecision.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setprecision.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/coordinateio/outputadapters/setprecision.cpp [664/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setforces.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setforces.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setforces.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/coordinateio/outputadapters/setforces.cpp [665/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setatoms.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setatoms.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setatoms.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/coordinateio/outputadapters/setatoms.cpp [666/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/outputselector.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/outputselector.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/outputselector.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/coordinateio/outputadapters/outputselector.cpp [667/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setvelocities.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setvelocities.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setvelocities.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/coordinateio/outputadapters/setvelocities.cpp [668/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/frameconverters/register.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/frameconverters/register.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/frameconverters/register.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/coordinateio/frameconverters/register.cpp [669/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/lifetime.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/lifetime.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/lifetime.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/analysisdata/modules/lifetime.cpp [670/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/resall.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/resall.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/resall.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/resall.cpp [671/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datastorage.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datastorage.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datastorage.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/analysisdata/datastorage.cpp [672/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/requirements.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/requirements.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/requirements.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/coordinateio/requirements.cpp [673/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules.cpp [674/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/analysissettings.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/analysissettings.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/analysissettings.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/analysissettings.cpp [675/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topio.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topio.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topio.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/topio.cpp [676/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/plot.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/plot.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/plot.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/analysisdata/modules/plot.cpp [677/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/coordinatefile.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/coordinatefile.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/coordinatefile.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/coordinateio/coordinatefile.cpp [678/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/isotope.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/isotope.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/isotope.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/isotope.cpp [679/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/convert_trj.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/convert_trj.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/convert_trj.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/convert_trj.cpp [680/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/cmdlinerunner.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/cmdlinerunner.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/cmdlinerunner.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/cmdlinerunner.cpp [681/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/vsite_parm.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/vsite_parm.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/vsite_parm.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/vsite_parm.cpp [682/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/histogram.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/histogram.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/histogram.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/analysisdata/modules/histogram.cpp [683/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/analysismodule.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/analysismodule.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/analysismodule.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/analysismodule.cpp [684/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_vsite.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_vsite.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_vsite.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/gen_vsite.cpp [685/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering-debye-sans.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering-debye-sans.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering-debye-sans.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/scattering-debye-sans.cpp [686/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/gyrate.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/gyrate.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/gyrate.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/gyrate.cpp [687/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/extract_cluster.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/extract_cluster.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/extract_cluster.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/extract_cluster.cpp [688/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/distance.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/distance.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/distance.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/distance.cpp [689/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering-debye-saxs.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering-debye-saxs.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering-debye-saxs.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/scattering-debye-saxs.cpp [690/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/freevolume.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/freevolume.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/freevolume.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/freevolume.cpp [691/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scatteringfactors.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scatteringfactors.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scatteringfactors.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/scatteringfactors.cpp [692/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2top.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2top.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2top.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/pdb2top.cpp [693/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering-debye.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering-debye.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering-debye.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/scattering-debye.cpp [694/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/pairdist.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/pairdist.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/pairdist.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/pairdist.cpp [695/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/angle.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/angle.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/angle.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/angle.cpp [696/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/trajectory.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/trajectory.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/trajectory.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/trajectory.cpp [697/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/rdf.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/rdf.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/rdf.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/rdf.cpp [698/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_4x4.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_4x4.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_4x4.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_reference/kernel_ref_4x4.cpp [699/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/surfacearea.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/surfacearea.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/surfacearea.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/surfacearea.cpp [700/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/conformation_utilities.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/conformation_utilities.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/conformation_utilities.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxlib/conformation_utilities.cpp [701/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tools/mk_angndx.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/tools/mk_angndx.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/tools/mk_angndx.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/tools/mk_angndx.cpp [702/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/topologyinformation.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/topologyinformation.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/topologyinformation.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/topologyinformation.cpp [703/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/runnercommon.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/runnercommon.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/runnercommon.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/runnercommon.cpp [704/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/network.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/network.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/network.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxlib/network.cpp [705/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/scattering.cpp [706/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nrnb.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nrnb.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nrnb.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxlib/nrnb.cpp [707/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/checkpointhandler.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/checkpointhandler.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/checkpointhandler.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/checkpointhandler.cpp [708/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/sasa.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/sasa.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/sasa.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/sasa.cpp [709/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calcvir.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calcvir.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calcvir.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/calcvir.cpp [710/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calcmu.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calcmu.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calcmu.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/calcmu.cpp [711/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tools/eneconv.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/tools/eneconv.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/tools/eneconv.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/tools/eneconv.cpp [712/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tools/report_methods.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/tools/report_methods.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/tools/report_methods.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/tools/report_methods.cpp [713/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/boxdeformation.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/boxdeformation.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/boxdeformation.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/boxdeformation.cpp [714/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tools/dump.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/tools/dump.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/tools/dump.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/tools/dump.cpp [715/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/energydrifttracker.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/energydrifttracker.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/energydrifttracker.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/energydrifttracker.cpp [716/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/broadcaststructs.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/broadcaststructs.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/broadcaststructs.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/broadcaststructs.cpp [717/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tools/check.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/tools/check.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/tools/check.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/tools/check.cpp [718/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/msd.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/msd.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/msd.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/msd.cpp [719/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/select.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/select.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/select.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/select.cpp [720/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/expanded_internal.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/expanded_internal.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/expanded_internal.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/expanded_internal.cpp [721/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/ebin.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/ebin.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/ebin.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/ebin.cpp [722/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tools/trjcat.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/tools/trjcat.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/tools/trjcat.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/tools/trjcat.cpp [723/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/grompp.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/grompp.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/grompp.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/grompp.cpp [724/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tools/pme_error.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/tools/pme_error.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/tools/pme_error.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/tools/pme_error.cpp [725/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/dssp.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/dssp.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/dssp.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/dssp.cpp [726/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/freeenergyparameters.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/freeenergyparameters.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/freeenergyparameters.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/freeenergyparameters.cpp [727/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constraintrange.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constraintrange.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constraintrange.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/constraintrange.cpp [728/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/lincs_constraint_group_sizes.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/lincs_constraint_group_sizes.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/lincs_constraint_group_sizes.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/lincs_constraint_group_sizes.cpp [729/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/enerdata_utils.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/enerdata_utils.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/enerdata_utils.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/enerdata_utils.cpp [730/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/gmx_omp_nthreads.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/gmx_omp_nthreads.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/gmx_omp_nthreads.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/gmx_omp_nthreads.cpp [731/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tools/make_ndx.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/tools/make_ndx.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/tools/make_ndx.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/tools/make_ndx.cpp [732/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constraint_gpu_helpers.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constraint_gpu_helpers.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constraint_gpu_helpers.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/constraint_gpu_helpers.cpp [733/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdgraph_gpu_impl.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdgraph_gpu_impl.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdgraph_gpu_impl.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/mdgraph_gpu_impl.cpp [734/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/groupcoord.cpp [735/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tools/trjconv.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/tools/trjconv.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/tools/trjconv.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/tools/trjconv.cpp [736/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tools/convert_tpr.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/tools/convert_tpr.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/tools/convert_tpr.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/tools/convert_tpr.cpp [737/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/toppush.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/toppush.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/toppush.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/toppush.cpp [738/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/dispersioncorrection.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/dispersioncorrection.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/dispersioncorrection.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/dispersioncorrection.cpp [739/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/rbin.cpp [740/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/simulationsignal.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/simulationsignal.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/simulationsignal.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/simulationsignal.cpp [741/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/force.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/force.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/force.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/force.cpp [742/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sighandler.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sighandler.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sighandler.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/sighandler.cpp [743/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/tgroup.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/tgroup.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/tgroup.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/tgroup.cpp [744/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stophandler.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stophandler.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stophandler.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/stophandler.cpp [745/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tools/tune_pme.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/tools/tune_pme.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/tools/tune_pme.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/tools/tune_pme.cpp [746/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rf_util.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rf_util.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rf_util.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/rf_util.cpp [747/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2gmx.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2gmx.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2gmx.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/pdb2gmx.cpp [748/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/resethandler.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/resethandler.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/resethandler.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/resethandler.cpp [749/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/perf_est.cpp [750/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calc_verletbuf.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calc_verletbuf.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calc_verletbuf.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/calc_verletbuf.cpp [751/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/hbond.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/hbond.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/hbond.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/hbond.cpp [752/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/mdebin_bar.cpp [753/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/gpuforcereduction_impl_stubs.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/gpuforcereduction_impl_stubs.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/gpuforcereduction_impl_stubs.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/gpuforcereduction_impl_stubs.cpp [754/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/shake.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/shake.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/shake.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/shake.cpp [755/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/coupling.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/coupling.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/coupling.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/coupling.cpp [756/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readpull.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readpull.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readpull.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/readpull.cpp [757/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stat.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stat.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stat.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/stat.cpp [758/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constr.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constr.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constr.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/constr.cpp [759/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update_constrain_gpu_impl_stubs.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update_constrain_gpu_impl_stubs.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update_constrain_gpu_impl_stubs.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/update_constrain_gpu_impl_stubs.cpp [760/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdatoms.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdatoms.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdatoms.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/mdatoms.cpp [761/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/md_support.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/md_support.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/md_support.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/md_support.cpp [762/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/splitter.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/splitter.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/splitter.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/splitter.cpp [763/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/expanded.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/expanded.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/expanded.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/expanded.cpp [764/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/mdoutf.cpp [765/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/trajectory_writing.cpp [766/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wholemoleculetransform.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wholemoleculetransform.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wholemoleculetransform.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/wholemoleculetransform.cpp [767/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update_vv.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update_vv.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update_vv.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/update_vv.cpp [768/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/pointstate.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/pointstate.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/pointstate.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/awh/pointstate.cpp [769/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/correlationgrid.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/correlationgrid.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/correlationgrid.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/awh/correlationgrid.cpp [770/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/energyoutput.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/energyoutput.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/energyoutput.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/energyoutput.cpp [771/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingoutputprovider.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingoutputprovider.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingoutputprovider.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/densityfitting/densityfittingoutputprovider.cpp [772/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biasparams.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biasparams.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biasparams.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/awh/biasparams.cpp [773/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/histogramsize.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/histogramsize.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/histogramsize.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/awh/histogramsize.cpp [774/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/wall.cpp [775/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/correlationtensor.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/correlationtensor.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/correlationtensor.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/awh/correlationtensor.cpp [776/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/coordstate.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/coordstate.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/coordstate.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/awh/coordstate.cpp [777/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroupscog.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroupscog.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroupscog.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/updategroupscog.cpp [778/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/correlationhistory.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/correlationhistory.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/correlationhistory.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/awh/correlationhistory.cpp [779/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingparameters.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingparameters.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingparameters.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/densityfitting/densityfittingparameters.cpp [780/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biassharing.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biassharing.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biassharing.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/awh/biassharing.cpp [781/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/membed.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/membed.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/membed.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/membed.cpp [782/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingamplitudelookup.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingamplitudelookup.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingamplitudelookup.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/densityfitting/densityfittingamplitudelookup.cpp [783/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vcm.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vcm.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vcm.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/vcm.cpp [784/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroups.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroups.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroups.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/updategroups.cpp [785/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/settle.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/settle.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/settle.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/settle.cpp [786/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/bias.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/bias.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/bias.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/awh/bias.cpp [787/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biasgrid.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biasgrid.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biasgrid.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/awh/biasgrid.cpp [788/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biaswriter.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biaswriter.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biaswriter.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/awh/biaswriter.cpp [789/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/forcerec.cpp /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/forcerec.cpp: In function ‘std::vector makeLJPmeC6GridCorrectionParameters(int, gmx::ArrayRef, LongRangeVdW)’: /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/forcerec.cpp:181:23: warning: variable ‘k’ set but not used [-Wunused-but-set-variable=] 181 | int k = 0; | ^ At top level: cc1plus: note: unrecognized command-line option ‘-Wno-cast-function-type-strict’ may have been intended to silence earlier diagnostics [790/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/nnpot/binary_information.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/nnpot/binary_information.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/nnpot/binary_information.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/nnpot/binary_information.cpp [791/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readir.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readir.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readir.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/readir.cpp [792/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/electricfield.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/electricfield.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/electricfield.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/electricfield.cpp [793/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarssimulationsparameters.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarssimulationsparameters.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarssimulationsparameters.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/colvars/colvarssimulationsparameters.cpp [794/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmforceprovider_stub.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmforceprovider_stub.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmforceprovider_stub.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/qmmm/qmmmforceprovider_stub.cpp [795/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmforceproviderstate.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmforceproviderstate.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmforceproviderstate.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/qmmm/qmmmforceproviderstate.cpp [796/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/plumed/plumedOptions.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/plumed/plumedOptions.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/plumed/plumedOptions.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/plumed/plumedOptions.cpp [797/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/awh.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/awh.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/awh.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/awh/awh.cpp [798/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/lincs.cpp /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/lincs.cpp: In function ‘void gmx::lincs_update_atoms(Lincs*, int, real, ArrayRef, ArrayRef >, ArrayRef, real (*)[3])’: /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/lincs.cpp:513:19: warning: ‘master’ construct deprecated since OpenMP 5.1, use ‘masked’ [-Wdeprecated-openmp] 513 | #pragma omp master | ^ /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/lincs.cpp: In function ‘void gmx::do_lincs(ArrayRefWithPadding >, ArrayRefWithPadding >, const real (*)[3], t_pbc*, Lincs*, int, ArrayRef, gmx_domdec_t*, bool, real, bool*, real, ArrayRef >, bool, real (*)[3], gmx_wallcycle*)’: /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/lincs.cpp:1189:19: warning: ‘master’ construct deprecated since OpenMP 5.1, use ‘masked’ [-Wdeprecated-openmp] 1189 | #pragma omp master | ^ At top level: cc1plus: note: unrecognized command-line option ‘-Wno-cast-function-type-strict’ may have been intended to silence earlier diagnostics [799/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/listed_internal.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/listed_internal.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/listed_internal.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/listed_forces/listed_internal.cpp [800/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/nnpot/nnpotforceprovider_stub.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/nnpot/nnpotforceprovider_stub.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/nnpot/nnpotforceprovider_stub.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/nnpot/nnpotforceprovider_stub.cpp [801/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sim_util.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sim_util.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sim_util.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/sim_util.cpp [802/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarspreprocessor.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarspreprocessor.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarspreprocessor.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/colvars/colvarspreprocessor.cpp [803/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/listed_forces_gpu_impl.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/listed_forces_gpu_impl.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/listed_forces_gpu_impl.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/listed_forces/listed_forces_gpu_impl.cpp [804/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmminputgenerator.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmminputgenerator.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmminputgenerator.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/qmmm/qmmminputgenerator.cpp [805/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/restcbt.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/restcbt.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/restcbt.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/listed_forces/restcbt.cpp [806/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/update.cpp [807/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/read_params.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/read_params.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/read_params.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/awh/read_params.cpp [808/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfitting.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfitting.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfitting.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/densityfitting/densityfitting.cpp [809/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald_utils.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald_utils.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald_utils.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/ewald_utils.cpp [810/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/disre.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/disre.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/disre.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/listed_forces/disre.cpp [811/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/plumed/plumedMDModule.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/plumed/plumedMDModule.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/plumed/plumedMDModule.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/plumed/plumedMDModule.cpp [812/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingforceprovider.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingforceprovider.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingforceprovider.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/densityfitting/densityfittingforceprovider.cpp [813/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/calculate_spline_moduli.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/calculate_spline_moduli.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/calculate_spline_moduli.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/calculate_spline_moduli.cpp [814/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarproxygromacs.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarproxygromacs.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarproxygromacs.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/colvars/colvarproxygromacs.cpp [815/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/manage_threading.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/manage_threading.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/manage_threading.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/listed_forces/manage_threading.cpp [816/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_program.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_program.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_program.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/pme_gpu_program.cpp [817/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_program_impl.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_program_impl.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_program_impl.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/pme_gpu_program_impl.cpp [818/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/position_restraints.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/position_restraints.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/position_restraints.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/listed_forces/position_restraints.cpp [819/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/long_range_correction.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/long_range_correction.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/long_range_correction.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/long_range_correction.cpp [820/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmm.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmm.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmm.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/qmmm/qmmm.cpp [821/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarsMDModule.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarsMDModule.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarsMDModule.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/colvars/colvarsMDModule.cpp [822/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/ewald.cpp [823/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_pp_comm_gpu_impl.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_pp_comm_gpu_impl.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_pp_comm_gpu_impl.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/pme_pp_comm_gpu_impl.cpp [824/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_spline_work.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_spline_work.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_spline_work.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/pme_spline_work.cpp [825/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/nnpot/nnpot.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/nnpot/nnpot.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/nnpot/nnpot.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/nnpot/nnpot.cpp [826/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gather.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gather.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gather.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/pme_gather.cpp [827/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/listed_forces.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/listed_forces.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/listed_forces.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/listed_forces/listed_forces.cpp [828/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fft/binary_information.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fft/binary_information.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fft/binary_information.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fft/binary_information.cpp [829/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpueventsynchronizer_helpers.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpueventsynchronizer_helpers.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpueventsynchronizer_helpers.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gpu_utils/gpueventsynchronizer_helpers.cpp [830/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/pairs.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/pairs.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/pairs.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/listed_forces/pairs.cpp [831/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_coordinate_receiver_gpu_impl.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_coordinate_receiver_gpu_impl.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_coordinate_receiver_gpu_impl.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/pme_coordinate_receiver_gpu_impl.cpp [832/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_force_sender_gpu_impl.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_force_sender_gpu_impl.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_force_sender_gpu_impl.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/pme_force_sender_gpu_impl.cpp [833/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarsforceprovider.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarsforceprovider.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarsforceprovider.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/colvars/colvarsforceprovider.cpp [834/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vsite.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vsite.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vsite.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/vsite.cpp [835/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biasstate.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biasstate.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biasstate.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/awh/biasstate.cpp [836/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/pmalloc.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/pmalloc.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/pmalloc.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gpu_utils/pmalloc.cpp [837/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/device_stream.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/device_stream.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/device_stream.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gpu_utils/device_stream.cpp [838/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/clfftinitializer.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/clfftinitializer.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/clfftinitializer.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gpu_utils/clfftinitializer.cpp [839/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gpu_utils/gpu_utils.cpp [840/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/nvshmem_manager.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/nvshmem_manager.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/nvshmem_manager.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gpu_utils/nvshmem_manager.cpp [841/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fft/fft.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fft/fft.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fft/fft.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fft/fft.cpp [842/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/binary_information.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/binary_information.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/binary_information.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gpu_utils/binary_information.cpp [843/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/device_context.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/device_context.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/device_context.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gpu_utils/device_context.cpp [844/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/orires.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/orires.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/orires.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/listed_forces/orires.cpp [845/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/device_stream_manager.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/device_stream_manager.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/device_stream_manager.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gpu_utils/device_stream_manager.cpp [846/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fft/calcgrid.cpp [847/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_pp.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_pp.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_pp.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/pme_pp.cpp [848/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils_impl.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils_impl.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils_impl.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gpu_utils/gpu_utils_impl.cpp [849/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/hostallocator.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/hostallocator.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/hostallocator.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gpu_utils/hostallocator.cpp [850/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fft/parallel_3dfft.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fft/parallel_3dfft.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fft/parallel_3dfft.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fft/parallel_3dfft.cpp [851/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fft/fft_fftw3.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fft/fft_fftw3.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fft/fft_fftw3.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fft/fft_fftw3.cpp [852/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/hardware/identifyavx512fmaunits.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/hardware/identifyavx512fmaunits.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/hardware/identifyavx512fmaunits.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/hardware/identifyavx512fmaunits.cpp [853/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_redistribute.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_redistribute.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_redistribute.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/pme_redistribute.cpp [854/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingoptions.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingoptions.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingoptions.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/densityfitting/densityfittingoptions.cpp [855/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/plumed/plumedforceprovider.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/plumed/plumedforceprovider.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/plumed/plumedforceprovider.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/plumed/plumedforceprovider.cpp [856/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_grid.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_grid.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_grid.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/pme_grid.cpp [857/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_load_balancing.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_load_balancing.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_load_balancing.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/pme_load_balancing.cpp [858/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/hardware/device_management.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/hardware/device_management.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/hardware/device_management.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/hardware/device_management.cpp [859/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fft/fft5d.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fft/fft5d.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fft/fft5d.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fft/fft5d.cpp [860/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_spread.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_spread.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_spread.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/pme_spread.cpp [861/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarsoptions.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarsoptions.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarsoptions.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/colvars/colvarsoptions.cpp [862/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/legacymdrunoptions.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrun/legacymdrunoptions.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/legacymdrunoptions.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/legacymdrunoptions.cpp [863/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/legacysimulator.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrun/legacysimulator.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/legacysimulator.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/legacysimulator.cpp [864/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -DGMX_SIMD_ENUM_VALUE="gmx::SimdType::Arm_NeonAsimd" -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/hardware/simd_support.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/hardware/simd_support.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/hardware/simd_support.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/hardware/simd_support.cpp [865/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_solve.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_solve.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_solve.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/pme_solve.cpp [866/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/membedholder.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrun/membedholder.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/membedholder.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/membedholder.cpp [867/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/hardware/device_management_common.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/hardware/device_management_common.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/hardware/device_management_common.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/hardware/device_management_common.cpp [868/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationcontext.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationcontext.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationcontext.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/simulationcontext.cpp [869/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/freeenergy.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/freeenergy.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/freeenergy.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrunutility/freeenergy.cpp [870/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/hardware/detecthardware.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/hardware/detecthardware.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/hardware/detecthardware.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/hardware/detecthardware.cpp [871/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion-gen.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion-gen.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion-gen.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/gromacs/utility/baseversion-gen.cpp [872/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationinputhandle.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationinputhandle.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationinputhandle.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/simulationinputhandle.cpp [873/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/hardware/printhardware.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/hardware/printhardware.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/hardware/printhardware.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/hardware/printhardware.cpp [874/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/print_validation.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/print_validation.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/print_validation.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrunutility/print_validation.cpp [875/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_only.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_only.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_only.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/pme_only.cpp [876/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/bonded.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/bonded.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/bonded.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/listed_forces/bonded.cpp [877/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/printtime.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/printtime.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/printtime.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrunutility/printtime.cpp [878/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/logging.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/logging.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/logging.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrunutility/logging.cpp [879/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/nnpot/nnpotoptions.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/nnpot/nnpotoptions.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/nnpot/nnpotoptions.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/nnpot/nnpotoptions.cpp [880/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/state_propagator_data_gpu_impl.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/state_propagator_data_gpu_impl.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/state_propagator_data_gpu_impl.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdtypes/state_propagator_data_gpu_impl.cpp [881/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/mdmodulesnotifiers.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/mdmodulesnotifiers.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/mdmodulesnotifiers.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrunutility/mdmodulesnotifiers.cpp [882/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationinput.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationinput.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationinput.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/simulationinput.cpp [883/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/plainpairlistranges.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/plainpairlistranges.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/plainpairlistranges.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrunutility/plainpairlistranges.cpp [884/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/multisim.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/multisim.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/multisim.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrunutility/multisim.cpp [885/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/md5.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/md5.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/md5.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/md5.cpp [886/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/binary_information.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrun/binary_information.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/binary_information.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/binary_information.cpp [887/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/hardware/cpuinfo.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/hardware/cpuinfo.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/hardware/cpuinfo.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/hardware/cpuinfo.cpp [888/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/replicaexchange.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrun/replicaexchange.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/replicaexchange.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/replicaexchange.cpp [889/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/filetypes.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/filetypes.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/filetypes.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/filetypes.cpp [890/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmoptions.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmoptions.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmoptions.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/qmmm/qmmmoptions.cpp [891/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/espio.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/espio.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/espio.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/espio.cpp [892/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/confio.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/confio.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/confio.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/confio.cpp [893/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulatorbuilder.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulatorbuilder.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulatorbuilder.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/simulatorbuilder.cpp [894/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio_xdr.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio_xdr.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio_xdr.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/gmxfio_xdr.cpp [895/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/gmxfio.cpp [896/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/mimic.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrun/mimic.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/mimic.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/mimic.cpp [897/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/g96io.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/g96io.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/g96io.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/g96io.cpp [898/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/oenv.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/oenv.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/oenv.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/oenv.cpp [899/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/mrcserializer.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/mrcserializer.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/mrcserializer.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/mrcserializer.cpp [900/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/mrcdensitymapheader.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/mrcdensitymapheader.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/mrcdensitymapheader.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/mrcdensitymapheader.cpp [901/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/timecontrol.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/timecontrol.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/timecontrol.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/timecontrol.cpp [902/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/libxdrf.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/libxdrf.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/libxdrf.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/libxdrf.cpp [903/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/mtxio.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/mtxio.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/mtxio.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/mtxio.cpp [904/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/handlerestart.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/handlerestart.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/handlerestart.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrunutility/handlerestart.cpp [905/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/rerun.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrun/rerun.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/rerun.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/rerun.cpp [906/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/groio.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/groio.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/groio.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/groio.cpp [907/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/enxio.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/enxio.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/enxio.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/enxio.cpp [908/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/mdmodules.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrun/mdmodules.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/mdmodules.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/mdmodules.cpp [909/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/mrcdensitymap.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/mrcdensitymap.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/mrcdensitymap.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/mrcdensitymap.cpp [910/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/warninp.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/warninp.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/warninp.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/warninp.cpp [911/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/xdrd.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/xdrd.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/xdrd.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/xdrd.cpp [912/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/trrio.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/trrio.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/trrio.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/trrio.cpp [913/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/threadaffinity.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/threadaffinity.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/threadaffinity.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrunutility/threadaffinity.cpp [914/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/hardware/hardwaretopology.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/hardware/hardwaretopology.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/hardware/hardwaretopology.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/hardware/hardwaretopology.cpp [915/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/xtcio.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/xtcio.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/xtcio.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/xtcio.cpp [916/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/writeps.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/writeps.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/writeps.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/writeps.cpp [917/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/mempool.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/mempool.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/mempool.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/mempool.cpp [918/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/shellfc.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrun/shellfc.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/shellfc.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/shellfc.cpp [919/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/pme.cpp [920/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/centerofmass.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/centerofmass.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/centerofmass.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/centerofmass.cpp [921/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/position.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/position.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/position.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/position.cpp [922/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/xdr_serializer.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/xdr_serializer.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/xdr_serializer.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/xdr_serializer.cpp [923/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/pdbio.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/pdbio.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/pdbio.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/pdbio.cpp [924/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/selvalue.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/selvalue.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/selvalue.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/selvalue.cpp [925/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/trxio.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/trxio.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/trxio.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/trxio.cpp [926/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/selmethod.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/selmethod.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/selmethod.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/selmethod.cpp [927/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/xvgr.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/xvgr.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/xvgr.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/xvgr.cpp [928/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/tngio.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/tngio.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/tngio.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/tngio.cpp [929/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/evaluate.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/evaluate.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/evaluate.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/evaluate.cpp [930/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/poscalc.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/poscalc.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/poscalc.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/poscalc.cpp [931/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_distance.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_distance.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_distance.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/sm_distance.cpp [932/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/scanner_internal.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/scanner_internal.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/scanner_internal.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/scanner_internal.cpp [933/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoptionbehavior.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoptionbehavior.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoptionbehavior.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/selectionoptionbehavior.cpp [934/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_compare.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_compare.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_compare.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/sm_compare.cpp [935/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/nbsearch.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/nbsearch.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/nbsearch.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/nbsearch.cpp [936/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/tpi.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrun/tpi.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/tpi.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/tpi.cpp /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/tpi.cpp: In member function ‘std::pair gmx::TestParticleInsertion::performSingleInsertion(double, int64_t, bool, const gmx::RVec&, t_state*, gmx::MdrunScheduleWorkload*, gmx_wallcycle*, t_nrnb*)’: /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/tpi.cpp:497:85: note: parameter passing for argument of type ‘std::pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 497 | t_nrnb* nrnb) | ^ [937/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/selection.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/selection.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/selection.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/selection.cpp [938/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/readinp.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/readinp.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/readinp.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/readinp.cpp [939/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoptionmanager.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoptionmanager.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoptionmanager.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/selectionoptionmanager.cpp [940/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_position.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_position.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_position.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/sm_position.cpp [941/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_merge.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_merge.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_merge.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/sm_merge.cpp [942/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_permute.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_permute.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_permute.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/sm_permute.cpp [943/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DTMPI_USE_VISIBILITY -Dnblib_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -Wno-cast-function-type-strict -MD -MT api/nblib/CMakeFiles/nblib.dir/box.cpp.o -MF api/nblib/CMakeFiles/nblib.dir/box.cpp.o.d -o api/nblib/CMakeFiles/nblib.dir/box.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib/box.cpp [944/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_insolidangle.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_insolidangle.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_insolidangle.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/sm_insolidangle.cpp [945/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/selhelp.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/selhelp.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/selhelp.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/selhelp.cpp [946/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/selelem.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/selelem.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/selelem.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/selelem.cpp [947/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/indexutil.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/indexutil.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/indexutil.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/indexutil.cpp [948/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/minimize.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrun/minimize.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/minimize.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/minimize.cpp [949/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DTMPI_USE_VISIBILITY -Dnblib_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -Wno-cast-function-type-strict -MD -MT api/nblib/CMakeFiles/nblib.dir/particletype.cpp.o -MF api/nblib/CMakeFiles/nblib.dir/particletype.cpp.o.d -o api/nblib/CMakeFiles/nblib.dir/particletype.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib/particletype.cpp [950/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DTMPI_USE_VISIBILITY -Dnblib_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -Wno-cast-function-type-strict -MD -MT api/nblib/CMakeFiles/nblib.dir/topologyhelpers.cpp.o -MF api/nblib/CMakeFiles/nblib.dir/topologyhelpers.cpp.o.d -o api/nblib/CMakeFiles/nblib.dir/topologyhelpers.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib/topologyhelpers.cpp [951/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_same.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_same.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_same.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/sm_same.cpp [952/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DTMPI_USE_VISIBILITY -Dnblib_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -Wno-cast-function-type-strict -MD -MT api/nblib/CMakeFiles/nblib.dir/virials.cpp.o -MF api/nblib/CMakeFiles/nblib.dir/virials.cpp.o.d -o api/nblib/CMakeFiles/nblib.dir/virials.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib/virials.cpp [953/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/md.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrun/md.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/md.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/md.cpp [954/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/symrec.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/symrec.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/symrec.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/symrec.cpp [955/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoption.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoption.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoption.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/selectionoption.cpp [956/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_simple.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_simple.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_simple.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/sm_simple.cpp [957/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -Dgmxapi_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/gmxapi/cpp -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT api/gmxapi/CMakeFiles/gmxapi.dir/cpp/exceptions.cpp.o -MF api/gmxapi/CMakeFiles/gmxapi.dir/cpp/exceptions.cpp.o.d -o api/gmxapi/CMakeFiles/gmxapi.dir/cpp/exceptions.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/gmxapi/cpp/exceptions.cpp [958/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -Dgmxapi_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/gmxapi/cpp -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT api/gmxapi/CMakeFiles/gmxapi.dir/cpp/mdmodule.cpp.o -MF api/gmxapi/CMakeFiles/gmxapi.dir/cpp/mdmodule.cpp.o.d -o api/gmxapi/CMakeFiles/gmxapi.dir/cpp/mdmodule.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/gmxapi/cpp/mdmodule.cpp [959/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -Dgmxapi_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/gmxapi/cpp -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT api/gmxapi/CMakeFiles/gmxapi.dir/cpp/gmxapi.cpp.o -MF api/gmxapi/CMakeFiles/gmxapi.dir/cpp/gmxapi.cpp.o.d -o api/gmxapi/CMakeFiles/gmxapi.dir/cpp/gmxapi.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/gmxapi/cpp/gmxapi.cpp [960/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DTMPI_USE_VISIBILITY -Dnblib_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -Wno-cast-function-type-strict -MD -MT api/nblib/CMakeFiles/nblib.dir/integrator.cpp.o -MF api/nblib/CMakeFiles/nblib.dir/integrator.cpp.o.d -o api/nblib/CMakeFiles/nblib.dir/integrator.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib/integrator.cpp [961/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/parsetree.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/parsetree.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/parsetree.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/parsetree.cpp [962/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -Dgmxapi_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/gmxapi/cpp -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT api/gmxapi/CMakeFiles/gmxapi.dir/cpp/status.cpp.o -MF api/gmxapi/CMakeFiles/gmxapi.dir/cpp/status.cpp.o.d -o api/gmxapi/CMakeFiles/gmxapi.dir/cpp/status.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/gmxapi/cpp/status.cpp [963/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -Dgmxapi_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/gmxapi/cpp -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT api/gmxapi/CMakeFiles/gmxapi.dir/cpp/version.cpp.o -MF api/gmxapi/CMakeFiles/gmxapi.dir/cpp/version.cpp.o.d -o api/gmxapi/CMakeFiles/gmxapi.dir/cpp/version.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/gmxapi/cpp/version.cpp [964/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -Dgmxapi_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/gmxapi/cpp -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT api/gmxapi/CMakeFiles/gmxapi.dir/cpp/resourceassignment.cpp.o -MF api/gmxapi/CMakeFiles/gmxapi.dir/cpp/resourceassignment.cpp.o.d -o api/gmxapi/CMakeFiles/gmxapi.dir/cpp/resourceassignment.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/gmxapi/cpp/resourceassignment.cpp [965/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DTMPI_USE_VISIBILITY -Dnblib_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -Wno-cast-function-type-strict -MD -MT api/nblib/CMakeFiles/nblib.dir/util/setup.cpp.o -MF api/nblib/CMakeFiles/nblib.dir/util/setup.cpp.o.d -o api/nblib/CMakeFiles/nblib.dir/util/setup.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib/util/setup.cpp [966/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/params.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/params.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/params.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/params.cpp [967/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DTMPI_USE_VISIBILITY -Dnblib_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -Wno-cast-function-type-strict -MD -MT api/nblib/CMakeFiles/nblib.dir/particlesequencer.cpp.o -MF api/nblib/CMakeFiles/nblib.dir/particlesequencer.cpp.o.d -o api/nblib/CMakeFiles/nblib.dir/particlesequencer.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib/particlesequencer.cpp [968/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/selectioncollection.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/selectioncollection.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/selectioncollection.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/selectioncollection.cpp [969/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -Dgmxapi_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/gmxapi/cpp -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT api/gmxapi/CMakeFiles/gmxapi.dir/cpp/workflow.cpp.o -MF api/gmxapi/CMakeFiles/gmxapi.dir/cpp/workflow.cpp.o.d -o api/gmxapi/CMakeFiles/gmxapi.dir/cpp/workflow.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/gmxapi/cpp/workflow.cpp [970/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -Dgmxapi_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/gmxapi/cpp -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT api/gmxapi/CMakeFiles/gmxapi.dir/cpp/md.cpp.o -MF api/gmxapi/CMakeFiles/gmxapi.dir/cpp/md.cpp.o.d -o api/gmxapi/CMakeFiles/gmxapi.dir/cpp/md.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/gmxapi/cpp/md.cpp [971/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/compiler.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/compiler.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/compiler.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/compiler.cpp [972/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DTMPI_USE_VISIBILITY -Dnblib_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -Wno-cast-function-type-strict -MD -MT api/nblib/CMakeFiles/nblib.dir/listed_forces/transformations.cpp.o -MF api/nblib/CMakeFiles/nblib.dir/listed_forces/transformations.cpp.o.d -o api/nblib/CMakeFiles/nblib.dir/listed_forces/transformations.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib/listed_forces/transformations.cpp [973/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fopenmp -MD -MT share/template/CMakeFiles/template.dir/template.cpp.o -MF share/template/CMakeFiles/template.dir/template.cpp.o.d -o share/template/CMakeFiles/template.dir/template.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/share/template/template.cpp [974/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -Dgmxapi_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/gmxapi/cpp -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT api/gmxapi/CMakeFiles/gmxapi.dir/cpp/system.cpp.o -MF api/gmxapi/CMakeFiles/gmxapi.dir/cpp/system.cpp.o.d -o api/gmxapi/CMakeFiles/gmxapi.dir/cpp/system.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/gmxapi/cpp/system.cpp [975/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -Dgmxapi_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/gmxapi/cpp -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT api/gmxapi/CMakeFiles/gmxapi.dir/cpp/mdsignals.cpp.o -MF api/gmxapi/CMakeFiles/gmxapi.dir/cpp/mdsignals.cpp.o.d -o api/gmxapi/CMakeFiles/gmxapi.dir/cpp/mdsignals.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/gmxapi/cpp/mdsignals.cpp [976/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DTMPI_USE_VISIBILITY -Dnblib_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -Wno-cast-function-type-strict -MD -MT api/nblib/CMakeFiles/nblib.dir/nbnxmsetuphelpers.cpp.o -MF api/nblib/CMakeFiles/nblib.dir/nbnxmsetuphelpers.cpp.o.d -o api/nblib/CMakeFiles/nblib.dir/nbnxmsetuphelpers.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib/nbnxmsetuphelpers.cpp [977/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DTMPI_USE_VISIBILITY -Dnblib_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -Wno-cast-function-type-strict -MD -MT api/nblib/CMakeFiles/nblib.dir/interactions.cpp.o -MF api/nblib/CMakeFiles/nblib.dir/interactions.cpp.o.d -o api/nblib/CMakeFiles/nblib.dir/interactions.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib/interactions.cpp [978/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DTMPI_USE_VISIBILITY -Dnblib_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -Wno-cast-function-type-strict -MD -MT api/nblib/CMakeFiles/nblib.dir/gmxcalculatorcpu.cpp.o -MF api/nblib/CMakeFiles/nblib.dir/gmxcalculatorcpu.cpp.o.d -o api/nblib/CMakeFiles/nblib.dir/gmxcalculatorcpu.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib/gmxcalculatorcpu.cpp [979/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DTMPI_USE_VISIBILITY -Dnblib_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -Wno-cast-function-type-strict -MD -MT api/nblib/CMakeFiles/nblib.dir/listed_forces/conversions.cpp.o -MF api/nblib/CMakeFiles/nblib.dir/listed_forces/conversions.cpp.o.d -o api/nblib/CMakeFiles/nblib.dir/listed_forces/conversions.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib/listed_forces/conversions.cpp [980/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -Dgmxapi_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/gmxapi/cpp -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT api/gmxapi/CMakeFiles/gmxapi.dir/cpp/session.cpp.o -MF api/gmxapi/CMakeFiles/gmxapi.dir/cpp/session.cpp.o.d -o api/gmxapi/CMakeFiles/gmxapi.dir/cpp/session.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/gmxapi/cpp/session.cpp [981/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -Dgmxapi_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/gmxapi/cpp -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT api/gmxapi/CMakeFiles/gmxapi.dir/cpp/context.cpp.o -MF api/gmxapi/CMakeFiles/gmxapi.dir/cpp/context.cpp.o.d -o api/gmxapi/CMakeFiles/gmxapi.dir/cpp/context.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/gmxapi/cpp/context.cpp [982/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/checkpoint.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/checkpoint.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/checkpoint.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/checkpoint.cpp [983/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DTMPI_USE_VISIBILITY -Dnblib_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -Wno-cast-function-type-strict -MD -MT api/nblib/CMakeFiles/nblib.dir/simulationstate.cpp.o -MF api/nblib/CMakeFiles/nblib.dir/simulationstate.cpp.o.d -o api/nblib/CMakeFiles/nblib.dir/simulationstate.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib/simulationstate.cpp [984/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DTMPI_USE_VISIBILITY -Dnblib_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -Wno-cast-function-type-strict -MD -MT api/nblib/CMakeFiles/nblib.dir/tpr.cpp.o -MF api/nblib/CMakeFiles/nblib.dir/tpr.cpp.o.d -o api/nblib/CMakeFiles/nblib.dir/tpr.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib/tpr.cpp [985/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DTMPI_USE_VISIBILITY -Dnblib_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -Wno-cast-function-type-strict -MD -MT api/nblib/CMakeFiles/nblib.dir/listed_forces/convertGmxToNblib.cpp.o -MF api/nblib/CMakeFiles/nblib.dir/listed_forces/convertGmxToNblib.cpp.o.d -o api/nblib/CMakeFiles/nblib.dir/listed_forces/convertGmxToNblib.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib/listed_forces/convertGmxToNblib.cpp [986/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/runner.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrun/runner.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/runner.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/runner.cpp [987/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DTMPI_USE_VISIBILITY -Dnblib_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -Wno-cast-function-type-strict -MD -MT api/nblib/CMakeFiles/nblib.dir/molecules.cpp.o -MF api/nblib/CMakeFiles/nblib.dir/molecules.cpp.o.d -o api/nblib/CMakeFiles/nblib.dir/molecules.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib/molecules.cpp [988/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fopenmp -MD -MT api/nblib/samples/CMakeFiles/argon-forces-integration.dir/argon-forces-integration.cpp.o -MF api/nblib/samples/CMakeFiles/argon-forces-integration.dir/argon-forces-integration.cpp.o.d -o api/nblib/samples/CMakeFiles/argon-forces-integration.dir/argon-forces-integration.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib/samples/argon-forces-integration.cpp [989/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/tpxio.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/tpxio.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/tpxio.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/tpxio.cpp [990/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/matio.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/matio.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/matio.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/matio.cpp [991/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -Dgmxapi_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/gmxapi/cpp -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT api/gmxapi/CMakeFiles/gmxapi.dir/cpp/tpr.cpp.o -MF api/gmxapi/CMakeFiles/gmxapi.dir/cpp/tpr.cpp.o.d -o api/gmxapi/CMakeFiles/gmxapi.dir/cpp/tpr.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/gmxapi/cpp/tpr.cpp [992/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fopenmp -MD -MT api/nblib/samples/CMakeFiles/methane-water-integration.dir/methane-water-integration.cpp.o -MF api/nblib/samples/CMakeFiles/methane-water-integration.dir/methane-water-integration.cpp.o.d -o api/nblib/samples/CMakeFiles/methane-water-integration.dir/methane-water-integration.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib/samples/methane-water-integration.cpp [993/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_keywords.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_keywords.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_keywords.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/sm_keywords.cpp [994/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DTMPI_USE_VISIBILITY -Dnblib_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -Wno-cast-function-type-strict -MD -MT api/nblib/CMakeFiles/nblib.dir/listed_forces/calculator.cpp.o -MF api/nblib/CMakeFiles/nblib.dir/listed_forces/calculator.cpp.o.d -o api/nblib/CMakeFiles/nblib.dir/listed_forces/calculator.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib/listed_forces/calculator.cpp [995/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/freeenergykernel.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/freeenergykernel.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/freeenergykernel.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/freeenergykernel.cpp [996/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DTMPI_USE_VISIBILITY -Dnblib_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -Wno-cast-function-type-strict -MD -MT api/nblib/CMakeFiles/nblib.dir/topology.cpp.o -MF api/nblib/CMakeFiles/nblib.dir/topology.cpp.o.d -o api/nblib/CMakeFiles/nblib.dir/topology.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/nblib/topology.cpp [997/1006] : && /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=src/gromacs/CMakeFiles/libgromacs.dir/link.d -Wl,-soname,libgromacs_d.so.11 -o lib/libgromacs_d.so.11.0.0 src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/alltoall.cpp.o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_protocol.cpp.o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/barrier.cpp.o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_send_recv.cpp.o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/bcast.cpp.o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_wait.cpp.o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/collective.cpp.o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/profile.cpp.o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/comm.cpp.o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/reduce.cpp.o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/event.cpp.o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/reduce_fast.cpp.o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/gather.cpp.o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/scatter.cpp.o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/group.cpp.o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_init.cpp.o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/topology.cpp.o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/list.cpp.o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/type.cpp.o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/scan.cpp.o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/numa_malloc.cpp.o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/once.cpp.o src/gromacs/selection/CMakeFiles/scanner.dir/parser.cpp.o src/gromacs/selection/CMakeFiles/scanner.dir/scanner.cpp.o src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr.cpp.o src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr_array.cpp.o src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr_float.cpp.o src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr_stdio.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar_neuralnetworkcompute.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvaratoms.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abf.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abmd.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_alb.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram_reweight_amd.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_meta.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_opes.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_restraint.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_alchlambda.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_angles.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_apath.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_combination.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_coordnums.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_distances.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_gpath.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_neuralnetwork.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_protein.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_rotations.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_torchann.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_volmaps.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvardeps.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid_integrate.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarmodule.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparams.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparse.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_io.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_replicas.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_system.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_tcl.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_volmaps.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvars_memstream.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_bias.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_colvar.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvartypes.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarvalue.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/nr_jacobi.cpp.o src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/energyterm.cpp.o src/gromacs/fmm/CMakeFiles/fmm.dir/fmm_mdmodule.cpp.o src/gromacs/fmm/CMakeFiles/fmm.dir/fmm_mdpoptions.cpp.o src/gromacs/fmm/CMakeFiles/fmm.dir/fmm_mdpvalidator.cpp.o src/gromacs/fmm/CMakeFiles/fmm.dir/fmmforceproviderbuilder.cpp.o src/gromacs/fmm/CMakeFiles/fmm.dir/fmmoptions.cpp.o src/gromacs/fmm/CMakeFiles/fmm.dir/fmmforceprovider_stub.cpp.o src/gromacs/fileio/h5md/CMakeFiles/h5md.dir/h5md.cpp.o src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/binary_information.cpp.o src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/eigensolver.cpp.o src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/matrix.cpp.o src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/andersentemperaturecoupling.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/constraintelement.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/domdechelper.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/energydata.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/expandedensembleelement.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/firstorderpressurecoupling.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/forceelement.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/freeenergyperturbationdata.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/modularsimulator.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/mttk.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/nosehooverchains.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/pmeloadbalancehelper.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/propagator.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/pullelement.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/referencetemperaturemanager.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/signallers.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/simulatoralgorithm.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/topologyholder.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/velocityscalingtemperaturecoupling.cpp.o src/gromacs/options/CMakeFiles/options.dir/abstractoption.cpp.o src/gromacs/options/CMakeFiles/options.dir/abstractsection.cpp.o src/gromacs/options/CMakeFiles/options.dir/basicoptions.cpp.o src/gromacs/options/CMakeFiles/options.dir/behaviorcollection.cpp.o src/gromacs/options/CMakeFiles/options.dir/filenameoption.cpp.o src/gromacs/options/CMakeFiles/options.dir/filenameoptionmanager.cpp.o src/gromacs/options/CMakeFiles/options.dir/options.cpp.o src/gromacs/options/CMakeFiles/options.dir/optionsassigner.cpp.o src/gromacs/options/CMakeFiles/options.dir/optionsection.cpp.o src/gromacs/options/CMakeFiles/options.dir/optionsvisitor.cpp.o src/gromacs/options/CMakeFiles/options.dir/timeunitmanager.cpp.o src/gromacs/options/CMakeFiles/options.dir/treesupport.cpp.o src/gromacs/pulling/CMakeFiles/pulling.dir/output.cpp.o src/gromacs/pulling/CMakeFiles/pulling.dir/pull.cpp.o src/gromacs/pulling/CMakeFiles/pulling.dir/pull_rotation.cpp.o src/gromacs/pulling/CMakeFiles/pulling.dir/pullcoordexpressionparser.cpp.o src/gromacs/pulling/CMakeFiles/pulling.dir/pullutil.cpp.o src/gromacs/pulling/CMakeFiles/pulling.dir/transformationcoordinate.cpp.o src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/decidegpuusage.cpp.o src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/decidesimulationworkload.cpp.o src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/findallgputasks.cpp.o src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/reportgpuusage.cpp.o src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/resourcedivision.cpp.o src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/taskassignment.cpp.o src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/usergpuids.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/any.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/basenetwork.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/booltype.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/compare.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/coolstuff.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/cstringutil.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/datafilefinder.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/directoryenumerator.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/errorcodes.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/errorformat.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/exceptions.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/fatalerror.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/fileredirector.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/filestream.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/futil.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxassert.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxomp.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/ikeyvaluetreeerror.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/init.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/int64_to_int.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetree.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreemdpwriter.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreetransform.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/logger.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/loggerbuilder.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/message_string_collector.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/mpicomm.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/mpiinfo.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/niceheader.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/path.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/physicalnodecommunicator.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/pleasecite.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/programcontext.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/smalloc.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/strconvert.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/strdb.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/stringstream.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/stringutil.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/sysinfo.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/textreader.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/veccompare.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/vecdump.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/atomdata.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_setup.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_system.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/exclusionchecker.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/freeenergydispatch.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/freeenergykernel.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/grid.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/gridset.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernel_common.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kerneldispatch.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_gpu_ref.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_1x1.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_4x4.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_prune.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_geometry.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_setup.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist_simd_kernel.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist_tuning.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistparams.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistset.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistsets.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistwork.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairsearch.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/prunekerneldispatch.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/simd_energy_accumulator.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/simd_prune_kernel.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpwriter.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineinit.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodule.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodulemanager.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodulesettings.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineoptionsmodule.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/commandline/filenm.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/commandline/pargs.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/commandline/shellcompletions.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/commandline/viewit.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/atomdistribution.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/box.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/cellsizes.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/collect.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/computemultibodycutoffs.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/distribute.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlb.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/domainpaircomm.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_zones.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/dump.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/haloexchange.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/haloexchangesetup.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomset.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetdata.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetmanager.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/localtopology.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/localtopologychecker.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/makebondedlinks.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/mdsetup.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/nsgrid.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/partition.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/reversetopology.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/utility.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/gpuhaloexchange_impl.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/math/coordinatetransformation.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/math/densityfit.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/math/densityfittingforce.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/math/do_fit.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/math/exponentialmovingaverage.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/math/functions.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/math/gausstransform.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/math/invertmatrix.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/math/neldermead.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/math/nrjac.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/math/optimization.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/math/utilities.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/awh_history.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/checkpointdata.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/commrec.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/df_history.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/energyhistory.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/forcebuffers.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/group.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/iforceprovider.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/inputrec.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/interaction_const.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/md_enums.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/multipletimestepping.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/observableshistory.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/observablesreducer.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/state.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/threaded_force_buffer.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpformat.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helptopic.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpwritercontext.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/rstparser.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/boxutilities.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/com.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/mshift.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc_simd.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbcenums.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbcmethods.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/rmpbc.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/random/seed.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/random/tabulatednormaldistribution.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/restraint/manager.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/restraint/restraintmdmodule.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/serialization/inmemoryserializer.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/serialization/keyvaluetreeserializer.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/tables/cubicsplinetable.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/tables/forcetable.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/tables/quadraticsplinetable.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/tables/splineutil.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/timing/cyclecounter.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/timing/external_tracing.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/timing/wallcycle.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/timing/walltime_accounting.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/topology/atomprop.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/topology/atoms.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/topology/atomsbuilder.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/topology/block.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/topology/embedded_system_preprocessing.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/topology/exclusionblocks.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/topology/forcefieldparameters.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/topology/idef.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/topology/ifunc.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/topology/index.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/topology/invblock.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/topology/mtop_atomloops.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/topology/mtop_util.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/topology/residuetypes.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/topology/symtab.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/topology/topology.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/topology/topsort.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectory/energyframe.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectory/trajectoryframe.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/swap/swapcoords.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/essentialdynamics/edsam.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/imd/imd.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/imd/imdsocket.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mimic/communicator_stub.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mimic/utilities.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/anadih.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/angle_correction.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/binsearch.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/cluster_methods.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/cmat.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/dens_filter.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/dlist.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/eigio.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/fitahx.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_anaeig.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_analyze.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_angle.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_awh.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_bar.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_bundle.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_chi.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_cluster.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_clustsize.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_confrms.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_covar.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_current.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_density.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_densmap.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_densorder.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dielectric.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dipoles.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_disre.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dos.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dyecoupl.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_enemat.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_energy.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_filter.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_gyrate.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_h2order.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_hbond.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_helix.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_helixorient.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_hydorder.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_lie.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_make_edi.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_mdmat.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_mindist.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmeig.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmens.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmr.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmtraj.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_order.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_polystat.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_potential.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_principal.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rama.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rms.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rmsdist.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rmsf.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rotacf.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rotmat.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_saltbr.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sans.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_saxs.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sham.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sigeps.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sorient.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_spatial.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_spol.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_tcaf.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_traj.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_trjorder.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_vanhove.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_velacc.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_wham.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_wheel.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_xpm2ps.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/hxprops.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/nrama.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/nsfactor.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/powerspect.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/pp2shift.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/princ.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/sfactor.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/thermochemistry.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/add_par.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/calch.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/compute_io.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/convparm.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/editconf.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/fflibutil.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_ad.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_maxwell_velocities.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_vsite.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genconf.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genhydro.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genion.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genrestr.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gmxcpp.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_atomtype.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_bond_atomtype.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_nextnb.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/grompp.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/h_db.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/hackblock.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/hizzie.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/insert_molecules.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/makeexclusiondistances.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/massrepartitioning.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/nm2type.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2gmx.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2top.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pgutil.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readir.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readpull.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readrot.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/resall.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/solvate.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/specbond.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/ter_db.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/tomorse.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topdirs.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topio.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/toppush.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topshake.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/toputil.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/vsite_parm.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/x2top.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/xlate.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/autocorr.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/crosscorr.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/expfit.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/gmx_lmcurve.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/integrate.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/manyautocorrelation.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/polynomials.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/statistics/statistics.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/abstractdata.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/analysisdata.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/arraydata.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/dataframe.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datamodule.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datamodulemanager.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/dataproxy.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datastorage.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/average.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/displacement.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/frameaverager.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/histogram.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/lifetime.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/plot.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/coordinatefile.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/frameconverters/register.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadaptercontainer.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/outputselector.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setatoms.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setforces.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setprecision.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setstarttime.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/settimestep.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setvelocities.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/requirements.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/analysismodule.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/analysissettings.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/cmdlinerunner.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/angle.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/convert_trj.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/distance.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/dssp.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/extract_cluster.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/freevolume.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/gyrate.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/hbond.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/isotope.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/msd.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/pairdist.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/rdf.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/sasa.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering-debye-sans.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering-debye-saxs.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering-debye.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scatteringfactors.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/select.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/surfacearea.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/trajectory.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/runnercommon.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/topologyinformation.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/tools/check.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/tools/convert_tpr.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/tools/dump.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/tools/eneconv.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/tools/make_ndx.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/tools/mk_angndx.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/tools/pme_error.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/tools/report_methods.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/tools/trjcat.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/tools/trjconv.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/tools/tune_pme.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/conformation_utilities.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/network.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nrnb.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/boxdeformation.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/broadcaststructs.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calc_verletbuf.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calcmu.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calcvir.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/checkpointhandler.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constr.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constraint_gpu_helpers.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constraintrange.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/coupling.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/dispersioncorrection.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/ebin.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/enerdata_utils.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/energydrifttracker.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/energyoutput.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/expanded.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/expanded_internal.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/force.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/freeenergyparameters.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/gmx_omp_nthreads.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/lincs_constraint_group_sizes.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/md_support.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdatoms.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdgraph_gpu_impl.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/membed.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/resethandler.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rf_util.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/settle.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/shake.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sighandler.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sim_util.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/simulationsignal.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/splitter.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stat.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stophandler.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/tgroup.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update_vv.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroups.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroupscog.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vcm.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vsite.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wholemoleculetransform.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/gpuforcereduction_impl_stubs.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update_constrain_gpu_impl_stubs.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/electricfield.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/awh.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/bias.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biasgrid.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biasparams.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biassharing.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biasstate.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biaswriter.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/coordstate.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/correlationgrid.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/correlationhistory.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/correlationtensor.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/histogramsize.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/pointstate.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/read_params.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfitting.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingamplitudelookup.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingforceprovider.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingoptions.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingoutputprovider.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingparameters.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmminputgenerator.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmforceproviderstate.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmoptions.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmm.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmforceprovider_stub.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarsMDModule.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarsoptions.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarspreprocessor.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarssimulationsparameters.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarsforceprovider.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarproxygromacs.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/plumed/plumedforceprovider.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/plumed/plumedOptions.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/plumed/plumedMDModule.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/nnpot/binary_information.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/nnpot/nnpotoptions.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/nnpot/nnpot.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/nnpot/nnpotforceprovider_stub.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/bonded.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/disre.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/listed_forces_gpu_impl.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/listed_forces.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/listed_internal.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/manage_threading.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/orires.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/pairs.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/position_restraints.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/restcbt.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/calculate_spline_moduli.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald_utils.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/long_range_correction.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gather.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_grid.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_load_balancing.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_only.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_pp.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_redistribute.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_solve.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_spline_work.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_spread.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_program.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_program_impl.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_pp_comm_gpu_impl.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_coordinate_receiver_gpu_impl.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_force_sender_gpu_impl.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fft/binary_information.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fft/fft.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fft/fft5d.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fft/parallel_3dfft.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fft/fft_fftw3.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/binary_information.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/clfftinitializer.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/device_stream_manager.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpueventsynchronizer_helpers.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/hostallocator.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/nvshmem_manager.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/device_context.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/device_stream.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils_impl.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/pmalloc.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/hardware/cpuinfo.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/hardware/detecthardware.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/hardware/device_management_common.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/hardware/hardwaretopology.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/hardware/printhardware.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/hardware/identifyavx512fmaunits.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/hardware/simd_support.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/hardware/device_management.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/binary_information.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/legacymdrunoptions.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/legacysimulator.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/md.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/mdmodules.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/membedholder.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/mimic.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/minimize.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/replicaexchange.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/rerun.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/runner.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/shellfc.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationcontext.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationinput.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationinputhandle.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulatorbuilder.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/tpi.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/freeenergy.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/handlerestart.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/logging.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/mdmodulesnotifiers.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/multisim.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/plainpairlistranges.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/print_validation.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/printtime.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/threadaffinity.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/state_propagator_data_gpu_impl.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion-gen.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/checkpoint.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/confio.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/enxio.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/espio.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/filetypes.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/g96io.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio_xdr.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/groio.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/libxdrf.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/matio.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/md5.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/mrcdensitymap.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/mrcdensitymapheader.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/mrcserializer.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/mtxio.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/oenv.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/pdbio.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/readinp.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/timecontrol.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/tngio.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/tpxio.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/trrio.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/trxio.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/warninp.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/writeps.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/xdr_serializer.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/xdrd.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/xtcio.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/xvgr.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/centerofmass.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/compiler.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/evaluate.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/indexutil.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/mempool.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/nbsearch.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/params.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/parsetree.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/poscalc.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/position.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/scanner_internal.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/selection.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/selectioncollection.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoption.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoptionbehavior.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoptionmanager.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/selelem.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/selhelp.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/selmethod.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/selvalue.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_compare.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_distance.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_insolidangle.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_keywords.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_merge.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_permute.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_position.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_same.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_simple.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/symrec.cpp.o /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lflexiblas -lm -ltng_io /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a /usr/lib64/libmuparser.so.2.3.5 /usr/lib64/liblmfit.so -ldl && : In member function ‘performSingleInsertion’: lto1: note: parameter passing for argument of type ‘struct pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 [998/1006] /usr/bin/cmake -E cmake_symlink_library lib/libgromacs_d.so.11.0.0 lib/libgromacs_d.so.11 lib/libgromacs_d.so && : [999/1006] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=share/template/CMakeFiles/template.dir/link.d share/template/CMakeFiles/template.dir/template.cpp.o -o bin/template -Wl,-rpath,/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/lib lib/libgromacs_d.so.11.0.0 -lm /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a && : [1000/1006] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=src/programs/CMakeFiles/gmx.dir/link.d src/programs/CMakeFiles/gmx_objlib.dir/gmx.cpp.o src/programs/CMakeFiles/gmx_objlib.dir/legacymodules.cpp.o src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o bin/gmx_d -Wl,-rpath,/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/lib: lib/libgromacs_d.so.11.0.0 -lm /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a && : [1001/1006] : && /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=api/gmxapi/CMakeFiles/gmxapi.dir/link.d -Wl,-soname,libgmxapi_d.so.0 -o lib/libgmxapi_d.so.0.4.0 api/gmxapi/CMakeFiles/gmxapi.dir/cpp/resourceassignment.cpp.o api/gmxapi/CMakeFiles/gmxapi.dir/cpp/context.cpp.o api/gmxapi/CMakeFiles/gmxapi.dir/cpp/exceptions.cpp.o api/gmxapi/CMakeFiles/gmxapi.dir/cpp/gmxapi.cpp.o api/gmxapi/CMakeFiles/gmxapi.dir/cpp/md.cpp.o api/gmxapi/CMakeFiles/gmxapi.dir/cpp/mdmodule.cpp.o api/gmxapi/CMakeFiles/gmxapi.dir/cpp/mdsignals.cpp.o api/gmxapi/CMakeFiles/gmxapi.dir/cpp/session.cpp.o api/gmxapi/CMakeFiles/gmxapi.dir/cpp/status.cpp.o api/gmxapi/CMakeFiles/gmxapi.dir/cpp/system.cpp.o api/gmxapi/CMakeFiles/gmxapi.dir/cpp/version.cpp.o api/gmxapi/CMakeFiles/gmxapi.dir/cpp/workflow.cpp.o api/gmxapi/CMakeFiles/gmxapi.dir/cpp/tpr.cpp.o -Wl,-rpath,/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/lib: lib/libgromacs_d.so.11.0.0 -lm /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a && : [1002/1006] /usr/bin/cmake -E cmake_symlink_library lib/libgmxapi_d.so.0.4.0 lib/libgmxapi_d.so.0 lib/libgmxapi_d.so && : [1003/1006] : && /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=api/nblib/CMakeFiles/nblib.dir/link.d -Wl,-soname,libnblib_gmx.so.0 -o lib/libnblib_gmx.so.0.1.0 api/nblib/CMakeFiles/nblib.dir/box.cpp.o api/nblib/CMakeFiles/nblib.dir/gmxcalculatorcpu.cpp.o api/nblib/CMakeFiles/nblib.dir/integrator.cpp.o api/nblib/CMakeFiles/nblib.dir/interactions.cpp.o api/nblib/CMakeFiles/nblib.dir/molecules.cpp.o api/nblib/CMakeFiles/nblib.dir/nbnxmsetuphelpers.cpp.o api/nblib/CMakeFiles/nblib.dir/particlesequencer.cpp.o api/nblib/CMakeFiles/nblib.dir/particletype.cpp.o api/nblib/CMakeFiles/nblib.dir/simulationstate.cpp.o api/nblib/CMakeFiles/nblib.dir/topologyhelpers.cpp.o api/nblib/CMakeFiles/nblib.dir/topology.cpp.o api/nblib/CMakeFiles/nblib.dir/tpr.cpp.o api/nblib/CMakeFiles/nblib.dir/virials.cpp.o api/nblib/CMakeFiles/nblib.dir/listed_forces/calculator.cpp.o api/nblib/CMakeFiles/nblib.dir/listed_forces/transformations.cpp.o api/nblib/CMakeFiles/nblib.dir/listed_forces/conversions.cpp.o api/nblib/CMakeFiles/nblib.dir/listed_forces/convertGmxToNblib.cpp.o api/nblib/CMakeFiles/nblib.dir/util/setup.cpp.o -Wl,-rpath,/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/lib: -lm lib/libgromacs_d.so.11.0.0 -lm /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a /usr/lib64/libmuparser.so.2.3.5 && : [1004/1006] /usr/bin/cmake -E cmake_symlink_library lib/libnblib_gmx.so.0.1.0 lib/libnblib_gmx.so.0 lib/libnblib_gmx.so && : [1005/1006] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=api/nblib/samples/CMakeFiles/argon-forces-integration.dir/link.d api/nblib/samples/CMakeFiles/argon-forces-integration.dir/argon-forces-integration.cpp.o -o bin/argon-forces-integration -Wl,-rpath,/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/lib lib/libnblib_gmx.so.0.1.0 -lm /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -Wl,-rpath-link,/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/lib && : [1006/1006] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=api/nblib/samples/CMakeFiles/methane-water-integration.dir/link.d api/nblib/samples/CMakeFiles/methane-water-integration.dir/methane-water-integration.cpp.o -o bin/methane-water-integration -Wl,-rpath,/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/lib lib/libnblib_gmx.so.0.1.0 -lm /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -Wl,-rpath-link,/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/lib && : + popd ~/build/BUILD/gromacs-2026.3-build/gromacs-2026.3 + test -n '' + for mpi in '' mpich openmpi + test -n mpich + module load mpi/mpich-aarch64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw load mpi/mpich-aarch64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh load mpi/mpich-aarch64 + eval $'LD_LIBRARY_PATH=\'/usr/lib64/mpich/lib\'; export LD_LIBRARY_PATH;\nMPI_COMPILER=\'mpich-aarch64\'; export MPI_COMPILER;\nMANPATH=\'/usr/share/man/mpich-aarch64:/usr/share/man:\'; export MANPATH;\nMPI_INCLUDE=\'/usr/include/mpich-aarch64\'; export MPI_INCLUDE;\nMPI_MAN=\'/usr/share/man/mpich-aarch64\'; export MPI_MAN;\nMPI_PYTHON_SITEARCH=\'%{python2_sitearch}/mpich\'; export MPI_PYTHON_SITEARCH;\n_LMFILES_=\'/usr/share/modulefiles/mpi/mpich-aarch64\'; export _LMFILES_;\nLOADEDMODULES=\'mpi/mpich-aarch64\'; export LOADEDMODULES;\nCMAKE_PREFIX_PATH=\'/usr/lib64/mpich\'; export CMAKE_PREFIX_PATH;\nPKG_CONFIG_PATH=\'/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig\'; export PKG_CONFIG_PATH;\nMPI_PYTHON3_SITEARCH=\'/usr/lib64/python3.15/site-packages/mpich\'; export MPI_PYTHON3_SITEARCH;\nMPI_FORTRAN_MOD_DIR=\'/usr/lib64/gfortran/modules/mpich\'; export MPI_FORTRAN_MOD_DIR;\nMPI_HOME=\'/usr/lib64/mpich\'; export MPI_HOME;\n__MODULES_LMCONFLICT=\'mpi/mpich-aarch64&mpi\'; export __MODULES_LMCONFLICT;\n__MODULES_SHARE_MANPATH=\':2\'; export __MODULES_SHARE_MANPATH;\nMPI_SYSCONFIG=\'/etc/mpich-aarch64\'; export MPI_SYSCONFIG;\nMPI_SUFFIX=\'_mpich\'; export MPI_SUFFIX;\n__MODULES_SHARE_PKG_CONFIG_PATH=\':1\'; export __MODULES_SHARE_PKG_CONFIG_PATH;\nMPI_PYTHON2_SITEARCH=\'%{python2_sitearch}/mpich\'; export MPI_PYTHON2_SITEARCH;\nMPI_LIB=\'/usr/lib64/mpich/lib\'; export MPI_LIB;\nPATH=\'/usr/lib64/mpich/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin\'; export PATH;\nMPI_BIN=\'/usr/lib64/mpich/bin\'; export MPI_BIN;\ntest 0;' ++ LD_LIBRARY_PATH=/usr/lib64/mpich/lib ++ export LD_LIBRARY_PATH ++ MPI_COMPILER=mpich-aarch64 ++ export MPI_COMPILER ++ MANPATH=/usr/share/man/mpich-aarch64:/usr/share/man: ++ export MANPATH ++ MPI_INCLUDE=/usr/include/mpich-aarch64 ++ export MPI_INCLUDE ++ MPI_MAN=/usr/share/man/mpich-aarch64 ++ export MPI_MAN ++ MPI_PYTHON_SITEARCH='%{python2_sitearch}/mpich' ++ export MPI_PYTHON_SITEARCH ++ _LMFILES_=/usr/share/modulefiles/mpi/mpich-aarch64 ++ export _LMFILES_ ++ LOADEDMODULES=mpi/mpich-aarch64 ++ export LOADEDMODULES ++ CMAKE_PREFIX_PATH=/usr/lib64/mpich ++ export CMAKE_PREFIX_PATH ++ PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.15/site-packages/mpich ++ export MPI_PYTHON3_SITEARCH ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich ++ export MPI_FORTRAN_MOD_DIR ++ MPI_HOME=/usr/lib64/mpich ++ export MPI_HOME ++ __MODULES_LMCONFLICT='mpi/mpich-aarch64&mpi' ++ export __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:2 ++ export __MODULES_SHARE_MANPATH ++ MPI_SYSCONFIG=/etc/mpich-aarch64 ++ export MPI_SYSCONFIG ++ MPI_SUFFIX=_mpich ++ export MPI_SUFFIX ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ MPI_PYTHON2_SITEARCH='%{python2_sitearch}/mpich' ++ export MPI_PYTHON2_SITEARCH ++ MPI_LIB=/usr/lib64/mpich/lib ++ export MPI_LIB ++ PATH=/usr/lib64/mpich/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin ++ export PATH ++ MPI_BIN=/usr/lib64/mpich/bin ++ export MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + mkdir -p mpich_d + pushd mpich_d ~/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d ~/build/BUILD/gromacs-2026.3-build/gromacs-2026.3 + test -z mpich + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX ++ test -n mpich ++ echo -DGMX_MPI:BOOL=ON -DGMX_THREAD_MPI:BOOL=OFF -DGMX_DEFAULT_SUFFIX:BOOL=OFF -DBUILD_SHARED_LIBS:BOOL=OFF -DGMX_USE_HEFFTE=OFF -DGMX_BINARY_SUFFIX=_mpich_d -DGMX_LIBS_SUFFIX=_mpich_d -DCMAKE_INSTALL_BINDIR=/usr/lib64/mpich/bin -DCMAKE_INSTALL_LIBDIR=/usr/lib64/mpich/lib ++ test -z mpich ++ test -n _d ++ echo -DGMX_DOUBLE:BOOL=ON + /usr/bin/cmake -S .. -B redhat-linux-build -G Ninja -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DCMAKE_INSTALL_FULL_SBINDIR:PATH=/usr/bin -DCMAKE_INSTALL_SBINDIR:PATH=bin -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -DBUILD_TESTING:BOOL=ON -DCMAKE_SKIP_INSTALL_RPATH=ON -DGMX_BLAS_USER=flexiblas -DGMX_BUILD_UNITTESTS:BOOL=ON -DGMX_USE_LMFIT=EXTERNAL -DGMX_EXTERNAL_TNG:BOOL=ON -DGMX_EXTERNAL_TINYXML2:BOOL=OFF -DGMX_USE_MUPARSER=EXTERNAL -DGMX_LAPACK_USER=flexiblas -DGMX_USE_RDTSCP=OFF -DGMX_INSTALL_LEGACY_API=ON -DGMX_VERSION_STRING_OF_FORK=Fedora46 -DGMX_SIMD=ARM_NEON_ASIMD -DGMX_MPI:BOOL=ON -DGMX_THREAD_MPI:BOOL=OFF -DGMX_DEFAULT_SUFFIX:BOOL=OFF -DBUILD_SHARED_LIBS:BOOL=OFF -DGMX_USE_HEFFTE=OFF -DGMX_BINARY_SUFFIX=_mpich_d -DGMX_LIBS_SUFFIX=_mpich_d -DCMAKE_INSTALL_BINDIR=/usr/lib64/mpich/bin -DCMAKE_INSTALL_LIBDIR=/usr/lib64/mpich/lib -DGMX_DOUBLE:BOOL=ON -- The C compiler identification is GNU 16.2.1 -- The CXX compiler identification is GNU 16.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Could NOT find Python3 (missing: Python3_INCLUDE_DIRS Python3_LIBRARIES Development Development.Module Development.Embed) (found suitable version "3.15.0", minimum required is "3.9") -- Found OpenMP_CXX: -fopenmp (found version "5.2") -- Found OpenMP: TRUE (found version "5.2") found components: CXX -- Performing Test CFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS -- Performing Test CFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS - Success -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS -- Performing Test CXXFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Looking for include file unistd.h -- Looking for include file unistd.h - found -- Looking for include file pwd.h -- Looking for include file pwd.h - found -- Looking for include file dirent.h -- Looking for include file dirent.h - found -- Looking for include file time.h -- Looking for include file time.h - found -- Looking for include file sys/time.h -- Looking for include file sys/time.h - found -- Looking for include file io.h -- Looking for include file io.h - not found -- Looking for include file sched.h -- Looking for include file sched.h - found -- Looking for include file xmmintrin.h -- Looking for include file xmmintrin.h - not found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for sysconf -- Looking for sysconf - found -- Looking for nice -- Looking for nice - found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sigaction -- Looking for sigaction - found -- Performing Test HAVE_BUILTIN_CLZ -- Performing Test HAVE_BUILTIN_CLZ - Success -- Performing Test HAVE_BUILTIN_CLZLL -- Performing Test HAVE_BUILTIN_CLZLL - Success -- Looking for clock_gettime in rt -- Looking for clock_gettime in rt - found -- Looking for feenableexcept in m -- Looking for feenableexcept in m - found -- Looking for fedisableexcept in m -- Looking for fedisableexcept in m - found -- Checking for sched.h GNU affinity API -- Performing Test sched_affinity_compile -- Performing Test sched_affinity_compile - Success -- Looking for include file mm_malloc.h -- Looking for include file mm_malloc.h - not found -- Looking for include file malloc.h -- Looking for include file malloc.h - found -- Checking for _mm_malloc() -- Checking for _mm_malloc() - not supported -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - not found -- Found MPI_CXX: /usr/lib64/mpich/lib/libmpicxx.so (found version "5.0") -- Found MPI: TRUE (found version "5.0") found components: CXX -- Performing Test HAS_WARNING_NO_OLD_STYLE_CAST -- Performing Test HAS_WARNING_NO_OLD_STYLE_CAST - Success -- Performing Test HAS_WARNING_NO_CAST_QUAL -- Performing Test HAS_WARNING_NO_CAST_QUAL - Success -- Performing Test HAS_WARNING_NO_SUGGEST_OVERRIDE -- Performing Test HAS_WARNING_NO_SUGGEST_OVERRIDE - Success -- Performing Test HAS_WARNING_NO_SUGGEST_DESTRUCTOR_OVERRIDE -- Performing Test HAS_WARNING_NO_SUGGEST_DESTRUCTOR_OVERRIDE - Success -- Performing Test HAS_WARNING_NO_ZERO_AS_NULL_POINTER_CONSTANT -- Performing Test HAS_WARNING_NO_ZERO_AS_NULL_POINTER_CONSTANT - Success -- Using manually set binary suffix: "_mpich_d" -- Using manually set library suffix: "_mpich_d" -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Looking for C++ include pthread.h -- Looking for C++ include pthread.h - found -- Performing Test TEST_ATOMICS -- Performing Test TEST_ATOMICS - Success -- Atomic operations found -- Performing Test PTHREAD_SETAFFINITY -- Performing Test PTHREAD_SETAFFINITY - Success -- Performing Test C_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS -- Performing Test C_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS - Success -- Performing Test CXX_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS -- Performing Test CXX_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS - Success -- Enabling ARM (AArch64) NEON Advanced SIMD instructions using CXX flags: -- Performing Test _callconv___vectorcall -- Performing Test _callconv___vectorcall - Failed -- Performing Test _callconv___regcall -- Performing Test _callconv___regcall - Failed -- Performing Test _callconv_ -- Performing Test _callconv_ - Success -- Torch not found. Neural network potential support will be disabled. -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - not supported -- Detected build CPU vendor - ARM -- Detected build CPU brand - 0xd40 -- Detected build CPU family - 8 -- Detected build CPU model - 1 -- Detected build CPU stepping - 1 -- Detected build CPU features - neon neon_asimd sve -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present -- Checking for fseeko/ftello -- Checking for fseeko/ftello - present -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for pipe support -- Checking for system XDR support -- Checking for system XDR support - not present -- Checking for module 'fftw3' -- Found fftw3, version 3.3.10 -- Looking for fftw_plan_many_dft in /usr/lib64/libfftw3.so -- Looking for fftw_plan_many_dft in /usr/lib64/libfftw3.so - found -- Looking for fftw_plan_many_dft_r2c in /usr/lib64/libfftw3.so -- Looking for fftw_plan_many_dft_r2c in /usr/lib64/libfftw3.so - found -- Looking for fftw_plan_many_dft_c2r in /usr/lib64/libfftw3.so -- Looking for fftw_plan_many_dft_c2r in /usr/lib64/libfftw3.so - found -- Looking for fftw_have_simd_sse in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_sse in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_sse in /usr/lib64/libfftw3.so -- Looking for fftw_have_sse in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_sse2 in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_sse2 in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_sse2 in /usr/lib64/libfftw3.so -- Looking for fftw_have_sse2 in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_avx in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_avx in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_avx2 in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_avx2 in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_avx2_128 in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_avx2_128 in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_avx512 in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_avx512 in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_avx_128_fma in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_avx_128_fma in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_avx_512 in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_avx_512 in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_kcvi in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_kcvi in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_altivec in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_altivec in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_neon in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_neon in /usr/lib64/libfftw3.so - found -- Using external FFT library - FFTW3 -- Checking that user BLAS library flexiblas works -- Looking for dgemm_ -- Looking for dgemm_ - found -- Checking that user LAPACK library flexiblas works -- Looking for cheev_ -- Looking for cheev_ - found -- No image conversion possible without ImageMagick -- Performing Test HAVE_NO_DEPRECATED_COPY -- Performing Test HAVE_NO_DEPRECATED_COPY - Success -- Looking for open_memstream -- Looking for open_memstream - found -- Performing Test HAS_WARNING_EVERYTHING -- Performing Test HAS_WARNING_EVERYTHING - Failed -- Looking for dlopen -- Looking for dlopen - found -- Performing Test HAS_NO_STRINGOP_TRUNCATION -- Performing Test HAS_NO_STRINGOP_TRUNCATION - Success -- Could NOT find HDF5 (missing: HDF5_LIBRARIES HDF5_INCLUDE_DIRS C) (Required is at least version "1.10.7") -- Performing Test HAS_WARNING_NO_CAST_FUNCTION_TYPE_STRICT -- Performing Test HAS_WARNING_NO_CAST_FUNCTION_TYPE_STRICT - Success -- Performing Test HAS_NO_UNUSED -- Performing Test HAS_NO_UNUSED - Success -- Performing Test HAS_NO_UNUSED_PARAMETER -- Performing Test HAS_NO_UNUSED_PARAMETER - Success -- Performing Test HAS_NO_MISSING_DECLARATIONS -- Performing Test HAS_NO_MISSING_DECLARATIONS - Success -- Performing Test HAS_NO_NULL_CONVERSIONS -- Performing Test HAS_NO_NULL_CONVERSIONS - Success -- Performing Test LMFIT_LINKS_OK -- Performing Test LMFIT_LINKS_OK - Success -- Found Lmfit: /usr/include (found suitable version "11.0.0", minimum required is "7.0") -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success -- Performing Test COMPILER_HAS_DEPRECATED_ATTR -- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success -- Could NOT find Sphinx (missing: SPHINX_EXECUTABLE pygments) (Required is at least version "4.0.0") -- Could NOT find LATEX (missing: LATEX_COMPILER) -- Configuring done (20.0s) -- Generating done (0.5s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_Fortran_FLAGS_RELEASE CMAKE_INSTALL_DO_STRIP CMAKE_VERBOSE_MAKEFILE INCLUDE_INSTALL_DIR LIB_INSTALL_DIR LIB_SUFFIX SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build + /usr/bin/cmake --build redhat-linux-build -j32 --verbose Change Dir: '/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build' Run Build Command(s): /usr/bin/ninja-build -v -j 32 [1/944] cd /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3.15 -D PROJECT_VERSION=2026.3-Fedora46 -D PROJECT_SOURCE_DIR=/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3 -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Fedora46 -P /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/cmake/gmxGenerateVersionInfoWithoutGit.cmake [2/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o -MF src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o.d -o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/src/atomic.cpp [3/944] /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -MD -MT src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr_float.cpp.o -MF src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr_float.cpp.o.d -o src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr_float.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/rpc_xdr/xdr_float.cpp /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/rpc_xdr/xdr_float.cpp: In function ‘bool_t xdr_double(XDR*, double*)’: /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/rpc_xdr/xdr_float.cpp:223:17: warning: unused variable ‘ip’ [-Wunused-variable] 223 | int* ip; | ^~ /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/rpc_xdr/xdr_float.cpp:224:17: warning: unused variable ‘tmp’ [-Wunused-variable] 224 | int32_t tmp[2]; | ^~~ [4/944] /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -MD -MT src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr_array.cpp.o -MF src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr_array.cpp.o.d -o src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr_array.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/rpc_xdr/xdr_array.cpp [5/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -MF src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o.d -o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/src/tmpi_malloc.cpp [6/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o -MF src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o.d -o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/src/lock.cpp [7/944] /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -MD -MT src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr_stdio.cpp.o -MF src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr_stdio.cpp.o.d -o src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr_stdio.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/rpc_xdr/xdr_stdio.cpp [8/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o -MF src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o.d -o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/src/errhandler.cpp [9/944] /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -MD -MT src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr.cpp.o -MF src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr.cpp.o.d -o src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/rpc_xdr/xdr.cpp [10/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o -MF src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o.d -o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/src/pthreads.cpp [11/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_torchann.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_torchann.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_torchann.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarcomp_torchann.cpp [12/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_alchlambda.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_alchlambda.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_alchlambda.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarcomp_alchlambda.cpp [13/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_volmaps.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_volmaps.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_volmaps.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarcomp_volmaps.cpp [14/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparams.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparams.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparams.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarparams.cpp [15/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abmd.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abmd.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abmd.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarbias_abmd.cpp [16/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_angles.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_angles.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_angles.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarcomp_angles.cpp [17/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_replicas.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_replicas.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_replicas.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarproxy_replicas.cpp [18/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_combination.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_combination.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_combination.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarcomp_combination.cpp [19/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_system.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_system.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_system.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarproxy_system.cpp [20/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_volmaps.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_volmaps.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_volmaps.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarproxy_volmaps.cpp [21/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_rotations.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_rotations.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_rotations.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarcomp_rotations.cpp [22/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_alb.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_alb.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_alb.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarbias_alb.cpp [23/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_tcl.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_tcl.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_tcl.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarproxy_tcl.cpp [24/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar_neuralnetworkcompute.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar_neuralnetworkcompute.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar_neuralnetworkcompute.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvar_neuralnetworkcompute.cpp [25/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvars_memstream.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvars_memstream.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvars_memstream.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvars_memstream.cpp [26/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarbias_histogram.cpp [27/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvardeps.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvardeps.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvardeps.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvardeps.cpp [28/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_neuralnetwork.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_neuralnetwork.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_neuralnetwork.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarcomp_neuralnetwork.cpp [29/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_protein.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_protein.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_protein.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarcomp_protein.cpp [30/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid_integrate.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid_integrate.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid_integrate.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvargrid_integrate.cpp [31/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram_reweight_amd.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram_reweight_amd.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram_reweight_amd.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarbias_histogram_reweight_amd.cpp [32/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_coordnums.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_coordnums.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_coordnums.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarcomp_coordnums.cpp [33/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/nr_jacobi.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/nr_jacobi.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/nr_jacobi.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/nr_jacobi.cpp [34/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -DGMX_DESCRIBE_BLAS="External - user-supplied" -DGMX_DESCRIBE_LAPACK="External - user-supplied" -DGMX_FFT_MKL=0 -MD -MT src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/binary_information.cpp.o -MF src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/binary_information.cpp.o.d -o src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/binary_information.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/binary_information.cpp [35/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o -MF src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o.d -o src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/sparsematrix.cpp [36/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarproxy.cpp [37/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_io.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_io.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_io.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarproxy_io.cpp [38/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/fmm/CMakeFiles/fmm.dir/fmmforceprovider_stub.cpp.o -MF src/gromacs/fmm/CMakeFiles/fmm.dir/fmmforceprovider_stub.cpp.o.d -o src/gromacs/fmm/CMakeFiles/fmm.dir/fmmforceprovider_stub.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fmm/fmmforceprovider_stub.cpp [39/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/eigensolver.cpp.o -MF src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/eigensolver.cpp.o.d -o src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/eigensolver.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/eigensolver.cpp [40/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_bias.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_bias.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_bias.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarscript_commands_bias.cpp [41/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/matrix.cpp.o -MF src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/matrix.cpp.o.d -o src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/matrix.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/matrix.cpp [42/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarcomp.cpp [43/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/options/CMakeFiles/options.dir/behaviorcollection.cpp.o -MF src/gromacs/options/CMakeFiles/options.dir/behaviorcollection.cpp.o.d -o src/gromacs/options/CMakeFiles/options.dir/behaviorcollection.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/options/behaviorcollection.cpp [44/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/options/CMakeFiles/options.dir/abstractsection.cpp.o -MF src/gromacs/options/CMakeFiles/options.dir/abstractsection.cpp.o.d -o src/gromacs/options/CMakeFiles/options.dir/abstractsection.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/options/abstractsection.cpp [45/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/fmm/CMakeFiles/fmm.dir/fmm_mdpvalidator.cpp.o -MF src/gromacs/fmm/CMakeFiles/fmm.dir/fmm_mdpvalidator.cpp.o.d -o src/gromacs/fmm/CMakeFiles/fmm.dir/fmm_mdpvalidator.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fmm/fmm_mdpvalidator.cpp [46/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/fmm/CMakeFiles/fmm.dir/fmmforceproviderbuilder.cpp.o -MF src/gromacs/fmm/CMakeFiles/fmm.dir/fmmforceproviderbuilder.cpp.o.d -o src/gromacs/fmm/CMakeFiles/fmm.dir/fmmforceproviderbuilder.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fmm/fmmforceproviderbuilder.cpp [47/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_colvar.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_colvar.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_colvar.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarscript_commands_colvar.cpp [48/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/options/CMakeFiles/options.dir/optionsection.cpp.o -MF src/gromacs/options/CMakeFiles/options.dir/optionsection.cpp.o.d -o src/gromacs/options/CMakeFiles/options.dir/optionsection.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/options/optionsection.cpp [49/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarscript_commands.cpp [50/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/fmm/CMakeFiles/fmm.dir/fmm_mdmodule.cpp.o -MF src/gromacs/fmm/CMakeFiles/fmm.dir/fmm_mdmodule.cpp.o.d -o src/gromacs/fmm/CMakeFiles/fmm.dir/fmm_mdmodule.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fmm/fmm_mdmodule.cpp [51/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_apath.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_apath.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_apath.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarcomp_apath.cpp [52/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/options/CMakeFiles/options.dir/optionsvisitor.cpp.o -MF src/gromacs/options/CMakeFiles/options.dir/optionsvisitor.cpp.o.d -o src/gromacs/options/CMakeFiles/options.dir/optionsvisitor.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/options/optionsvisitor.cpp [53/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_restraint.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_restraint.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_restraint.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarbias_restraint.cpp [54/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/fmm/CMakeFiles/fmm.dir/fmm_mdpoptions.cpp.o -MF src/gromacs/fmm/CMakeFiles/fmm.dir/fmm_mdpoptions.cpp.o.d -o src/gromacs/fmm/CMakeFiles/fmm.dir/fmm_mdpoptions.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fmm/fmm_mdpoptions.cpp [55/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_distances.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_distances.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_distances.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarcomp_distances.cpp [56/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarbias.cpp [57/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/options/CMakeFiles/options.dir/optionsassigner.cpp.o -MF src/gromacs/options/CMakeFiles/options.dir/optionsassigner.cpp.o.d -o src/gromacs/options/CMakeFiles/options.dir/optionsassigner.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/options/optionsassigner.cpp [58/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvaratoms.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvaratoms.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvaratoms.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvaratoms.cpp [59/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/options/CMakeFiles/options.dir/filenameoptionmanager.cpp.o -MF src/gromacs/options/CMakeFiles/options.dir/filenameoptionmanager.cpp.o.d -o src/gromacs/options/CMakeFiles/options.dir/filenameoptionmanager.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/options/filenameoptionmanager.cpp [60/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/options/CMakeFiles/options.dir/timeunitmanager.cpp.o -MF src/gromacs/options/CMakeFiles/options.dir/timeunitmanager.cpp.o.d -o src/gromacs/options/CMakeFiles/options.dir/timeunitmanager.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/options/timeunitmanager.cpp [61/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvartypes.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvartypes.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvartypes.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvartypes.cpp [62/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarvalue.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarvalue.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarvalue.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarvalue.cpp [63/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/reportgpuusage.cpp.o -MF src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/reportgpuusage.cpp.o.d -o src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/reportgpuusage.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/reportgpuusage.cpp [64/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/findallgputasks.cpp.o -MF src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/findallgputasks.cpp.o.d -o src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/findallgputasks.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/findallgputasks.cpp [65/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/options/CMakeFiles/options.dir/options.cpp.o -MF src/gromacs/options/CMakeFiles/options.dir/options.cpp.o.d -o src/gromacs/options/CMakeFiles/options.dir/options.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/options/options.cpp [66/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/decidesimulationworkload.cpp.o -MF src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/decidesimulationworkload.cpp.o.d -o src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/decidesimulationworkload.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/decidesimulationworkload.cpp [67/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o -MF src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o.d -o src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/gmx_arpack.cpp [68/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/options/CMakeFiles/options.dir/abstractoption.cpp.o -MF src/gromacs/options/CMakeFiles/options.dir/abstractoption.cpp.o.d -o src/gromacs/options/CMakeFiles/options.dir/abstractoption.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/options/abstractoption.cpp [69/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvargrid.cpp [70/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/fmm/CMakeFiles/fmm.dir/fmmoptions.cpp.o -MF src/gromacs/fmm/CMakeFiles/fmm.dir/fmmoptions.cpp.o.d -o src/gromacs/fmm/CMakeFiles/fmm.dir/fmmoptions.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fmm/fmmoptions.cpp [71/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_gpath.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_gpath.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_gpath.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarcomp_gpath.cpp [72/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/usergpuids.cpp.o -MF src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/usergpuids.cpp.o.d -o src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/usergpuids.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/usergpuids.cpp [73/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/pullcoordexpressionparser.cpp.o -MF src/gromacs/pulling/CMakeFiles/pulling.dir/pullcoordexpressionparser.cpp.o.d -o src/gromacs/pulling/CMakeFiles/pulling.dir/pullcoordexpressionparser.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/pullcoordexpressionparser.cpp [74/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/compositesimulatorelement.cpp [75/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/transformationcoordinate.cpp.o -MF src/gromacs/pulling/CMakeFiles/pulling.dir/transformationcoordinate.cpp.o.d -o src/gromacs/pulling/CMakeFiles/pulling.dir/transformationcoordinate.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/transformationcoordinate.cpp [76/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparse.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparse.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparse.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarparse.cpp [77/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/resourcedivision.cpp.o -MF src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/resourcedivision.cpp.o.d -o src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/resourcedivision.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/resourcedivision.cpp [78/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/decidegpuusage.cpp.o -MF src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/decidegpuusage.cpp.o.d -o src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/decidegpuusage.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/decidegpuusage.cpp [79/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/options/CMakeFiles/options.dir/filenameoption.cpp.o -MF src/gromacs/options/CMakeFiles/options.dir/filenameoption.cpp.o.d -o src/gromacs/options/CMakeFiles/options.dir/filenameoption.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/options/filenameoption.cpp [80/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarscript.cpp [81/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/taskassignment.cpp.o -MF src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/taskassignment.cpp.o.d -o src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/taskassignment.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/taskassignment.cpp [82/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/options/CMakeFiles/options.dir/treesupport.cpp.o -MF src/gromacs/options/CMakeFiles/options.dir/treesupport.cpp.o.d -o src/gromacs/options/CMakeFiles/options.dir/treesupport.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/options/treesupport.cpp [83/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/domdechelper.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/domdechelper.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/domdechelper.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/domdechelper.cpp [84/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/output.cpp.o -MF src/gromacs/pulling/CMakeFiles/pulling.dir/output.cpp.o.d -o src/gromacs/pulling/CMakeFiles/pulling.dir/output.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/output.cpp [85/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/checkpointhelper.cpp [86/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abf.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abf.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abf.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarbias_abf.cpp [87/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/referencetemperaturemanager.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/referencetemperaturemanager.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/referencetemperaturemanager.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/referencetemperaturemanager.cpp [88/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/pullutil.cpp.o -MF src/gromacs/pulling/CMakeFiles/pulling.dir/pullutil.cpp.o.d -o src/gromacs/pulling/CMakeFiles/pulling.dir/pullutil.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/pullutil.cpp [89/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_meta.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_meta.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_meta.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarbias_meta.cpp [90/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_opes.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_opes.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_opes.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarbias_opes.cpp [91/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/pmeloadbalancehelper.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/pmeloadbalancehelper.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/pmeloadbalancehelper.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/pmeloadbalancehelper.cpp [92/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/topologyholder.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/topologyholder.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/topologyholder.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/topologyholder.cpp [93/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/andersentemperaturecoupling.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/andersentemperaturecoupling.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/andersentemperaturecoupling.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/andersentemperaturecoupling.cpp [94/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/signallers.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/signallers.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/signallers.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/signallers.cpp [95/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -Wno-null-conversion -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/selection/CMakeFiles/scanner.dir/scanner.cpp.o -MF src/gromacs/selection/CMakeFiles/scanner.dir/scanner.cpp.o.d -o src/gromacs/selection/CMakeFiles/scanner.dir/scanner.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/scanner.cpp [96/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/constraintelement.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/constraintelement.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/constraintelement.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/constraintelement.cpp [97/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/energyterm.cpp.o -MF src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/energyterm.cpp.o.d -o src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/energyterm.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/energyanalysis/energyterm.cpp [98/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/programs/CMakeFiles/gmx_objlib.dir/gmx.cpp.o -MF src/programs/CMakeFiles/gmx_objlib.dir/gmx.cpp.o.d -o src/programs/CMakeFiles/gmx_objlib.dir/gmx.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/programs/gmx.cpp [99/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/fileio/h5md/CMakeFiles/h5md.dir/h5md.cpp.o -MF src/gromacs/fileio/h5md/CMakeFiles/h5md.dir/h5md.cpp.o.d -o src/gromacs/fileio/h5md/CMakeFiles/h5md.dir/h5md.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/h5md/h5md.cpp [100/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/expandedensembleelement.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/expandedensembleelement.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/expandedensembleelement.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/expandedensembleelement.cpp [101/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/trajectoryelement.cpp [102/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/computeglobalselement.cpp [103/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/programs/CMakeFiles/gmx_objlib.dir/legacymodules.cpp.o -MF src/programs/CMakeFiles/gmx_objlib.dir/legacymodules.cpp.o.d -o src/programs/CMakeFiles/gmx_objlib.dir/legacymodules.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/programs/legacymodules.cpp [104/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarmodule.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarmodule.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarmodule.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarmodule.cpp [105/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/forceelement.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/forceelement.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/forceelement.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/forceelement.cpp [106/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/freeenergyperturbationdata.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/freeenergyperturbationdata.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/freeenergyperturbationdata.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/freeenergyperturbationdata.cpp [107/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/firstorderpressurecoupling.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/firstorderpressurecoupling.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/firstorderpressurecoupling.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/firstorderpressurecoupling.cpp [108/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/energydata.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/energydata.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/energydata.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/energydata.cpp [109/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -MF src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o.d -o src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/programs/mdrun/mdrun.cpp [110/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/pull.cpp.o -MF src/gromacs/pulling/CMakeFiles/pulling.dir/pull.cpp.o.d -o src/gromacs/pulling/CMakeFiles/pulling.dir/pull.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/pull.cpp [111/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -MF src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o.d -o src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/programs/mdrun/nonbonded_bench.cpp [112/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvar.cpp [113/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/pull_rotation.cpp.o -MF src/gromacs/pulling/CMakeFiles/pulling.dir/pull_rotation.cpp.o.d -o src/gromacs/pulling/CMakeFiles/pulling.dir/pull_rotation.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/pull_rotation.cpp [114/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/pullelement.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/pullelement.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/pullelement.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/pullelement.cpp [115/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/parrinellorahmanbarostat.cpp [116/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/mttk.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/mttk.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/mttk.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/mttk.cpp [117/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/nosehooverchains.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/nosehooverchains.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/nosehooverchains.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/nosehooverchains.cpp [118/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/modularsimulator.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/modularsimulator.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/modularsimulator.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/modularsimulator.cpp [119/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/velocityscalingtemperaturecoupling.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/velocityscalingtemperaturecoupling.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/velocityscalingtemperaturecoupling.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/velocityscalingtemperaturecoupling.cpp [120/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -Wno-null-conversion -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/selection/CMakeFiles/scanner.dir/parser.cpp.o -MF src/gromacs/selection/CMakeFiles/scanner.dir/parser.cpp.o.d -o src/gromacs/selection/CMakeFiles/scanner.dir/parser.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/parser.cpp [121/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/statepropagatordata.cpp [122/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/options/CMakeFiles/options.dir/basicoptions.cpp.o -MF src/gromacs/options/CMakeFiles/options.dir/basicoptions.cpp.o.d -o src/gromacs/options/CMakeFiles/options.dir/basicoptions.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/options/basicoptions.cpp [123/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/simulatoralgorithm.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/simulatoralgorithm.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/simulatoralgorithm.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/simulatoralgorithm.cpp [124/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/propagator.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/propagator.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/propagator.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/propagator.cpp [125/944] cd /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/cmake -D VERSION_VARIABLES=/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/VersionInfo.cmake -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/baseversion-gen.cpp.cmakein -D VERSION_OUT=utility/baseversion-gen.cpp -D GMX_SOURCE_DOI= -D GMX_RELEASE_HASH= -D GMX_SOURCE_HASH= -P /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/cmake/gmxConfigureVersionInfo.cmake && /usr/bin/cmake -E touch utility/baseversion-gen.cpp [126/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/errorcodes.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/errorcodes.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/errorcodes.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/errorcodes.cpp [127/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/alignedallocator.cpp [128/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/physicalnodecommunicator.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/physicalnodecommunicator.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/physicalnodecommunicator.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/physicalnodecommunicator.cpp [129/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/booltype.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/booltype.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/booltype.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/booltype.cpp [130/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/logger.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/logger.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/logger.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/logger.cpp [131/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/any.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/any.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/any.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/any.cpp [132/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/baseversion.cpp [133/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/compare.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/compare.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/compare.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/compare.cpp [134/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/int64_to_int.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/int64_to_int.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/int64_to_int.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/int64_to_int.cpp [135/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxassert.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxassert.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxassert.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/gmxassert.cpp [136/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/ikeyvaluetreeerror.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/ikeyvaluetreeerror.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/ikeyvaluetreeerror.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/ikeyvaluetreeerror.cpp [137/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/init.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/init.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/init.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/init.cpp [138/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/basenetwork.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/basenetwork.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/basenetwork.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/basenetwork.cpp [139/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/pleasecite.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/pleasecite.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/pleasecite.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/pleasecite.cpp [140/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/niceheader.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/niceheader.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/niceheader.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/niceheader.cpp [141/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/errorformat.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/errorformat.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/errorformat.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/errorformat.cpp [142/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/fileredirector.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/fileredirector.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/fileredirector.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/fileredirector.cpp [143/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/message_string_collector.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/message_string_collector.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/message_string_collector.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/message_string_collector.cpp [144/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxomp.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxomp.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxomp.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/gmxomp.cpp [145/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/coolstuff.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/coolstuff.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/coolstuff.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/coolstuff.cpp [146/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/cstringutil.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/cstringutil.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/cstringutil.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/cstringutil.cpp [147/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/sysinfo.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/sysinfo.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/sysinfo.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/sysinfo.cpp [148/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/programcontext.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/programcontext.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/programcontext.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/programcontext.cpp [149/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/fatalerror.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/fatalerror.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/fatalerror.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/fatalerror.cpp [150/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreemdpwriter.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreemdpwriter.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreemdpwriter.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/keyvaluetreemdpwriter.cpp [151/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/smalloc.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/smalloc.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/smalloc.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/smalloc.cpp [152/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/veccompare.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/veccompare.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/veccompare.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/veccompare.cpp [153/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/stringstream.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/stringstream.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/stringstream.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/stringstream.cpp [154/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/filestream.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/filestream.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/filestream.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/filestream.cpp [155/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/mpicomm.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/mpicomm.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/mpicomm.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/mpicomm.cpp [156/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/loggerbuilder.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/loggerbuilder.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/loggerbuilder.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/loggerbuilder.cpp [157/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/strconvert.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/strconvert.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/strconvert.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/strconvert.cpp [158/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/strdb.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/strdb.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/strdb.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/strdb.cpp [159/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/path.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/path.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/path.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/path.cpp [160/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/txtdump.cpp [161/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/textreader.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/textreader.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/textreader.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/textreader.cpp [162/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/vecdump.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/vecdump.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/vecdump.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/vecdump.cpp [163/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/futil.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/futil.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/futil.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/futil.cpp [164/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetree.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetree.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetree.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/keyvaluetree.cpp [165/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/directoryenumerator.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/directoryenumerator.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/directoryenumerator.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/directoryenumerator.cpp [166/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/textwriter.cpp [167/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/stringutil.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/stringutil.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/stringutil.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/stringutil.cpp [168/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/datafilefinder.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/datafilefinder.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/datafilefinder.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/datafilefinder.cpp [169/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/exceptions.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/exceptions.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/exceptions.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/exceptions.cpp [170/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreetransform.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreetransform.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreetransform.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/keyvaluetreetransform.cpp [171/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp [172/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp [173/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_F.cpp [174/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp [175/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp [176/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_F.cpp [177/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp [178/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp [179/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp [180/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp [181/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp [182/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp [183/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp [184/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp [185/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VF.cpp [186/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp [187/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp [188/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp [189/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp [190/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp [191/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VF.cpp [192/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp [193/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp [194/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp [195/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp [196/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp [197/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp [198/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp [199/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp [200/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp [201/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp [202/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_F.cpp [203/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp [204/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/mpiinfo.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/mpiinfo.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/mpiinfo.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/mpiinfo.cpp [205/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp [206/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp [207/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp [208/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp [209/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp [210/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp [211/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VgrpF.cpp [212/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp [213/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp [214/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp [215/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp [216/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp [217/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp [218/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp [219/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp [220/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp [221/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp [222/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp [223/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp [224/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp [225/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp [226/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp [227/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp [228/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp [229/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp [230/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp [231/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp [232/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp [233/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp [234/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp [235/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp [236/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp [237/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp [238/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp [239/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VF.cpp [240/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp [241/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp [242/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp [243/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VF.cpp [244/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp [245/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp [246/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp [247/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp [248/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp [249/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp [250/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp [251/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp [252/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp [253/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp [254/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp [255/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp [256/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VF.cpp [257/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp [258/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp [259/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp [260/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp [261/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp [262/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp [263/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp [264/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp [265/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp [266/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp [267/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_F.cpp [268/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp [269/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp [270/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp [271/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp [272/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_F.cpp [273/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VF.cpp [274/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp [275/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_F.cpp [276/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VF.cpp [277/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp [278/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp [279/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp [280/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp [281/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp [282/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp [283/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp [284/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_F.cpp [285/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VF.cpp [286/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp [287/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp [288/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_F.cpp [289/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp [290/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VF.cpp [291/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp [292/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_F.cpp [293/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VF.cpp [294/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VgrpF.cpp [295/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp [296/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp [297/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp [298/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp [299/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp [300/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp [301/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp [302/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp [303/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp [304/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp [305/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp [306/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp [307/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp [308/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp [309/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp [310/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp [311/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp [312/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp [313/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp [314/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp [315/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp [316/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp [317/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp [318/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp [319/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp [320/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_F.cpp [321/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp [322/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp [323/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp [324/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp [325/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_F.cpp [326/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VF.cpp [327/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp [328/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_F.cpp [329/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VF.cpp [330/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp [331/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VF.cpp [332/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp [333/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_F.cpp [334/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VF.cpp [335/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_F.cpp [336/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp [337/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_F.cpp [338/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VF.cpp [339/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp [340/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp [341/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp [342/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp [343/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_F.cpp [344/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VF.cpp [345/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_F.cpp [346/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp [347/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VF.cpp [348/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp [349/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_F.cpp [350/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VgrpF.cpp [351/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VF.cpp [352/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernel_common.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernel_common.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernel_common.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernel_common.cpp [353/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/commandline/cmdlinehelpcontext.cpp [354/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistsets.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistsets.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistsets.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/pairlistsets.cpp [355/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/exclusionchecker.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/exclusionchecker.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/exclusionchecker.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/exclusionchecker.cpp [356/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodule.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodule.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodule.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/commandline/cmdlinemodule.cpp [357/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_geometry.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_geometry.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_geometry.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/nbnxm_geometry.cpp [358/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodulesettings.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodulesettings.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodulesettings.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/commandline/cmdlinemodulesettings.cpp [359/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_gpu_ref.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_gpu_ref.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_gpu_ref.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_reference/kernel_gpu_ref.cpp [360/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_system.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_system.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_system.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/benchmark/bench_system.cpp [361/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/freeenergydispatch.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/freeenergydispatch.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/freeenergydispatch.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/freeenergydispatch.cpp [362/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistparams.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistparams.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistparams.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/pairlistparams.cpp [363/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineinit.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineinit.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineinit.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/commandline/cmdlineinit.cpp [364/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistwork.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistwork.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistwork.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/pairlistwork.cpp [365/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/nbnxm.cpp [366/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/gridset.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/gridset.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/gridset.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/gridset.cpp [367/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_prune.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_prune.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_prune.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_reference/kernel_ref_prune.cpp [368/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairsearch.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairsearch.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairsearch.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/pairsearch.cpp [369/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist_simd_kernel.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist_simd_kernel.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist_simd_kernel.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/pairlist_simd_kernel.cpp [370/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/simd_energy_accumulator.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/simd_energy_accumulator.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/simd_energy_accumulator.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/simd_energy_accumulator.cpp [371/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/simd_prune_kernel.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/simd_prune_kernel.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/simd_prune_kernel.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/simd_prune_kernel.cpp [372/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/prunekerneldispatch.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/prunekerneldispatch.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/prunekerneldispatch.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/prunekerneldispatch.cpp [373/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistset.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistset.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistset.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/pairlistset.cpp [374/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/commandline/cmdlineparser.cpp [375/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/viewit.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/commandline/viewit.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/commandline/viewit.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/commandline/viewit.cpp [376/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineoptionsmodule.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineoptionsmodule.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineoptionsmodule.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/commandline/cmdlineoptionsmodule.cpp [377/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kerneldispatch.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kerneldispatch.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kerneldispatch.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kerneldispatch.cpp [378/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/filenm.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/commandline/filenm.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/commandline/filenm.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/commandline/filenm.cpp [379/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpwriter.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpwriter.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpwriter.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/commandline/cmdlinehelpwriter.cpp [380/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/atomdistribution.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/atomdistribution.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/atomdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/atomdistribution.cpp [381/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_setup.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_setup.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_setup.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/benchmark/bench_setup.cpp [382/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlb.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlb.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlb.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/dlb.cpp [383/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/dlbtiming.cpp [384/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/commandline/cmdlineprogramcontext.cpp [385/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/shellcompletions.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/commandline/shellcompletions.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/commandline/shellcompletions.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/commandline/shellcompletions.cpp [386/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist_tuning.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist_tuning.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist_tuning.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/pairlist_tuning.cpp [387/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/domdec_network.cpp [388/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/box.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/box.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/box.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/box.cpp [389/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/grid.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/grid.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/grid.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/grid.cpp [390/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/ga2la.cpp [391/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomset.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomset.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomset.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/localatomset.cpp [392/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/computemultibodycutoffs.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/computemultibodycutoffs.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/computemultibodycutoffs.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/computemultibodycutoffs.cpp [393/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/collect.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/collect.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/collect.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/collect.cpp [394/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodulemanager.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodulemanager.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodulemanager.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/commandline/cmdlinemodulemanager.cpp [395/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_setup.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_setup.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_setup.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/nbnxm_setup.cpp [396/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/commandline/cmdlinehelpmodule.cpp [397/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetdata.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetdata.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetdata.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/localatomsetdata.cpp [398/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetmanager.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetmanager.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetmanager.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/localatomsetmanager.cpp [399/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/domdec_vsite.cpp [400/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_zones.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_zones.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_zones.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/domdec_zones.cpp [401/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/pargs.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/commandline/pargs.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/commandline/pargs.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/commandline/pargs.cpp [402/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/cellsizes.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/cellsizes.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/cellsizes.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/cellsizes.cpp [403/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/gpuhaloexchange_impl.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/gpuhaloexchange_impl.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/gpuhaloexchange_impl.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/gpuhaloexchange_impl.cpp [404/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/functions.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/math/functions.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/math/functions.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/functions.cpp [405/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/dump.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/dump.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/dump.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/dump.cpp [406/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/nsgrid.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/nsgrid.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/nsgrid.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/nsgrid.cpp [407/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/3dtransforms.cpp [408/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/coordinatetransformation.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/math/coordinatetransformation.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/math/coordinatetransformation.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/coordinatetransformation.cpp [409/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/atomdata.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/atomdata.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/atomdata.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/atomdata.cpp [410/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/domainpaircomm.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/domainpaircomm.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/domainpaircomm.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/domainpaircomm.cpp [411/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/domdec_specatomcomm.cpp [412/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/utilities.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/math/utilities.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/math/utilities.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/utilities.cpp [413/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/mdsetup.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/mdsetup.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/mdsetup.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/mdsetup.cpp [414/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/densityfittingforce.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/math/densityfittingforce.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/math/densityfittingforce.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/densityfittingforce.cpp [415/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/optimization.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/math/optimization.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/math/optimization.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/optimization.cpp [416/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/distribute.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/distribute.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/distribute.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/distribute.cpp [417/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/do_fit.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/math/do_fit.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/math/do_fit.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/do_fit.cpp [418/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/utility.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/utility.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/utility.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/utility.cpp [419/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/commrec.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/commrec.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/commrec.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdtypes/commrec.cpp [420/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/domdec_constraints.cpp [421/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/invertmatrix.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/math/invertmatrix.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/math/invertmatrix.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/invertmatrix.cpp [422/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/makebondedlinks.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/makebondedlinks.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/makebondedlinks.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/makebondedlinks.cpp [423/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/haloexchangesetup.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/haloexchangesetup.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/haloexchangesetup.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/haloexchangesetup.cpp [424/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/haloexchange.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/haloexchange.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/haloexchange.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/haloexchange.cpp [425/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/densityfit.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/math/densityfit.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/math/densityfit.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/densityfit.cpp [426/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/domdec_setup.cpp [427/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/exponentialmovingaverage.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/math/exponentialmovingaverage.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/math/exponentialmovingaverage.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/exponentialmovingaverage.cpp [428/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/localtopologychecker.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/localtopologychecker.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/localtopologychecker.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/localtopologychecker.cpp [429/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/gausstransform.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/math/gausstransform.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/math/gausstransform.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/gausstransform.cpp [430/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/md_enums.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/md_enums.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/md_enums.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdtypes/md_enums.cpp [431/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/neldermead.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/math/neldermead.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/math/neldermead.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/neldermead.cpp [432/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/nrjac.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/math/nrjac.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/math/nrjac.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/nrjac.cpp [433/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/iforceprovider.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/iforceprovider.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/iforceprovider.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdtypes/iforceprovider.cpp [434/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/boxutilities.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/boxutilities.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/boxutilities.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/boxutilities.cpp [435/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/forcebuffers.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/forcebuffers.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/forcebuffers.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdtypes/forcebuffers.cpp [436/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/group.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/group.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/group.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdtypes/group.cpp [437/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/observableshistory.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/observableshistory.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/observableshistory.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdtypes/observableshistory.cpp [438/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbcenums.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbcenums.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbcenums.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/pbcenums.cpp [439/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/rstparser.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/rstparser.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/rstparser.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/onlinehelp/rstparser.cpp [440/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/reversetopology.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/reversetopology.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/reversetopology.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/reversetopology.cpp [441/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/onlinehelp/helpmanager.cpp [442/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/observablesreducer.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/observablesreducer.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/observablesreducer.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdtypes/observablesreducer.cpp [443/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/redistribute.cpp [444/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/random/tabulatednormaldistribution.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/random/tabulatednormaldistribution.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/random/tabulatednormaldistribution.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/random/tabulatednormaldistribution.cpp [445/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/localtopology.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/localtopology.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/localtopology.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/localtopology.cpp [446/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/com.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/com.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/com.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/com.cpp [447/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/checkpointdata.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/checkpointdata.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/checkpointdata.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdtypes/checkpointdata.cpp [448/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc_simd.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc_simd.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc_simd.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/pbc_simd.cpp [449/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/timing/cyclecounter.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/timing/cyclecounter.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/timing/cyclecounter.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/cyclecounter.cpp [450/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/timing/external_tracing.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/timing/external_tracing.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/timing/external_tracing.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/external_tracing.cpp [451/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/multipletimestepping.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/multipletimestepping.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/multipletimestepping.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdtypes/multipletimestepping.cpp [452/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/timing/walltime_accounting.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/timing/walltime_accounting.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/timing/walltime_accounting.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/walltime_accounting.cpp [453/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helptopic.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helptopic.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helptopic.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/onlinehelp/helptopic.cpp [454/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/random/seed.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/random/seed.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/random/seed.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/random/seed.cpp [455/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpformat.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpformat.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpformat.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/onlinehelp/helpformat.cpp [456/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/interaction_const.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/interaction_const.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/interaction_const.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdtypes/interaction_const.cpp [457/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/rmpbc.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/rmpbc.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/rmpbc.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/rmpbc.cpp [458/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbcmethods.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbcmethods.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbcmethods.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/pbcmethods.cpp [459/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/df_history.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/df_history.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/df_history.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdtypes/df_history.cpp [460/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/restraint/manager.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/restraint/manager.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/restraint/manager.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/restraint/manager.cpp [461/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/serialization/inmemoryserializer.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/serialization/inmemoryserializer.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/serialization/inmemoryserializer.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/inmemoryserializer.cpp [462/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/energyhistory.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/energyhistory.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/energyhistory.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdtypes/energyhistory.cpp [463/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tables/splineutil.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/tables/splineutil.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/tables/splineutil.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/tables/splineutil.cpp [464/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/block.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/topology/block.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/topology/block.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/block.cpp [465/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/ifunc.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/topology/ifunc.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/topology/ifunc.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/ifunc.cpp [466/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/forcefieldparameters.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/topology/forcefieldparameters.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/topology/forcefieldparameters.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/forcefieldparameters.cpp [467/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/atomsbuilder.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/topology/atomsbuilder.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/topology/atomsbuilder.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/atomsbuilder.cpp [468/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/restraint/restraintmdmodule.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/restraint/restraintmdmodule.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/restraint/restraintmdmodule.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/restraint/restraintmdmodule.cpp [469/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/awh_history.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/awh_history.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/awh_history.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdtypes/awh_history.cpp [470/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpwritercontext.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpwritercontext.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpwritercontext.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/onlinehelp/helpwritercontext.cpp [471/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/invblock.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/topology/invblock.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/topology/invblock.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/invblock.cpp [472/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/threaded_force_buffer.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/threaded_force_buffer.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/threaded_force_buffer.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdtypes/threaded_force_buffer.cpp [473/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/pbc.cpp [474/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/atoms.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/topology/atoms.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/topology/atoms.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/atoms.cpp [475/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/exclusionblocks.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/topology/exclusionblocks.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/topology/exclusionblocks.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/exclusionblocks.cpp [476/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/atomprop.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/topology/atomprop.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/topology/atomprop.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/atomprop.cpp [477/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/pairlist.cpp [478/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tables/cubicsplinetable.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/tables/cubicsplinetable.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/tables/cubicsplinetable.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/tables/cubicsplinetable.cpp [479/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/binsearch.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/binsearch.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/binsearch.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/binsearch.cpp [480/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tables/quadraticsplinetable.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/tables/quadraticsplinetable.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/tables/quadraticsplinetable.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/tables/quadraticsplinetable.cpp [481/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/mshift.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/mshift.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/mshift.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/mshift.cpp [482/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/inputrec.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/inputrec.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/inputrec.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdtypes/inputrec.cpp [483/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/angle_correction.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/angle_correction.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/angle_correction.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/angle_correction.cpp [484/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/idef.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/topology/idef.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/topology/idef.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/idef.cpp [485/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/timing/wallcycle.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/timing/wallcycle.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/timing/wallcycle.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/wallcycle.cpp [486/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/state.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/state.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/state.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdtypes/state.cpp [487/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/residuetypes.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/topology/residuetypes.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/topology/residuetypes.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/residuetypes.cpp [488/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/serialization/keyvaluetreeserializer.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/serialization/keyvaluetreeserializer.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/serialization/keyvaluetreeserializer.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/keyvaluetreeserializer.cpp [489/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/mtop_atomloops.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/topology/mtop_atomloops.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/topology/mtop_atomloops.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/mtop_atomloops.cpp [490/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/dens_filter.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/dens_filter.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/dens_filter.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/dens_filter.cpp [491/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectory/energyframe.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectory/energyframe.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectory/energyframe.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectory/energyframe.cpp [492/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/imd/imdsocket.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/imd/imdsocket.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/imd/imdsocket.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/imd/imdsocket.cpp [493/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectory/trajectoryframe.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectory/trajectoryframe.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectory/trajectoryframe.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectory/trajectoryframe.cpp [494/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tables/forcetable.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/tables/forcetable.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/tables/forcetable.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/tables/forcetable.cpp [495/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mimic/utilities.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mimic/utilities.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mimic/utilities.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mimic/utilities.cpp [496/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/topsort.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/topology/topsort.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/topology/topsort.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/topsort.cpp [497/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/eigio.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/eigio.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/eigio.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/eigio.cpp [498/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mimic/communicator_stub.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mimic/communicator_stub.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mimic/communicator_stub.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mimic/communicator_stub.cpp [499/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/cmat.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/cmat.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/cmat.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/cmat.cpp [500/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/symtab.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/topology/symtab.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/topology/symtab.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/symtab.cpp [501/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/fitahx.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/fitahx.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/fitahx.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/fitahx.cpp [502/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/topology.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/topology/topology.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/topology/topology.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/topology.cpp [503/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/embedded_system_preprocessing.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/topology/embedded_system_preprocessing.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/topology/embedded_system_preprocessing.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/embedded_system_preprocessing.cpp [504/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/dlist.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/dlist.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/dlist.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/dlist.cpp [505/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_angle.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_angle.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_angle.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_angle.cpp [506/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/anadih.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/anadih.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/anadih.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/anadih.cpp [507/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/imd/imd.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/imd/imd.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/imd/imd.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/imd/imd.cpp [508/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/mtop_util.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/topology/mtop_util.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/topology/mtop_util.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/mtop_util.cpp [509/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_bundle.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_bundle.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_bundle.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_bundle.cpp [510/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/domdec.cpp [511/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/cluster_methods.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/cluster_methods.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/cluster_methods.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/cluster_methods.cpp [512/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/partition.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/partition.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/partition.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/partition.cpp [513/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/index.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/topology/index.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/topology/index.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/index.cpp [514/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_clustsize.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_clustsize.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_clustsize.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_clustsize.cpp [515/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dielectric.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dielectric.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dielectric.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_dielectric.cpp [516/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_confrms.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_confrms.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_confrms.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_confrms.cpp [517/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_densmap.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_densmap.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_densmap.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_densmap.cpp [518/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_current.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_current.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_current.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_current.cpp [519/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_awh.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_awh.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_awh.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_awh.cpp [520/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_density.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_density.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_density.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_density.cpp [521/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_analyze.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_analyze.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_analyze.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_analyze.cpp [522/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_1x1.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_1x1.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_1x1.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_reference/kernel_ref_1x1.cpp [523/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_covar.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_covar.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_covar.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_covar.cpp [524/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_densorder.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_densorder.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_densorder.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_densorder.cpp [525/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dos.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dos.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dos.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_dos.cpp [526/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dyecoupl.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dyecoupl.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dyecoupl.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_dyecoupl.cpp [527/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_enemat.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_enemat.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_enemat.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_enemat.cpp [528/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_anaeig.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_anaeig.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_anaeig.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_anaeig.cpp [529/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_h2order.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_h2order.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_h2order.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_h2order.cpp [530/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_helix.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_helix.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_helix.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_helix.cpp [531/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_filter.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_filter.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_filter.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_filter.cpp [532/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_lie.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_lie.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_lie.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_lie.cpp [533/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_cluster.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_cluster.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_cluster.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_cluster.cpp [534/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_gyrate.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_gyrate.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_gyrate.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_gyrate.cpp [535/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_bar.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_bar.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_bar.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_bar.cpp [536/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dipoles.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dipoles.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dipoles.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_dipoles.cpp [537/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_helixorient.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_helixorient.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_helixorient.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_helixorient.cpp [538/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_make_edi.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_make_edi.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_make_edi.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_make_edi.cpp [539/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_mdmat.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_mdmat.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_mdmat.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_mdmat.cpp [540/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/essentialdynamics/edsam.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/essentialdynamics/edsam.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/essentialdynamics/edsam.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/essentialdynamics/edsam.cpp [541/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmens.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmens.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmens.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_nmens.cpp [542/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rama.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rama.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rama.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_rama.cpp [543/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_hydorder.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_hydorder.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_hydorder.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_hydorder.cpp [544/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmtraj.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmtraj.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmtraj.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_nmtraj.cpp [545/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_saxs.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_saxs.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_saxs.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_saxs.cpp [546/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_principal.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_principal.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_principal.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_principal.cpp [547/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmeig.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmeig.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmeig.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_nmeig.cpp [548/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/swap/swapcoords.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/swap/swapcoords.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/swap/swapcoords.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/swap/swapcoords.cpp [549/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rotacf.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rotacf.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rotacf.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_rotacf.cpp [550/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_mindist.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_mindist.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_mindist.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_mindist.cpp [551/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_polystat.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_polystat.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_polystat.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_polystat.cpp [552/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sigeps.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sigeps.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sigeps.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_sigeps.cpp [553/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_disre.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_disre.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_disre.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_disre.cpp [554/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_saltbr.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_saltbr.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_saltbr.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_saltbr.cpp [555/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_potential.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_potential.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_potential.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_potential.cpp [556/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rotmat.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rotmat.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rotmat.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_rotmat.cpp [557/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_chi.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_chi.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_chi.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_chi.cpp [558/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sans.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sans.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sans.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_sans.cpp [559/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rmsf.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rmsf.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rmsf.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_rmsf.cpp [560/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_order.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_order.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_order.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_order.cpp [561/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rmsdist.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rmsdist.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rmsdist.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_rmsdist.cpp [562/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_energy.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_energy.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_energy.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_energy.cpp [563/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_spatial.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_spatial.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_spatial.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_spatial.cpp [564/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_wheel.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_wheel.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_wheel.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_wheel.cpp [565/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_spol.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_spol.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_spol.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_spol.cpp [566/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sorient.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sorient.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sorient.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_sorient.cpp [567/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmr.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmr.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmr.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_nmr.cpp [568/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/powerspect.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/powerspect.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/powerspect.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/powerspect.cpp [569/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/thermochemistry.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/thermochemistry.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/thermochemistry.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/thermochemistry.cpp [570/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/princ.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/princ.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/princ.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/princ.cpp [571/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_tcaf.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_tcaf.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_tcaf.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_tcaf.cpp [572/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_velacc.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_velacc.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_velacc.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_velacc.cpp [573/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_trjorder.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_trjorder.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_trjorder.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_trjorder.cpp [574/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/calch.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/calch.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/calch.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/calch.cpp [575/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/nrama.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/nrama.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/nrama.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/nrama.cpp [576/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/pp2shift.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/pp2shift.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/pp2shift.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/pp2shift.cpp [577/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/compute_io.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/compute_io.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/compute_io.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/compute_io.cpp [578/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/hxprops.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/hxprops.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/hxprops.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/hxprops.cpp [579/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rms.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rms.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rms.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_rms.cpp [580/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_vanhove.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_vanhove.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_vanhove.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_vanhove.cpp [581/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/add_par.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/add_par.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/add_par.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/add_par.cpp [582/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/sfactor.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/sfactor.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/sfactor.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/sfactor.cpp [583/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/nsfactor.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/nsfactor.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/nsfactor.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/nsfactor.cpp [584/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sham.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sham.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sham.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_sham.cpp [585/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_bond_atomtype.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_bond_atomtype.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_bond_atomtype.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/gpp_bond_atomtype.cpp [586/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/fflibutil.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/fflibutil.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/fflibutil.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/fflibutil.cpp [587/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_traj.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_traj.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_traj.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_traj.cpp [588/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/makeexclusiondistances.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/makeexclusiondistances.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/makeexclusiondistances.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/makeexclusiondistances.cpp [589/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/convparm.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/convparm.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/convparm.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/convparm.cpp [590/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_maxwell_velocities.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_maxwell_velocities.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_maxwell_velocities.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/gen_maxwell_velocities.cpp [591/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genrestr.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genrestr.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genrestr.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/genrestr.cpp [592/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/hizzie.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/hizzie.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/hizzie.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/hizzie.cpp [593/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genconf.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genconf.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genconf.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/genconf.cpp [594/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_nextnb.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_nextnb.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_nextnb.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/gpp_nextnb.cpp [595/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pgutil.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pgutil.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pgutil.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/pgutil.cpp [596/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/massrepartitioning.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/massrepartitioning.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/massrepartitioning.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/massrepartitioning.cpp [597/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/editconf.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/editconf.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/editconf.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/editconf.cpp [598/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/nm2type.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/nm2type.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/nm2type.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/nm2type.cpp [599/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/h_db.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/h_db.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/h_db.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/h_db.cpp [600/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/hackblock.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/hackblock.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/hackblock.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/hackblock.cpp [601/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genhydro.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genhydro.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genhydro.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/genhydro.cpp [602/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genion.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genion.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genion.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/genion.cpp [603/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_atomtype.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_atomtype.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_atomtype.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/gpp_atomtype.cpp [604/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gmxcpp.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gmxcpp.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gmxcpp.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/gmxcpp.cpp [605/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readrot.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readrot.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readrot.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/readrot.cpp [606/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/tomorse.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/tomorse.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/tomorse.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/tomorse.cpp [607/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/crosscorr.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/crosscorr.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/crosscorr.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/correlationfunctions/crosscorr.cpp [608/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topdirs.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topdirs.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topdirs.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/topdirs.cpp [609/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_xpm2ps.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_xpm2ps.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_xpm2ps.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_xpm2ps.cpp [610/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/toputil.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/toputil.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/toputil.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/toputil.cpp [611/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_wham.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_wham.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_wham.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_wham.cpp [612/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topshake.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topshake.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topshake.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/topshake.cpp [613/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datamodule.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datamodule.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datamodule.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/analysisdata/datamodule.cpp [614/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/gmx_lmcurve.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/gmx_lmcurve.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/gmx_lmcurve.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/correlationfunctions/gmx_lmcurve.cpp [615/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/insert_molecules.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/insert_molecules.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/insert_molecules.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/insert_molecules.cpp [616/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/polynomials.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/polynomials.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/polynomials.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/correlationfunctions/polynomials.cpp [617/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/integrate.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/integrate.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/integrate.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/correlationfunctions/integrate.cpp [618/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_hbond.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_hbond.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_hbond.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_hbond.cpp [619/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/manyautocorrelation.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/manyautocorrelation.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/manyautocorrelation.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/correlationfunctions/manyautocorrelation.cpp [620/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/xlate.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/xlate.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/xlate.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/xlate.cpp [621/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/dataframe.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/dataframe.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/dataframe.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/analysisdata/dataframe.cpp [622/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/statistics/statistics.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/statistics/statistics.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/statistics/statistics.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/statistics/statistics.cpp [623/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/expfit.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/expfit.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/expfit.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/correlationfunctions/expfit.cpp [624/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/analysisdata.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/analysisdata.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/analysisdata.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/analysisdata/analysisdata.cpp [625/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/dataproxy.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/dataproxy.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/dataproxy.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/analysisdata/dataproxy.cpp [626/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/specbond.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/specbond.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/specbond.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/specbond.cpp [627/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/abstractdata.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/abstractdata.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/abstractdata.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/analysisdata/abstractdata.cpp [628/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/solvate.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/solvate.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/solvate.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/solvate.cpp [629/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/frameaverager.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/frameaverager.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/frameaverager.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/analysisdata/modules/frameaverager.cpp [630/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/arraydata.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/arraydata.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/arraydata.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/analysisdata/arraydata.cpp [631/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/autocorr.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/autocorr.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/autocorr.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/correlationfunctions/autocorr.cpp [632/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_ad.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_ad.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_ad.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/gen_ad.cpp [633/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datamodulemanager.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datamodulemanager.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datamodulemanager.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/analysisdata/datamodulemanager.cpp [634/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadaptercontainer.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadaptercontainer.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadaptercontainer.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/coordinateio/outputadaptercontainer.cpp [635/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/average.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/average.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/average.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/analysisdata/modules/average.cpp [636/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setstarttime.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setstarttime.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setstarttime.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/coordinateio/outputadapters/setstarttime.cpp [637/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/settimestep.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/settimestep.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/settimestep.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/coordinateio/outputadapters/settimestep.cpp [638/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/ter_db.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/ter_db.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/ter_db.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/ter_db.cpp [639/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/displacement.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/displacement.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/displacement.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/analysisdata/modules/displacement.cpp /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/analysisdata/modules/displacement.cpp: In member function ‘virtual void gmx::AnalysisDataDisplacementModule::frameFinished(const gmx::AnalysisDataFrameHeader&)’: /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/analysisdata/modules/displacement.cpp:279:13: warning: variable ‘k’ set but not used [-Wunused-but-set-variable=] 279 | int k = 1; | ^ At top level: cc1plus: note: unrecognized command-line option ‘-Wno-cast-function-type-strict’ may have been intended to silence earlier diagnostics cc1plus: note: unrecognized command-line option ‘-Wno-suggest-destructor-override’ may have been intended to silence earlier diagnostics [640/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/x2top.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/x2top.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/x2top.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/x2top.cpp [641/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setprecision.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setprecision.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setprecision.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/coordinateio/outputadapters/setprecision.cpp [642/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setforces.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setforces.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setforces.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/coordinateio/outputadapters/setforces.cpp [643/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setvelocities.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setvelocities.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setvelocities.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/coordinateio/outputadapters/setvelocities.cpp [644/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/outputselector.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/outputselector.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/outputselector.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/coordinateio/outputadapters/outputselector.cpp [645/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/frameconverters/register.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/frameconverters/register.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/frameconverters/register.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/coordinateio/frameconverters/register.cpp [646/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setatoms.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setatoms.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setatoms.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/coordinateio/outputadapters/setatoms.cpp [647/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/resall.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/resall.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/resall.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/resall.cpp [648/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/lifetime.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/lifetime.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/lifetime.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/analysisdata/modules/lifetime.cpp [649/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datastorage.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datastorage.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datastorage.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/analysisdata/datastorage.cpp [650/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/requirements.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/requirements.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/requirements.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/coordinateio/requirements.cpp [651/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules.cpp [652/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/analysissettings.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/analysissettings.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/analysissettings.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/analysissettings.cpp [653/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topio.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topio.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topio.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/topio.cpp [654/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/plot.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/plot.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/plot.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/analysisdata/modules/plot.cpp [655/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/coordinatefile.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/coordinatefile.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/coordinatefile.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/coordinateio/coordinatefile.cpp [656/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/isotope.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/isotope.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/isotope.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/isotope.cpp [657/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/convert_trj.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/convert_trj.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/convert_trj.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/convert_trj.cpp [658/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/cmdlinerunner.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/cmdlinerunner.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/cmdlinerunner.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/cmdlinerunner.cpp [659/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_vsite.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_vsite.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_vsite.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/gen_vsite.cpp [660/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/vsite_parm.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/vsite_parm.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/vsite_parm.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/vsite_parm.cpp [661/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/analysismodule.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/analysismodule.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/analysismodule.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/analysismodule.cpp [662/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/gyrate.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/gyrate.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/gyrate.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/gyrate.cpp [663/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/histogram.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/histogram.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/histogram.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/analysisdata/modules/histogram.cpp [664/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering-debye-sans.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering-debye-sans.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering-debye-sans.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/scattering-debye-sans.cpp [665/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/extract_cluster.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/extract_cluster.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/extract_cluster.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/extract_cluster.cpp [666/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/distance.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/distance.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/distance.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/distance.cpp [667/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering-debye-saxs.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering-debye-saxs.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering-debye-saxs.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/scattering-debye-saxs.cpp [668/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/freevolume.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/freevolume.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/freevolume.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/freevolume.cpp [669/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scatteringfactors.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scatteringfactors.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scatteringfactors.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/scatteringfactors.cpp [670/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2top.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2top.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2top.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/pdb2top.cpp [671/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering-debye.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering-debye.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering-debye.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/scattering-debye.cpp [672/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/pairdist.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/pairdist.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/pairdist.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/pairdist.cpp [673/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/angle.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/angle.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/angle.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/angle.cpp [674/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/trajectory.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/trajectory.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/trajectory.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/trajectory.cpp [675/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/rdf.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/rdf.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/rdf.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/rdf.cpp [676/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/conformation_utilities.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/conformation_utilities.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/conformation_utilities.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxlib/conformation_utilities.cpp [677/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/surfacearea.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/surfacearea.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/surfacearea.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/surfacearea.cpp [678/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tools/mk_angndx.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/tools/mk_angndx.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/tools/mk_angndx.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/tools/mk_angndx.cpp [679/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/topologyinformation.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/topologyinformation.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/topologyinformation.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/topologyinformation.cpp [680/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/runnercommon.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/runnercommon.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/runnercommon.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/runnercommon.cpp [681/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/network.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/network.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/network.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxlib/network.cpp [682/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nrnb.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nrnb.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nrnb.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxlib/nrnb.cpp [683/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/scattering.cpp [684/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_4x4.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_4x4.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_4x4.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_reference/kernel_ref_4x4.cpp [685/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/checkpointhandler.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/checkpointhandler.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/checkpointhandler.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/checkpointhandler.cpp [686/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/sasa.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/sasa.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/sasa.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/sasa.cpp [687/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calcvir.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calcvir.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calcvir.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/calcvir.cpp [688/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calcmu.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calcmu.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calcmu.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/calcmu.cpp [689/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tools/eneconv.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/tools/eneconv.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/tools/eneconv.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/tools/eneconv.cpp [690/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tools/report_methods.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/tools/report_methods.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/tools/report_methods.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/tools/report_methods.cpp [691/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/boxdeformation.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/boxdeformation.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/boxdeformation.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/boxdeformation.cpp [692/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/broadcaststructs.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/broadcaststructs.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/broadcaststructs.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/broadcaststructs.cpp [693/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tools/dump.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/tools/dump.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/tools/dump.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/tools/dump.cpp [694/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/msd.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/msd.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/msd.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/msd.cpp [695/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/energydrifttracker.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/energydrifttracker.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/energydrifttracker.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/energydrifttracker.cpp [696/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tools/check.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/tools/check.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/tools/check.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/tools/check.cpp [697/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/select.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/select.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/select.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/select.cpp [698/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/expanded_internal.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/expanded_internal.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/expanded_internal.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/expanded_internal.cpp [699/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tools/trjcat.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/tools/trjcat.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/tools/trjcat.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/tools/trjcat.cpp [700/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/ebin.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/ebin.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/ebin.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/ebin.cpp [701/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tools/pme_error.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/tools/pme_error.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/tools/pme_error.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/tools/pme_error.cpp [702/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/dssp.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/dssp.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/dssp.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/dssp.cpp [703/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/freeenergyparameters.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/freeenergyparameters.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/freeenergyparameters.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/freeenergyparameters.cpp [704/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constraintrange.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constraintrange.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constraintrange.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/constraintrange.cpp [705/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/lincs_constraint_group_sizes.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/lincs_constraint_group_sizes.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/lincs_constraint_group_sizes.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/lincs_constraint_group_sizes.cpp [706/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/grompp.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/grompp.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/grompp.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/grompp.cpp [707/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tools/make_ndx.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/tools/make_ndx.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/tools/make_ndx.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/tools/make_ndx.cpp [708/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/enerdata_utils.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/enerdata_utils.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/enerdata_utils.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/enerdata_utils.cpp [709/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/gmx_omp_nthreads.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/gmx_omp_nthreads.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/gmx_omp_nthreads.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/gmx_omp_nthreads.cpp [710/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constraint_gpu_helpers.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constraint_gpu_helpers.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constraint_gpu_helpers.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/constraint_gpu_helpers.cpp [711/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/groupcoord.cpp [712/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdgraph_gpu_impl.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdgraph_gpu_impl.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdgraph_gpu_impl.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/mdgraph_gpu_impl.cpp [713/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tools/convert_tpr.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/tools/convert_tpr.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/tools/convert_tpr.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/tools/convert_tpr.cpp [714/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tools/trjconv.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/tools/trjconv.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/tools/trjconv.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/tools/trjconv.cpp [715/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/toppush.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/toppush.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/toppush.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/toppush.cpp [716/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/dispersioncorrection.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/dispersioncorrection.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/dispersioncorrection.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/dispersioncorrection.cpp [717/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/rbin.cpp [718/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/force.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/force.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/force.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/force.cpp [719/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/simulationsignal.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/simulationsignal.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/simulationsignal.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/simulationsignal.cpp [720/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tools/tune_pme.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/tools/tune_pme.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/tools/tune_pme.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/tools/tune_pme.cpp [721/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2gmx.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2gmx.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2gmx.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/pdb2gmx.cpp [722/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sighandler.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sighandler.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sighandler.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/sighandler.cpp [723/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/tgroup.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/tgroup.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/tgroup.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/tgroup.cpp [724/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stophandler.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stophandler.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stophandler.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/stophandler.cpp [725/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rf_util.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rf_util.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rf_util.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/rf_util.cpp [726/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/resethandler.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/resethandler.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/resethandler.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/resethandler.cpp [727/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/hbond.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/hbond.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/hbond.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/hbond.cpp [728/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/perf_est.cpp [729/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/mdebin_bar.cpp [730/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calc_verletbuf.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calc_verletbuf.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calc_verletbuf.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/calc_verletbuf.cpp [731/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/shake.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/shake.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/shake.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/shake.cpp [732/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/coupling.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/coupling.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/coupling.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/coupling.cpp [733/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stat.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stat.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stat.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/stat.cpp [734/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/gpuforcereduction_impl_stubs.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/gpuforcereduction_impl_stubs.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/gpuforcereduction_impl_stubs.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/gpuforcereduction_impl_stubs.cpp [735/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constr.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constr.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constr.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/constr.cpp [736/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update_constrain_gpu_impl_stubs.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update_constrain_gpu_impl_stubs.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update_constrain_gpu_impl_stubs.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/update_constrain_gpu_impl_stubs.cpp [737/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/md_support.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/md_support.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/md_support.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/md_support.cpp [738/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readpull.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readpull.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readpull.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/readpull.cpp [739/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdatoms.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdatoms.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdatoms.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/mdatoms.cpp [740/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/splitter.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/splitter.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/splitter.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/splitter.cpp [741/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/expanded.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/expanded.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/expanded.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/expanded.cpp [742/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/mdoutf.cpp [743/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/trajectory_writing.cpp [744/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wholemoleculetransform.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wholemoleculetransform.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wholemoleculetransform.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/wholemoleculetransform.cpp [745/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update_vv.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update_vv.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update_vv.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/update_vv.cpp [746/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/correlationgrid.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/correlationgrid.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/correlationgrid.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/awh/correlationgrid.cpp [747/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/pointstate.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/pointstate.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/pointstate.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/awh/pointstate.cpp [748/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biasparams.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biasparams.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biasparams.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/awh/biasparams.cpp [749/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingoutputprovider.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingoutputprovider.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingoutputprovider.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/densityfitting/densityfittingoutputprovider.cpp [750/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/histogramsize.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/histogramsize.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/histogramsize.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/awh/histogramsize.cpp [751/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/wall.cpp [752/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/energyoutput.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/energyoutput.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/energyoutput.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/energyoutput.cpp [753/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroupscog.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroupscog.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroupscog.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/updategroupscog.cpp [754/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/correlationtensor.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/correlationtensor.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/correlationtensor.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/awh/correlationtensor.cpp [755/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/correlationhistory.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/correlationhistory.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/correlationhistory.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/awh/correlationhistory.cpp [756/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/coordstate.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/coordstate.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/coordstate.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/awh/coordstate.cpp [757/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroups.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroups.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroups.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/updategroups.cpp [758/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingparameters.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingparameters.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingparameters.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/densityfitting/densityfittingparameters.cpp [759/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biassharing.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biassharing.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biassharing.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/awh/biassharing.cpp [760/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingamplitudelookup.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingamplitudelookup.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingamplitudelookup.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/densityfitting/densityfittingamplitudelookup.cpp [761/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vcm.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vcm.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vcm.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/vcm.cpp [762/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/membed.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/membed.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/membed.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/membed.cpp [763/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/settle.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/settle.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/settle.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/settle.cpp [764/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/bias.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/bias.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/bias.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/awh/bias.cpp [765/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biasgrid.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biasgrid.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biasgrid.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/awh/biasgrid.cpp [766/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/forcerec.cpp /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/forcerec.cpp: In function ‘std::vector makeLJPmeC6GridCorrectionParameters(int, gmx::ArrayRef, LongRangeVdW)’: /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/forcerec.cpp:181:23: warning: variable ‘k’ set but not used [-Wunused-but-set-variable=] 181 | int k = 0; | ^ At top level: cc1plus: note: unrecognized command-line option ‘-Wno-cast-function-type-strict’ may have been intended to silence earlier diagnostics cc1plus: note: unrecognized command-line option ‘-Wno-suggest-destructor-override’ may have been intended to silence earlier diagnostics [767/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biaswriter.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biaswriter.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biaswriter.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/awh/biaswriter.cpp [768/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/nnpot/binary_information.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/nnpot/binary_information.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/nnpot/binary_information.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/nnpot/binary_information.cpp [769/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readir.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readir.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readir.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/readir.cpp [770/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/electricfield.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/electricfield.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/electricfield.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/electricfield.cpp [771/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarssimulationsparameters.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarssimulationsparameters.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarssimulationsparameters.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/colvars/colvarssimulationsparameters.cpp [772/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmforceprovider_stub.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmforceprovider_stub.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmforceprovider_stub.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/qmmm/qmmmforceprovider_stub.cpp [773/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/plumed/plumedOptions.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/plumed/plumedOptions.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/plumed/plumedOptions.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/plumed/plumedOptions.cpp [774/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/lincs.cpp /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/lincs.cpp: In function ‘void gmx::lincs_update_atoms(Lincs*, int, real, ArrayRef, ArrayRef >, ArrayRef, real (*)[3])’: /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/lincs.cpp:513:19: warning: ‘master’ construct deprecated since OpenMP 5.1, use ‘masked’ [-Wdeprecated-openmp] 513 | #pragma omp master | ^ /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/lincs.cpp: In function ‘void gmx::do_lincs(ArrayRefWithPadding >, ArrayRefWithPadding >, const real (*)[3], t_pbc*, Lincs*, int, ArrayRef, gmx_domdec_t*, bool, real, bool*, real, ArrayRef >, bool, real (*)[3], gmx_wallcycle*)’: /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/lincs.cpp:1189:19: warning: ‘master’ construct deprecated since OpenMP 5.1, use ‘masked’ [-Wdeprecated-openmp] 1189 | #pragma omp master | ^ At top level: cc1plus: note: unrecognized command-line option ‘-Wno-cast-function-type-strict’ may have been intended to silence earlier diagnostics cc1plus: note: unrecognized command-line option ‘-Wno-suggest-destructor-override’ may have been intended to silence earlier diagnostics [775/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmforceproviderstate.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmforceproviderstate.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmforceproviderstate.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/qmmm/qmmmforceproviderstate.cpp [776/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/awh.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/awh.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/awh.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/awh/awh.cpp [777/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/listed_internal.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/listed_internal.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/listed_internal.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/listed_forces/listed_internal.cpp [778/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sim_util.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sim_util.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sim_util.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/sim_util.cpp [779/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/nnpot/nnpotforceprovider_stub.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/nnpot/nnpotforceprovider_stub.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/nnpot/nnpotforceprovider_stub.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/nnpot/nnpotforceprovider_stub.cpp [780/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/listed_forces_gpu_impl.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/listed_forces_gpu_impl.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/listed_forces_gpu_impl.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/listed_forces/listed_forces_gpu_impl.cpp [781/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarspreprocessor.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarspreprocessor.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarspreprocessor.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/colvars/colvarspreprocessor.cpp [782/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/restcbt.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/restcbt.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/restcbt.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/listed_forces/restcbt.cpp [783/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmminputgenerator.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmminputgenerator.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmminputgenerator.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/qmmm/qmmminputgenerator.cpp [784/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/update.cpp [785/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/read_params.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/read_params.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/read_params.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/awh/read_params.cpp [786/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfitting.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfitting.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfitting.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/densityfitting/densityfitting.cpp [787/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/plumed/plumedMDModule.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/plumed/plumedMDModule.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/plumed/plumedMDModule.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/plumed/plumedMDModule.cpp [788/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald_utils.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald_utils.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald_utils.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/ewald_utils.cpp [789/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/disre.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/disre.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/disre.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/listed_forces/disre.cpp [790/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingforceprovider.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingforceprovider.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingforceprovider.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/densityfitting/densityfittingforceprovider.cpp [791/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/calculate_spline_moduli.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/calculate_spline_moduli.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/calculate_spline_moduli.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/calculate_spline_moduli.cpp [792/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/manage_threading.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/manage_threading.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/manage_threading.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/listed_forces/manage_threading.cpp [793/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarproxygromacs.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarproxygromacs.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarproxygromacs.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/colvars/colvarproxygromacs.cpp [794/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_program.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_program.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_program.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/pme_gpu_program.cpp [795/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/position_restraints.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/position_restraints.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/position_restraints.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/listed_forces/position_restraints.cpp [796/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_program_impl.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_program_impl.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_program_impl.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/pme_gpu_program_impl.cpp [797/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmm.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmm.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmm.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/qmmm/qmmm.cpp [798/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/long_range_correction.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/long_range_correction.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/long_range_correction.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/long_range_correction.cpp [799/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_spline_work.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_spline_work.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_spline_work.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/pme_spline_work.cpp [800/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_pp_comm_gpu_impl.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_pp_comm_gpu_impl.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_pp_comm_gpu_impl.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/pme_pp_comm_gpu_impl.cpp [801/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/nnpot/nnpot.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/nnpot/nnpot.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/nnpot/nnpot.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/nnpot/nnpot.cpp [802/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fft/binary_information.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fft/binary_information.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fft/binary_information.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fft/binary_information.cpp [803/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/ewald.cpp [804/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gather.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gather.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gather.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/pme_gather.cpp [805/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarsMDModule.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarsMDModule.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarsMDModule.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/colvars/colvarsMDModule.cpp [806/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/listed_forces.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/listed_forces.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/listed_forces.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/listed_forces/listed_forces.cpp [807/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarsforceprovider.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarsforceprovider.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarsforceprovider.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/colvars/colvarsforceprovider.cpp [808/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_force_sender_gpu_impl.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_force_sender_gpu_impl.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_force_sender_gpu_impl.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/pme_force_sender_gpu_impl.cpp [809/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpueventsynchronizer_helpers.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpueventsynchronizer_helpers.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpueventsynchronizer_helpers.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gpu_utils/gpueventsynchronizer_helpers.cpp [810/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_coordinate_receiver_gpu_impl.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_coordinate_receiver_gpu_impl.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_coordinate_receiver_gpu_impl.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/pme_coordinate_receiver_gpu_impl.cpp [811/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/pairs.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/pairs.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/pairs.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/listed_forces/pairs.cpp [812/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vsite.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vsite.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vsite.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/vsite.cpp [813/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/device_stream.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/device_stream.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/device_stream.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gpu_utils/device_stream.cpp [814/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/pmalloc.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/pmalloc.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/pmalloc.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gpu_utils/pmalloc.cpp [815/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gpu_utils/gpu_utils.cpp [816/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/clfftinitializer.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/clfftinitializer.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/clfftinitializer.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gpu_utils/clfftinitializer.cpp [817/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biasstate.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biasstate.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biasstate.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/awh/biasstate.cpp [818/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/nvshmem_manager.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/nvshmem_manager.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/nvshmem_manager.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gpu_utils/nvshmem_manager.cpp [819/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/device_context.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/device_context.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/device_context.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gpu_utils/device_context.cpp [820/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils_impl.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils_impl.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils_impl.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gpu_utils/gpu_utils_impl.cpp [821/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/binary_information.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/binary_information.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/binary_information.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gpu_utils/binary_information.cpp [822/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/device_stream_manager.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/device_stream_manager.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/device_stream_manager.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gpu_utils/device_stream_manager.cpp [823/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fft/calcgrid.cpp [824/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fft/fft.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fft/fft.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fft/fft.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fft/fft.cpp [825/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/orires.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/orires.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/orires.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/listed_forces/orires.cpp [826/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/hostallocator.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/hostallocator.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/hostallocator.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gpu_utils/hostallocator.cpp [827/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_pp.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_pp.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_pp.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/pme_pp.cpp [828/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/plumed/plumedforceprovider.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/plumed/plumedforceprovider.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/plumed/plumedforceprovider.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/plumed/plumedforceprovider.cpp [829/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fft/parallel_3dfft.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fft/parallel_3dfft.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fft/parallel_3dfft.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fft/parallel_3dfft.cpp [830/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_redistribute.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_redistribute.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_redistribute.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/pme_redistribute.cpp [831/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fft/fft_fftw3.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fft/fft_fftw3.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fft/fft_fftw3.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fft/fft_fftw3.cpp [832/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_grid.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_grid.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_grid.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/pme_grid.cpp [833/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/hardware/identifyavx512fmaunits.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/hardware/identifyavx512fmaunits.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/hardware/identifyavx512fmaunits.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/hardware/identifyavx512fmaunits.cpp [834/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingoptions.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingoptions.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingoptions.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/densityfitting/densityfittingoptions.cpp [835/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_spread.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_spread.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_spread.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/pme_spread.cpp [836/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/hardware/device_management.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/hardware/device_management.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/hardware/device_management.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/hardware/device_management.cpp [837/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_load_balancing.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_load_balancing.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_load_balancing.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/pme_load_balancing.cpp [838/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fft/fft5d.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fft/fft5d.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fft/fft5d.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fft/fft5d.cpp [839/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarsoptions.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarsoptions.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarsoptions.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/colvars/colvarsoptions.cpp [840/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/legacymdrunoptions.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrun/legacymdrunoptions.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/legacymdrunoptions.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/legacymdrunoptions.cpp [841/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/legacysimulator.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrun/legacysimulator.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/legacysimulator.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/legacysimulator.cpp [842/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -DGMX_SIMD_ENUM_VALUE="gmx::SimdType::Arm_NeonAsimd" -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/hardware/simd_support.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/hardware/simd_support.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/hardware/simd_support.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/hardware/simd_support.cpp [843/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_solve.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_solve.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_solve.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/pme_solve.cpp [844/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/membedholder.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrun/membedholder.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/membedholder.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/membedholder.cpp [845/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/hardware/device_management_common.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/hardware/device_management_common.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/hardware/device_management_common.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/hardware/device_management_common.cpp [846/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationcontext.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationcontext.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationcontext.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/simulationcontext.cpp [847/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/freeenergy.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/freeenergy.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/freeenergy.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrunutility/freeenergy.cpp [848/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/hardware/printhardware.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/hardware/printhardware.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/hardware/printhardware.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/hardware/printhardware.cpp [849/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/print_validation.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/print_validation.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/print_validation.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrunutility/print_validation.cpp [850/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion-gen.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion-gen.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion-gen.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/gromacs/utility/baseversion-gen.cpp [851/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_only.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_only.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_only.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/pme_only.cpp [852/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/hardware/detecthardware.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/hardware/detecthardware.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/hardware/detecthardware.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/hardware/detecthardware.cpp [853/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationinputhandle.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationinputhandle.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationinputhandle.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/simulationinputhandle.cpp [854/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/nnpot/nnpotoptions.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/nnpot/nnpotoptions.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/nnpot/nnpotoptions.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/nnpot/nnpotoptions.cpp [855/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/logging.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/logging.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/logging.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrunutility/logging.cpp [856/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/printtime.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/printtime.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/printtime.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrunutility/printtime.cpp [857/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/bonded.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/bonded.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/bonded.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/listed_forces/bonded.cpp [858/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/state_propagator_data_gpu_impl.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/state_propagator_data_gpu_impl.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/state_propagator_data_gpu_impl.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdtypes/state_propagator_data_gpu_impl.cpp [859/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationinput.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationinput.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationinput.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/simulationinput.cpp [860/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/mdmodulesnotifiers.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/mdmodulesnotifiers.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/mdmodulesnotifiers.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrunutility/mdmodulesnotifiers.cpp [861/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/plainpairlistranges.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/plainpairlistranges.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/plainpairlistranges.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrunutility/plainpairlistranges.cpp [862/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/binary_information.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrun/binary_information.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/binary_information.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/binary_information.cpp [863/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/md5.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/md5.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/md5.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/md5.cpp [864/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/hardware/cpuinfo.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/hardware/cpuinfo.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/hardware/cpuinfo.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/hardware/cpuinfo.cpp [865/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/replicaexchange.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrun/replicaexchange.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/replicaexchange.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/replicaexchange.cpp [866/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/multisim.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/multisim.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/multisim.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrunutility/multisim.cpp [867/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/filetypes.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/filetypes.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/filetypes.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/filetypes.cpp [868/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmoptions.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmoptions.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmoptions.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/qmmm/qmmmoptions.cpp [869/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/espio.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/espio.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/espio.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/espio.cpp [870/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/gmxfio.cpp [871/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulatorbuilder.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulatorbuilder.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulatorbuilder.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/simulatorbuilder.cpp [872/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/confio.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/confio.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/confio.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/confio.cpp [873/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio_xdr.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio_xdr.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio_xdr.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/gmxfio_xdr.cpp [874/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/g96io.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/g96io.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/g96io.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/g96io.cpp [875/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/mrcdensitymapheader.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/mrcdensitymapheader.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/mrcdensitymapheader.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/mrcdensitymapheader.cpp [876/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/mimic.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrun/mimic.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/mimic.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/mimic.cpp [877/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/mrcserializer.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/mrcserializer.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/mrcserializer.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/mrcserializer.cpp [878/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/oenv.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/oenv.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/oenv.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/oenv.cpp [879/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/timecontrol.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/timecontrol.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/timecontrol.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/timecontrol.cpp [880/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/libxdrf.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/libxdrf.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/libxdrf.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/libxdrf.cpp [881/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/mtxio.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/mtxio.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/mtxio.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/mtxio.cpp [882/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/handlerestart.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/handlerestart.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/handlerestart.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrunutility/handlerestart.cpp [883/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/rerun.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrun/rerun.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/rerun.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/rerun.cpp [884/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/groio.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/groio.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/groio.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/groio.cpp [885/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/mdmodules.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrun/mdmodules.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/mdmodules.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/mdmodules.cpp [886/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/xdrd.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/xdrd.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/xdrd.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/xdrd.cpp [887/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/mrcdensitymap.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/mrcdensitymap.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/mrcdensitymap.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/mrcdensitymap.cpp [888/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/threadaffinity.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/threadaffinity.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/threadaffinity.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrunutility/threadaffinity.cpp [889/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/hardware/hardwaretopology.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/hardware/hardwaretopology.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/hardware/hardwaretopology.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/hardware/hardwaretopology.cpp [890/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/warninp.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/warninp.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/warninp.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/warninp.cpp [891/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/enxio.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/enxio.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/enxio.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/enxio.cpp [892/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/trrio.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/trrio.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/trrio.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/trrio.cpp [893/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/xtcio.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/xtcio.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/xtcio.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/xtcio.cpp [894/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/writeps.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/writeps.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/writeps.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/writeps.cpp [895/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/mempool.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/mempool.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/mempool.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/mempool.cpp [896/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/shellfc.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrun/shellfc.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/shellfc.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/shellfc.cpp [897/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/centerofmass.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/centerofmass.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/centerofmass.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/centerofmass.cpp [898/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/pme.cpp [899/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/position.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/position.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/position.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/position.cpp [900/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/xdr_serializer.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/xdr_serializer.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/xdr_serializer.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/xdr_serializer.cpp [901/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/pdbio.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/pdbio.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/pdbio.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/pdbio.cpp [902/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/selvalue.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/selvalue.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/selvalue.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/selvalue.cpp [903/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/trxio.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/trxio.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/trxio.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/trxio.cpp [904/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/xvgr.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/xvgr.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/xvgr.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/xvgr.cpp [905/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/selmethod.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/selmethod.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/selmethod.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/selmethod.cpp [906/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/tngio.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/tngio.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/tngio.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/tngio.cpp [907/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/poscalc.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/poscalc.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/poscalc.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/poscalc.cpp [908/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/evaluate.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/evaluate.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/evaluate.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/evaluate.cpp [909/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_distance.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_distance.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_distance.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/sm_distance.cpp [910/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/scanner_internal.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/scanner_internal.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/scanner_internal.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/scanner_internal.cpp [911/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoptionbehavior.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoptionbehavior.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoptionbehavior.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/selectionoptionbehavior.cpp [912/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_compare.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_compare.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_compare.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/sm_compare.cpp [913/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/tpi.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrun/tpi.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/tpi.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/tpi.cpp /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/tpi.cpp: In member function ‘std::pair gmx::TestParticleInsertion::performSingleInsertion(double, int64_t, bool, const gmx::RVec&, t_state*, gmx::MdrunScheduleWorkload*, gmx_wallcycle*, t_nrnb*)’: /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/tpi.cpp:497:85: note: parameter passing for argument of type ‘std::pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 497 | t_nrnb* nrnb) | ^ [914/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/nbsearch.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/nbsearch.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/nbsearch.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/nbsearch.cpp [915/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/selection.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/selection.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/selection.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/selection.cpp [916/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/readinp.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/readinp.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/readinp.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/readinp.cpp [917/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoptionmanager.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoptionmanager.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoptionmanager.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/selectionoptionmanager.cpp [918/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_position.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_position.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_position.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/sm_position.cpp [919/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_merge.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_merge.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_merge.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/sm_merge.cpp [920/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_insolidangle.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_insolidangle.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_insolidangle.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/sm_insolidangle.cpp [921/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/selhelp.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/selhelp.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/selhelp.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/selhelp.cpp [922/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_permute.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_permute.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_permute.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/sm_permute.cpp [923/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/minimize.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrun/minimize.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/minimize.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/minimize.cpp [924/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/selelem.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/selelem.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/selelem.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/selelem.cpp [925/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/indexutil.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/indexutil.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/indexutil.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/indexutil.cpp [926/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/md.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrun/md.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/md.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/md.cpp [927/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_same.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_same.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_same.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/sm_same.cpp [928/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoption.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoption.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoption.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/selectionoption.cpp [929/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fopenmp -MD -MT share/template/CMakeFiles/template.dir/template.cpp.o -MF share/template/CMakeFiles/template.dir/template.cpp.o.d -o share/template/CMakeFiles/template.dir/template.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/share/template/template.cpp [930/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/symrec.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/symrec.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/symrec.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/symrec.cpp [931/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_simple.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_simple.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_simple.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/sm_simple.cpp [932/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/parsetree.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/parsetree.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/parsetree.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/parsetree.cpp [933/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/params.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/params.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/params.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/params.cpp [934/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/selectioncollection.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/selectioncollection.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/selectioncollection.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/selectioncollection.cpp [935/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/compiler.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/compiler.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/compiler.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/compiler.cpp [936/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/checkpoint.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/checkpoint.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/checkpoint.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/checkpoint.cpp [937/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/runner.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrun/runner.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/runner.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/runner.cpp [938/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/tpxio.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/tpxio.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/tpxio.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/tpxio.cpp [939/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/matio.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/matio.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/matio.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/matio.cpp [940/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_keywords.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_keywords.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_keywords.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/sm_keywords.cpp [941/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/freeenergykernel.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/freeenergykernel.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/freeenergykernel.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/freeenergykernel.cpp [942/944] : && /usr/bin/cmake -E rm -f lib/libgromacs_mpich_d.a && /usr/bin/ar qc lib/libgromacs_mpich_d.a src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o src/gromacs/selection/CMakeFiles/scanner.dir/parser.cpp.o src/gromacs/selection/CMakeFiles/scanner.dir/scanner.cpp.o src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr.cpp.o src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr_array.cpp.o src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr_float.cpp.o src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr_stdio.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar_neuralnetworkcompute.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvaratoms.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abf.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abmd.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_alb.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram_reweight_amd.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_meta.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_opes.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_restraint.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_alchlambda.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_angles.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_apath.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_combination.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_coordnums.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_distances.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_gpath.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_neuralnetwork.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_protein.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_rotations.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_torchann.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_volmaps.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvardeps.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid_integrate.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarmodule.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparams.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparse.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_io.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_replicas.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_system.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_tcl.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_volmaps.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvars_memstream.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_bias.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_colvar.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvartypes.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarvalue.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/nr_jacobi.cpp.o src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/energyterm.cpp.o src/gromacs/fmm/CMakeFiles/fmm.dir/fmm_mdmodule.cpp.o src/gromacs/fmm/CMakeFiles/fmm.dir/fmm_mdpoptions.cpp.o src/gromacs/fmm/CMakeFiles/fmm.dir/fmm_mdpvalidator.cpp.o src/gromacs/fmm/CMakeFiles/fmm.dir/fmmforceproviderbuilder.cpp.o src/gromacs/fmm/CMakeFiles/fmm.dir/fmmoptions.cpp.o src/gromacs/fmm/CMakeFiles/fmm.dir/fmmforceprovider_stub.cpp.o src/gromacs/fileio/h5md/CMakeFiles/h5md.dir/h5md.cpp.o src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/binary_information.cpp.o src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/eigensolver.cpp.o src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/matrix.cpp.o src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/andersentemperaturecoupling.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/constraintelement.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/domdechelper.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/energydata.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/expandedensembleelement.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/firstorderpressurecoupling.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/forceelement.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/freeenergyperturbationdata.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/modularsimulator.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/mttk.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/nosehooverchains.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/pmeloadbalancehelper.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/propagator.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/pullelement.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/referencetemperaturemanager.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/signallers.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/simulatoralgorithm.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/topologyholder.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/velocityscalingtemperaturecoupling.cpp.o src/gromacs/options/CMakeFiles/options.dir/abstractoption.cpp.o src/gromacs/options/CMakeFiles/options.dir/abstractsection.cpp.o src/gromacs/options/CMakeFiles/options.dir/basicoptions.cpp.o src/gromacs/options/CMakeFiles/options.dir/behaviorcollection.cpp.o src/gromacs/options/CMakeFiles/options.dir/filenameoption.cpp.o src/gromacs/options/CMakeFiles/options.dir/filenameoptionmanager.cpp.o src/gromacs/options/CMakeFiles/options.dir/options.cpp.o src/gromacs/options/CMakeFiles/options.dir/optionsassigner.cpp.o src/gromacs/options/CMakeFiles/options.dir/optionsection.cpp.o src/gromacs/options/CMakeFiles/options.dir/optionsvisitor.cpp.o src/gromacs/options/CMakeFiles/options.dir/timeunitmanager.cpp.o src/gromacs/options/CMakeFiles/options.dir/treesupport.cpp.o src/gromacs/pulling/CMakeFiles/pulling.dir/output.cpp.o src/gromacs/pulling/CMakeFiles/pulling.dir/pull.cpp.o src/gromacs/pulling/CMakeFiles/pulling.dir/pull_rotation.cpp.o src/gromacs/pulling/CMakeFiles/pulling.dir/pullcoordexpressionparser.cpp.o src/gromacs/pulling/CMakeFiles/pulling.dir/pullutil.cpp.o src/gromacs/pulling/CMakeFiles/pulling.dir/transformationcoordinate.cpp.o src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/decidegpuusage.cpp.o src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/decidesimulationworkload.cpp.o src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/findallgputasks.cpp.o src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/reportgpuusage.cpp.o src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/resourcedivision.cpp.o src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/taskassignment.cpp.o src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/usergpuids.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/any.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/basenetwork.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/booltype.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/compare.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/coolstuff.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/cstringutil.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/datafilefinder.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/directoryenumerator.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/errorcodes.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/errorformat.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/exceptions.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/fatalerror.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/fileredirector.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/filestream.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/futil.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxassert.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxomp.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/ikeyvaluetreeerror.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/init.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/int64_to_int.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetree.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreemdpwriter.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreetransform.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/logger.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/loggerbuilder.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/message_string_collector.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/mpicomm.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/mpiinfo.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/niceheader.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/path.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/physicalnodecommunicator.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/pleasecite.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/programcontext.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/smalloc.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/strconvert.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/strdb.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/stringstream.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/stringutil.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/sysinfo.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/textreader.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/veccompare.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/vecdump.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/atomdata.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_setup.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_system.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/exclusionchecker.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/freeenergydispatch.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/freeenergykernel.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/grid.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/gridset.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernel_common.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kerneldispatch.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_gpu_ref.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_1x1.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_4x4.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_prune.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_geometry.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_setup.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist_simd_kernel.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist_tuning.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistparams.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistset.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistsets.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistwork.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairsearch.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/prunekerneldispatch.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/simd_energy_accumulator.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/simd_prune_kernel.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpwriter.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineinit.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodule.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodulemanager.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodulesettings.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineoptionsmodule.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/commandline/filenm.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/commandline/pargs.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/commandline/shellcompletions.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/commandline/viewit.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/atomdistribution.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/box.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/cellsizes.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/collect.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/computemultibodycutoffs.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/distribute.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlb.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/domainpaircomm.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_zones.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/dump.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/haloexchange.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/haloexchangesetup.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomset.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetdata.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetmanager.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/localtopology.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/localtopologychecker.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/makebondedlinks.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/mdsetup.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/nsgrid.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/partition.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/reversetopology.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/utility.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/gpuhaloexchange_impl.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/math/coordinatetransformation.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/math/densityfit.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/math/densityfittingforce.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/math/do_fit.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/math/exponentialmovingaverage.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/math/functions.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/math/gausstransform.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/math/invertmatrix.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/math/neldermead.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/math/nrjac.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/math/optimization.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/math/utilities.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/awh_history.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/checkpointdata.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/commrec.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/df_history.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/energyhistory.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/forcebuffers.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/group.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/iforceprovider.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/inputrec.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/interaction_const.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/md_enums.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/multipletimestepping.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/observableshistory.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/observablesreducer.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/state.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/threaded_force_buffer.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpformat.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helptopic.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpwritercontext.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/rstparser.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/boxutilities.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/com.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/mshift.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc_simd.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbcenums.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbcmethods.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/rmpbc.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/random/seed.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/random/tabulatednormaldistribution.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/restraint/manager.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/restraint/restraintmdmodule.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/serialization/inmemoryserializer.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/serialization/keyvaluetreeserializer.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/tables/cubicsplinetable.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/tables/forcetable.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/tables/quadraticsplinetable.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/tables/splineutil.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/timing/cyclecounter.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/timing/external_tracing.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/timing/wallcycle.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/timing/walltime_accounting.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/topology/atomprop.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/topology/atoms.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/topology/atomsbuilder.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/topology/block.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/topology/embedded_system_preprocessing.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/topology/exclusionblocks.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/topology/forcefieldparameters.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/topology/idef.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/topology/ifunc.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/topology/index.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/topology/invblock.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/topology/mtop_atomloops.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/topology/mtop_util.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/topology/residuetypes.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/topology/symtab.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/topology/topology.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/topology/topsort.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectory/energyframe.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectory/trajectoryframe.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/swap/swapcoords.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/essentialdynamics/edsam.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/imd/imd.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/imd/imdsocket.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mimic/communicator_stub.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mimic/utilities.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/anadih.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/angle_correction.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/binsearch.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/cluster_methods.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/cmat.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/dens_filter.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/dlist.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/eigio.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/fitahx.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_anaeig.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_analyze.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_angle.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_awh.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_bar.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_bundle.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_chi.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_cluster.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_clustsize.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_confrms.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_covar.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_current.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_density.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_densmap.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_densorder.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dielectric.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dipoles.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_disre.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dos.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dyecoupl.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_enemat.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_energy.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_filter.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_gyrate.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_h2order.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_hbond.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_helix.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_helixorient.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_hydorder.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_lie.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_make_edi.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_mdmat.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_mindist.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmeig.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmens.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmr.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmtraj.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_order.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_polystat.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_potential.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_principal.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rama.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rms.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rmsdist.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rmsf.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rotacf.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rotmat.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_saltbr.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sans.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_saxs.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sham.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sigeps.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sorient.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_spatial.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_spol.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_tcaf.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_traj.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_trjorder.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_vanhove.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_velacc.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_wham.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_wheel.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_xpm2ps.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/hxprops.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/nrama.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/nsfactor.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/powerspect.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/pp2shift.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/princ.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/sfactor.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/thermochemistry.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/add_par.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/calch.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/compute_io.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/convparm.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/editconf.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/fflibutil.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_ad.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_maxwell_velocities.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_vsite.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genconf.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genhydro.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genion.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genrestr.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gmxcpp.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_atomtype.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_bond_atomtype.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_nextnb.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/grompp.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/h_db.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/hackblock.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/hizzie.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/insert_molecules.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/makeexclusiondistances.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/massrepartitioning.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/nm2type.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2gmx.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2top.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pgutil.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readir.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readpull.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readrot.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/resall.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/solvate.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/specbond.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/ter_db.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/tomorse.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topdirs.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topio.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/toppush.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topshake.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/toputil.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/vsite_parm.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/x2top.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/xlate.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/autocorr.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/crosscorr.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/expfit.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/gmx_lmcurve.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/integrate.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/manyautocorrelation.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/polynomials.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/statistics/statistics.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/abstractdata.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/analysisdata.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/arraydata.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/dataframe.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datamodule.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datamodulemanager.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/dataproxy.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datastorage.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/average.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/displacement.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/frameaverager.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/histogram.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/lifetime.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/plot.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/coordinatefile.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/frameconverters/register.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadaptercontainer.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/outputselector.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setatoms.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setforces.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setprecision.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setstarttime.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/settimestep.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setvelocities.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/requirements.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/analysismodule.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/analysissettings.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/cmdlinerunner.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/angle.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/convert_trj.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/distance.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/dssp.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/extract_cluster.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/freevolume.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/gyrate.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/hbond.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/isotope.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/msd.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/pairdist.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/rdf.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/sasa.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering-debye-sans.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering-debye-saxs.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering-debye.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scatteringfactors.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/select.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/surfacearea.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/trajectory.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/runnercommon.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/topologyinformation.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/tools/check.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/tools/convert_tpr.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/tools/dump.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/tools/eneconv.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/tools/make_ndx.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/tools/mk_angndx.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/tools/pme_error.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/tools/report_methods.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/tools/trjcat.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/tools/trjconv.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/tools/tune_pme.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/conformation_utilities.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/network.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nrnb.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/boxdeformation.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/broadcaststructs.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calc_verletbuf.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calcmu.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calcvir.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/checkpointhandler.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constr.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constraint_gpu_helpers.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constraintrange.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/coupling.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/dispersioncorrection.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/ebin.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/enerdata_utils.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/energydrifttracker.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/energyoutput.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/expanded.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/expanded_internal.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/force.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/freeenergyparameters.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/gmx_omp_nthreads.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/lincs_constraint_group_sizes.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/md_support.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdatoms.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdgraph_gpu_impl.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/membed.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/resethandler.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rf_util.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/settle.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/shake.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sighandler.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sim_util.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/simulationsignal.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/splitter.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stat.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stophandler.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/tgroup.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update_vv.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroups.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroupscog.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vcm.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vsite.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wholemoleculetransform.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/gpuforcereduction_impl_stubs.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update_constrain_gpu_impl_stubs.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/electricfield.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/awh.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/bias.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biasgrid.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biasparams.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biassharing.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biasstate.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biaswriter.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/coordstate.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/correlationgrid.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/correlationhistory.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/correlationtensor.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/histogramsize.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/pointstate.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/read_params.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfitting.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingamplitudelookup.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingforceprovider.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingoptions.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingoutputprovider.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingparameters.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmminputgenerator.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmforceproviderstate.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmoptions.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmm.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmforceprovider_stub.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarsMDModule.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarsoptions.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarspreprocessor.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarssimulationsparameters.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarsforceprovider.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarproxygromacs.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/plumed/plumedforceprovider.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/plumed/plumedOptions.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/plumed/plumedMDModule.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/nnpot/binary_information.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/nnpot/nnpotoptions.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/nnpot/nnpot.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/nnpot/nnpotforceprovider_stub.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/bonded.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/disre.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/listed_forces_gpu_impl.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/listed_forces.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/listed_internal.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/manage_threading.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/orires.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/pairs.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/position_restraints.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/restcbt.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/calculate_spline_moduli.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald_utils.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/long_range_correction.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gather.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_grid.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_load_balancing.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_only.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_pp.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_redistribute.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_solve.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_spline_work.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_spread.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_program.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_program_impl.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_pp_comm_gpu_impl.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_coordinate_receiver_gpu_impl.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_force_sender_gpu_impl.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fft/binary_information.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fft/fft.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fft/fft5d.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fft/parallel_3dfft.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fft/fft_fftw3.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/binary_information.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/clfftinitializer.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/device_stream_manager.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpueventsynchronizer_helpers.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/hostallocator.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/nvshmem_manager.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/device_context.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/device_stream.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils_impl.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/pmalloc.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/hardware/cpuinfo.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/hardware/detecthardware.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/hardware/device_management_common.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/hardware/hardwaretopology.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/hardware/printhardware.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/hardware/identifyavx512fmaunits.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/hardware/simd_support.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/hardware/device_management.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/binary_information.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/legacymdrunoptions.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/legacysimulator.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/md.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/mdmodules.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/membedholder.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/mimic.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/minimize.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/replicaexchange.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/rerun.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/runner.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/shellfc.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationcontext.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationinput.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationinputhandle.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulatorbuilder.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/tpi.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/freeenergy.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/handlerestart.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/logging.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/mdmodulesnotifiers.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/multisim.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/plainpairlistranges.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/print_validation.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/printtime.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/threadaffinity.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/state_propagator_data_gpu_impl.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion-gen.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/checkpoint.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/confio.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/enxio.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/espio.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/filetypes.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/g96io.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio_xdr.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/groio.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/libxdrf.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/matio.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/md5.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/mrcdensitymap.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/mrcdensitymapheader.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/mrcserializer.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/mtxio.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/oenv.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/pdbio.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/readinp.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/timecontrol.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/tngio.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/tpxio.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/trrio.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/trxio.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/warninp.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/writeps.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/xdr_serializer.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/xdrd.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/xtcio.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/xvgr.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/centerofmass.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/compiler.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/evaluate.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/indexutil.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/mempool.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/nbsearch.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/params.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/parsetree.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/poscalc.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/position.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/scanner_internal.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/selection.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/selectioncollection.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoption.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoptionbehavior.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoptionmanager.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/selelem.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/selhelp.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/selmethod.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/selvalue.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_compare.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_distance.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_insolidangle.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_keywords.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_merge.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_permute.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_position.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_same.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_simple.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/symrec.cpp.o && /usr/bin/ranlib lib/libgromacs_mpich_d.a && : [943/944] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=share/template/CMakeFiles/template.dir/link.d share/template/CMakeFiles/template.dir/template.cpp.o -o bin/template -Wl,-rpath,/usr/lib64/mpich/lib lib/libgromacs_mpich_d.a /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl && : [944/944] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=src/programs/CMakeFiles/gmx.dir/link.d src/programs/CMakeFiles/gmx_objlib.dir/gmx.cpp.o src/programs/CMakeFiles/gmx_objlib.dir/legacymodules.cpp.o src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o bin/gmx_mpich_d -Wl,-rpath,/usr/lib64/mpich/lib: lib/libgromacs_mpich_d.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl && : In member function ‘performSingleInsertion’: lto1: note: parameter passing for argument of type ‘struct pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 + popd ~/build/BUILD/gromacs-2026.3-build/gromacs-2026.3 + test -n mpich + module unload mpi/mpich-aarch64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw unload mpi/mpich-aarch64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh unload mpi/mpich-aarch64 + eval $'unset LD_LIBRARY_PATH;\nunset MPI_COMPILER;\nMANPATH=\'/usr/share/man:\'; export MANPATH;\nunset MPI_INCLUDE;\nunset MPI_MAN;\nunset MPI_PYTHON_SITEARCH;\nunset _LMFILES_;\nunset LOADEDMODULES;\nunset CMAKE_PREFIX_PATH;\nPKG_CONFIG_PATH=\':/usr/lib64/pkgconfig:/usr/share/pkgconfig\'; export PKG_CONFIG_PATH;\nunset MPI_PYTHON3_SITEARCH;\nunset MPI_FORTRAN_MOD_DIR;\nunset MPI_HOME;\nunset __MODULES_LMCONFLICT;\n__MODULES_SHARE_MANPATH=\':1\'; export __MODULES_SHARE_MANPATH;\nunset MPI_SYSCONFIG;\nunset MPI_SUFFIX;\n__MODULES_SHARE_PKG_CONFIG_PATH=\':1\'; export __MODULES_SHARE_PKG_CONFIG_PATH;\nunset MPI_PYTHON2_SITEARCH;\nunset MPI_LIB;\nPATH=\'/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin\'; export PATH;\nunset MPI_BIN;\ntest 0;' ++ unset LD_LIBRARY_PATH ++ unset MPI_COMPILER ++ MANPATH=/usr/share/man: ++ export MANPATH ++ unset MPI_INCLUDE ++ unset MPI_MAN ++ unset MPI_PYTHON_SITEARCH ++ unset _LMFILES_ ++ unset LOADEDMODULES ++ unset CMAKE_PREFIX_PATH ++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_FORTRAN_MOD_DIR ++ unset MPI_HOME ++ unset __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:1 ++ export __MODULES_SHARE_MANPATH ++ unset MPI_SYSCONFIG ++ unset MPI_SUFFIX ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ unset MPI_PYTHON2_SITEARCH ++ unset MPI_LIB ++ PATH=/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin ++ export PATH ++ unset MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + for mpi in '' mpich openmpi + test -n openmpi + module load mpi/openmpi-aarch64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw load mpi/openmpi-aarch64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh load mpi/openmpi-aarch64 + eval $'MPI_COMPILER=\'openmpi-aarch64\'; export MPI_COMPILER;\nLD_LIBRARY_PATH=\'/usr/lib64/openmpi/lib\'; export LD_LIBRARY_PATH;\nMPI_MAN=\'/usr/share/man/openmpi-aarch64\'; export MPI_MAN;\nMANPATH=\'/usr/share/man/openmpi-aarch64:/usr/share/man:\'; export MANPATH;\nMPI_INCLUDE=\'/usr/include/openmpi-aarch64\'; export MPI_INCLUDE;\n_LMFILES_=\'/usr/share/modulefiles/mpi/openmpi-aarch64\'; export _LMFILES_;\nLOADEDMODULES=\'mpi/openmpi-aarch64\'; export LOADEDMODULES;\nCMAKE_PREFIX_PATH=\'/usr/lib64/openmpi\'; export CMAKE_PREFIX_PATH;\nPKG_CONFIG_PATH=\'/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig\'; export PKG_CONFIG_PATH;\nMPI_PYTHON3_SITEARCH=\'/usr/lib64/python3.15/site-packages/openmpi\'; export MPI_PYTHON3_SITEARCH;\nMPI_HOME=\'/usr/lib64/openmpi\'; export MPI_HOME;\nMPI_FORTRAN_MOD_DIR=\'/usr/lib64/gfortran/modules/openmpi\'; export MPI_FORTRAN_MOD_DIR;\n__MODULES_LMALTNAME=\'mpi/openmpi-aarch64&as|mpi/default&as|mpi/latest\'; export __MODULES_LMALTNAME;\n__MODULES_LMCONFLICT=\'mpi/openmpi-aarch64&mpi\'; export __MODULES_LMCONFLICT;\n__MODULES_SHARE_MANPATH=\':2\'; export __MODULES_SHARE_MANPATH;\nMPI_SUFFIX=\'_openmpi\'; export MPI_SUFFIX;\nMPI_SYSCONFIG=\'/etc/openmpi-aarch64\'; export MPI_SYSCONFIG;\n__MODULES_SHARE_PKG_CONFIG_PATH=\':1\'; export __MODULES_SHARE_PKG_CONFIG_PATH;\nMPI_LIB=\'/usr/lib64/openmpi/lib\'; export MPI_LIB;\nPATH=\'/usr/lib64/openmpi/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin\'; export PATH;\nMPI_BIN=\'/usr/lib64/openmpi/bin\'; export MPI_BIN;\ntest 0;' ++ MPI_COMPILER=openmpi-aarch64 ++ export MPI_COMPILER ++ LD_LIBRARY_PATH=/usr/lib64/openmpi/lib ++ export LD_LIBRARY_PATH ++ MPI_MAN=/usr/share/man/openmpi-aarch64 ++ export MPI_MAN ++ MANPATH=/usr/share/man/openmpi-aarch64:/usr/share/man: ++ export MANPATH ++ MPI_INCLUDE=/usr/include/openmpi-aarch64 ++ export MPI_INCLUDE ++ _LMFILES_=/usr/share/modulefiles/mpi/openmpi-aarch64 ++ export _LMFILES_ ++ LOADEDMODULES=mpi/openmpi-aarch64 ++ export LOADEDMODULES ++ CMAKE_PREFIX_PATH=/usr/lib64/openmpi ++ export CMAKE_PREFIX_PATH ++ PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.15/site-packages/openmpi ++ export MPI_PYTHON3_SITEARCH ++ MPI_HOME=/usr/lib64/openmpi ++ export MPI_HOME ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi ++ export MPI_FORTRAN_MOD_DIR ++ __MODULES_LMALTNAME='mpi/openmpi-aarch64&as|mpi/default&as|mpi/latest' ++ export __MODULES_LMALTNAME ++ __MODULES_LMCONFLICT='mpi/openmpi-aarch64&mpi' ++ export __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:2 ++ export __MODULES_SHARE_MANPATH ++ MPI_SUFFIX=_openmpi ++ export MPI_SUFFIX ++ MPI_SYSCONFIG=/etc/openmpi-aarch64 ++ export MPI_SYSCONFIG ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ MPI_LIB=/usr/lib64/openmpi/lib ++ export MPI_LIB ++ PATH=/usr/lib64/openmpi/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin ++ export PATH ++ MPI_BIN=/usr/lib64/openmpi/bin ++ export MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + mkdir -p openmpi_d + pushd openmpi_d ~/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d ~/build/BUILD/gromacs-2026.3-build/gromacs-2026.3 + test -z openmpi + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX ++ test -n openmpi ++ echo -DGMX_MPI:BOOL=ON -DGMX_THREAD_MPI:BOOL=OFF -DGMX_DEFAULT_SUFFIX:BOOL=OFF -DBUILD_SHARED_LIBS:BOOL=OFF -DGMX_USE_HEFFTE=OFF -DGMX_BINARY_SUFFIX=_openmpi_d -DGMX_LIBS_SUFFIX=_openmpi_d -DCMAKE_INSTALL_BINDIR=/usr/lib64/openmpi/bin -DCMAKE_INSTALL_LIBDIR=/usr/lib64/openmpi/lib ++ test -z openmpi ++ test -n _d ++ echo -DGMX_DOUBLE:BOOL=ON + /usr/bin/cmake -S .. -B redhat-linux-build -G Ninja -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DCMAKE_INSTALL_FULL_SBINDIR:PATH=/usr/bin -DCMAKE_INSTALL_SBINDIR:PATH=bin -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -DBUILD_TESTING:BOOL=ON -DCMAKE_SKIP_INSTALL_RPATH=ON -DGMX_BLAS_USER=flexiblas -DGMX_BUILD_UNITTESTS:BOOL=ON -DGMX_USE_LMFIT=EXTERNAL -DGMX_EXTERNAL_TNG:BOOL=ON -DGMX_EXTERNAL_TINYXML2:BOOL=OFF -DGMX_USE_MUPARSER=EXTERNAL -DGMX_LAPACK_USER=flexiblas -DGMX_USE_RDTSCP=OFF -DGMX_INSTALL_LEGACY_API=ON -DGMX_VERSION_STRING_OF_FORK=Fedora46 -DGMX_SIMD=ARM_NEON_ASIMD -DGMX_MPI:BOOL=ON -DGMX_THREAD_MPI:BOOL=OFF -DGMX_DEFAULT_SUFFIX:BOOL=OFF -DBUILD_SHARED_LIBS:BOOL=OFF -DGMX_USE_HEFFTE=OFF -DGMX_BINARY_SUFFIX=_openmpi_d -DGMX_LIBS_SUFFIX=_openmpi_d -DCMAKE_INSTALL_BINDIR=/usr/lib64/openmpi/bin -DCMAKE_INSTALL_LIBDIR=/usr/lib64/openmpi/lib -DGMX_DOUBLE:BOOL=ON -- The C compiler identification is GNU 16.2.1 -- The CXX compiler identification is GNU 16.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Could NOT find Python3 (missing: Python3_INCLUDE_DIRS Python3_LIBRARIES Development Development.Module Development.Embed) (found suitable version "3.15.0", minimum required is "3.9") -- Found OpenMP_CXX: -fopenmp (found version "5.2") -- Found OpenMP: TRUE (found version "5.2") found components: CXX -- Performing Test CFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS -- Performing Test CFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS - Success -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS -- Performing Test CXXFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Looking for include file unistd.h -- Looking for include file unistd.h - found -- Looking for include file pwd.h -- Looking for include file pwd.h - found -- Looking for include file dirent.h -- Looking for include file dirent.h - found -- Looking for include file time.h -- Looking for include file time.h - found -- Looking for include file sys/time.h -- Looking for include file sys/time.h - found -- Looking for include file io.h -- Looking for include file io.h - not found -- Looking for include file sched.h -- Looking for include file sched.h - found -- Looking for include file xmmintrin.h -- Looking for include file xmmintrin.h - not found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for sysconf -- Looking for sysconf - found -- Looking for nice -- Looking for nice - found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sigaction -- Looking for sigaction - found -- Performing Test HAVE_BUILTIN_CLZ -- Performing Test HAVE_BUILTIN_CLZ - Success -- Performing Test HAVE_BUILTIN_CLZLL -- Performing Test HAVE_BUILTIN_CLZLL - Success -- Looking for clock_gettime in rt -- Looking for clock_gettime in rt - found -- Looking for feenableexcept in m -- Looking for feenableexcept in m - found -- Looking for fedisableexcept in m -- Looking for fedisableexcept in m - found -- Checking for sched.h GNU affinity API -- Performing Test sched_affinity_compile -- Performing Test sched_affinity_compile - Success -- Looking for include file mm_malloc.h -- Looking for include file mm_malloc.h - not found -- Looking for include file malloc.h -- Looking for include file malloc.h - found -- Checking for _mm_malloc() -- Checking for _mm_malloc() - not supported -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - not found -- Found MPI_CXX: /usr/lib64/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") found components: CXX -- GROMACS library will use OpenMPI 5.0.11 -- Performing Test HAS_WARNING_NO_OLD_STYLE_CAST -- Performing Test HAS_WARNING_NO_OLD_STYLE_CAST - Success -- Performing Test HAS_WARNING_NO_CAST_QUAL -- Performing Test HAS_WARNING_NO_CAST_QUAL - Success -- Performing Test HAS_WARNING_NO_SUGGEST_OVERRIDE -- Performing Test HAS_WARNING_NO_SUGGEST_OVERRIDE - Success -- Performing Test HAS_WARNING_NO_SUGGEST_DESTRUCTOR_OVERRIDE -- Performing Test HAS_WARNING_NO_SUGGEST_DESTRUCTOR_OVERRIDE - Success -- Performing Test HAS_WARNING_NO_ZERO_AS_NULL_POINTER_CONSTANT -- Performing Test HAS_WARNING_NO_ZERO_AS_NULL_POINTER_CONSTANT - Success -- Using manually set binary suffix: "_openmpi_d" -- Using manually set library suffix: "_openmpi_d" -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Looking for C++ include pthread.h -- Looking for C++ include pthread.h - found -- Performing Test TEST_ATOMICS -- Performing Test TEST_ATOMICS - Success -- Atomic operations found -- Performing Test PTHREAD_SETAFFINITY -- Performing Test PTHREAD_SETAFFINITY - Success -- Performing Test C_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS -- Performing Test C_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS - Success -- Performing Test CXX_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS -- Performing Test CXX_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS - Success -- Enabling ARM (AArch64) NEON Advanced SIMD instructions using CXX flags: -- Performing Test _callconv___vectorcall -- Performing Test _callconv___vectorcall - Failed -- Performing Test _callconv___regcall -- Performing Test _callconv___regcall - Failed -- Performing Test _callconv_ -- Performing Test _callconv_ - Success -- Torch not found. Neural network potential support will be disabled. -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - not supported -- Detected build CPU vendor - ARM -- Detected build CPU brand - 0xd40 -- Detected build CPU family - 8 -- Detected build CPU model - 1 -- Detected build CPU stepping - 1 -- Detected build CPU features - neon neon_asimd sve -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present -- Checking for fseeko/ftello -- Checking for fseeko/ftello - present -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for pipe support -- Checking for system XDR support -- Checking for system XDR support - not present -- Checking for module 'fftw3' -- Found fftw3, version 3.3.10 -- Looking for fftw_plan_many_dft in /usr/lib64/libfftw3.so -- Looking for fftw_plan_many_dft in /usr/lib64/libfftw3.so - found -- Looking for fftw_plan_many_dft_r2c in /usr/lib64/libfftw3.so -- Looking for fftw_plan_many_dft_r2c in /usr/lib64/libfftw3.so - found -- Looking for fftw_plan_many_dft_c2r in /usr/lib64/libfftw3.so -- Looking for fftw_plan_many_dft_c2r in /usr/lib64/libfftw3.so - found -- Looking for fftw_have_simd_sse in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_sse in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_sse in /usr/lib64/libfftw3.so -- Looking for fftw_have_sse in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_sse2 in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_sse2 in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_sse2 in /usr/lib64/libfftw3.so -- Looking for fftw_have_sse2 in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_avx in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_avx in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_avx2 in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_avx2 in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_avx2_128 in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_avx2_128 in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_avx512 in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_avx512 in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_avx_128_fma in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_avx_128_fma in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_avx_512 in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_avx_512 in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_kcvi in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_kcvi in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_altivec in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_altivec in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_neon in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_neon in /usr/lib64/libfftw3.so - found -- Using external FFT library - FFTW3 -- Checking that user BLAS library flexiblas works -- Looking for dgemm_ -- Looking for dgemm_ - found -- Checking that user LAPACK library flexiblas works -- Looking for cheev_ -- Looking for cheev_ - found -- No image conversion possible without ImageMagick -- Performing Test HAVE_NO_DEPRECATED_COPY -- Performing Test HAVE_NO_DEPRECATED_COPY - Success -- Looking for open_memstream -- Looking for open_memstream - found -- Performing Test HAS_WARNING_EVERYTHING -- Performing Test HAS_WARNING_EVERYTHING - Failed -- Looking for dlopen -- Looking for dlopen - found -- Performing Test HAS_NO_STRINGOP_TRUNCATION -- Performing Test HAS_NO_STRINGOP_TRUNCATION - Success -- Could NOT find HDF5 (missing: HDF5_LIBRARIES HDF5_INCLUDE_DIRS C) (Required is at least version "1.10.7") -- Performing Test HAS_WARNING_NO_CAST_FUNCTION_TYPE_STRICT -- Performing Test HAS_WARNING_NO_CAST_FUNCTION_TYPE_STRICT - Success -- Performing Test HAS_NO_UNUSED -- Performing Test HAS_NO_UNUSED - Success -- Performing Test HAS_NO_UNUSED_PARAMETER -- Performing Test HAS_NO_UNUSED_PARAMETER - Success -- Performing Test HAS_NO_MISSING_DECLARATIONS -- Performing Test HAS_NO_MISSING_DECLARATIONS - Success -- Performing Test HAS_NO_NULL_CONVERSIONS -- Performing Test HAS_NO_NULL_CONVERSIONS - Success -- Performing Test LMFIT_LINKS_OK -- Performing Test LMFIT_LINKS_OK - Success -- Found Lmfit: /usr/include (found suitable version "11.0.0", minimum required is "7.0") -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success -- Performing Test COMPILER_HAS_DEPRECATED_ATTR -- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success -- Could NOT find Sphinx (missing: SPHINX_EXECUTABLE pygments) (Required is at least version "4.0.0") -- Could NOT find LATEX (missing: LATEX_COMPILER) -- Configuring done (19.9s) -- Generating done (0.5s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_Fortran_FLAGS_RELEASE CMAKE_INSTALL_DO_STRIP CMAKE_VERBOSE_MAKEFILE INCLUDE_INSTALL_DIR LIB_INSTALL_DIR LIB_SUFFIX SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build + /usr/bin/cmake --build redhat-linux-build -j32 --verbose Change Dir: '/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build' Run Build Command(s): /usr/bin/ninja-build -v -j 32 [1/944] cd /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3.15 -D PROJECT_VERSION=2026.3-Fedora46 -D PROJECT_SOURCE_DIR=/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3 -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Fedora46 -P /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/cmake/gmxGenerateVersionInfoWithoutGit.cmake [2/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o -MF src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o.d -o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/src/atomic.cpp [3/944] /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -MD -MT src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr_array.cpp.o -MF src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr_array.cpp.o.d -o src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr_array.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/rpc_xdr/xdr_array.cpp [4/944] /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -MD -MT src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr_float.cpp.o -MF src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr_float.cpp.o.d -o src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr_float.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/rpc_xdr/xdr_float.cpp /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/rpc_xdr/xdr_float.cpp: In function ‘bool_t xdr_double(XDR*, double*)’: /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/rpc_xdr/xdr_float.cpp:223:17: warning: unused variable ‘ip’ [-Wunused-variable] 223 | int* ip; | ^~ /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/rpc_xdr/xdr_float.cpp:224:17: warning: unused variable ‘tmp’ [-Wunused-variable] 224 | int32_t tmp[2]; | ^~~ [5/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -MF src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o.d -o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/src/tmpi_malloc.cpp [6/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o -MF src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o.d -o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/src/lock.cpp [7/944] /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -MD -MT src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr_stdio.cpp.o -MF src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr_stdio.cpp.o.d -o src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr_stdio.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/rpc_xdr/xdr_stdio.cpp [8/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o -MF src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o.d -o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/src/errhandler.cpp [9/944] /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -MD -MT src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr.cpp.o -MF src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr.cpp.o.d -o src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/rpc_xdr/xdr.cpp [10/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o -MF src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o.d -o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/src/pthreads.cpp [11/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_torchann.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_torchann.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_torchann.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarcomp_torchann.cpp [12/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_alchlambda.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_alchlambda.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_alchlambda.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarcomp_alchlambda.cpp [13/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_volmaps.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_volmaps.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_volmaps.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarcomp_volmaps.cpp [14/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abmd.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abmd.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abmd.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarbias_abmd.cpp [15/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparams.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparams.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparams.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarparams.cpp [16/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_angles.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_angles.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_angles.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarcomp_angles.cpp [17/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_replicas.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_replicas.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_replicas.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarproxy_replicas.cpp [18/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_volmaps.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_volmaps.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_volmaps.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarproxy_volmaps.cpp [19/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_system.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_system.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_system.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarproxy_system.cpp [20/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_rotations.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_rotations.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_rotations.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarcomp_rotations.cpp [21/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_combination.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_combination.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_combination.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarcomp_combination.cpp [22/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_alb.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_alb.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_alb.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarbias_alb.cpp [23/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_tcl.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_tcl.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_tcl.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarproxy_tcl.cpp [24/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar_neuralnetworkcompute.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar_neuralnetworkcompute.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar_neuralnetworkcompute.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvar_neuralnetworkcompute.cpp [25/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvars_memstream.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvars_memstream.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvars_memstream.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvars_memstream.cpp [26/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvardeps.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvardeps.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvardeps.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvardeps.cpp [27/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarbias_histogram.cpp [28/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_neuralnetwork.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_neuralnetwork.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_neuralnetwork.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarcomp_neuralnetwork.cpp [29/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_protein.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_protein.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_protein.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarcomp_protein.cpp [30/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid_integrate.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid_integrate.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid_integrate.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvargrid_integrate.cpp [31/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram_reweight_amd.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram_reweight_amd.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram_reweight_amd.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarbias_histogram_reweight_amd.cpp [32/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_coordnums.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_coordnums.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_coordnums.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarcomp_coordnums.cpp [33/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/nr_jacobi.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/nr_jacobi.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/nr_jacobi.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/nr_jacobi.cpp [34/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -DGMX_DESCRIBE_BLAS="External - user-supplied" -DGMX_DESCRIBE_LAPACK="External - user-supplied" -DGMX_FFT_MKL=0 -MD -MT src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/binary_information.cpp.o -MF src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/binary_information.cpp.o.d -o src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/binary_information.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/binary_information.cpp [35/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o -MF src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o.d -o src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/sparsematrix.cpp [36/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_io.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_io.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_io.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarproxy_io.cpp [37/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/fmm/CMakeFiles/fmm.dir/fmmforceprovider_stub.cpp.o -MF src/gromacs/fmm/CMakeFiles/fmm.dir/fmmforceprovider_stub.cpp.o.d -o src/gromacs/fmm/CMakeFiles/fmm.dir/fmmforceprovider_stub.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fmm/fmmforceprovider_stub.cpp [38/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarproxy.cpp [39/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/eigensolver.cpp.o -MF src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/eigensolver.cpp.o.d -o src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/eigensolver.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/eigensolver.cpp [40/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_bias.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_bias.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_bias.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarscript_commands_bias.cpp [41/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarcomp.cpp [42/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/matrix.cpp.o -MF src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/matrix.cpp.o.d -o src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/matrix.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/matrix.cpp [43/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/options/CMakeFiles/options.dir/behaviorcollection.cpp.o -MF src/gromacs/options/CMakeFiles/options.dir/behaviorcollection.cpp.o.d -o src/gromacs/options/CMakeFiles/options.dir/behaviorcollection.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/options/behaviorcollection.cpp [44/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/options/CMakeFiles/options.dir/abstractsection.cpp.o -MF src/gromacs/options/CMakeFiles/options.dir/abstractsection.cpp.o.d -o src/gromacs/options/CMakeFiles/options.dir/abstractsection.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/options/abstractsection.cpp [45/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/fmm/CMakeFiles/fmm.dir/fmm_mdpvalidator.cpp.o -MF src/gromacs/fmm/CMakeFiles/fmm.dir/fmm_mdpvalidator.cpp.o.d -o src/gromacs/fmm/CMakeFiles/fmm.dir/fmm_mdpvalidator.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fmm/fmm_mdpvalidator.cpp [46/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_colvar.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_colvar.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_colvar.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarscript_commands_colvar.cpp [47/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/fmm/CMakeFiles/fmm.dir/fmmforceproviderbuilder.cpp.o -MF src/gromacs/fmm/CMakeFiles/fmm.dir/fmmforceproviderbuilder.cpp.o.d -o src/gromacs/fmm/CMakeFiles/fmm.dir/fmmforceproviderbuilder.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fmm/fmmforceproviderbuilder.cpp [48/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarscript_commands.cpp [49/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/options/CMakeFiles/options.dir/optionsection.cpp.o -MF src/gromacs/options/CMakeFiles/options.dir/optionsection.cpp.o.d -o src/gromacs/options/CMakeFiles/options.dir/optionsection.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/options/optionsection.cpp [50/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_apath.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_apath.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_apath.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarcomp_apath.cpp [51/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/fmm/CMakeFiles/fmm.dir/fmm_mdmodule.cpp.o -MF src/gromacs/fmm/CMakeFiles/fmm.dir/fmm_mdmodule.cpp.o.d -o src/gromacs/fmm/CMakeFiles/fmm.dir/fmm_mdmodule.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fmm/fmm_mdmodule.cpp [52/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_restraint.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_restraint.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_restraint.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarbias_restraint.cpp [53/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/options/CMakeFiles/options.dir/optionsvisitor.cpp.o -MF src/gromacs/options/CMakeFiles/options.dir/optionsvisitor.cpp.o.d -o src/gromacs/options/CMakeFiles/options.dir/optionsvisitor.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/options/optionsvisitor.cpp [54/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/fmm/CMakeFiles/fmm.dir/fmm_mdpoptions.cpp.o -MF src/gromacs/fmm/CMakeFiles/fmm.dir/fmm_mdpoptions.cpp.o.d -o src/gromacs/fmm/CMakeFiles/fmm.dir/fmm_mdpoptions.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fmm/fmm_mdpoptions.cpp [55/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_distances.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_distances.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_distances.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarcomp_distances.cpp [56/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarbias.cpp [57/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvaratoms.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvaratoms.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvaratoms.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvaratoms.cpp [58/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/options/CMakeFiles/options.dir/optionsassigner.cpp.o -MF src/gromacs/options/CMakeFiles/options.dir/optionsassigner.cpp.o.d -o src/gromacs/options/CMakeFiles/options.dir/optionsassigner.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/options/optionsassigner.cpp [59/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/options/CMakeFiles/options.dir/filenameoptionmanager.cpp.o -MF src/gromacs/options/CMakeFiles/options.dir/filenameoptionmanager.cpp.o.d -o src/gromacs/options/CMakeFiles/options.dir/filenameoptionmanager.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/options/filenameoptionmanager.cpp [60/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/options/CMakeFiles/options.dir/timeunitmanager.cpp.o -MF src/gromacs/options/CMakeFiles/options.dir/timeunitmanager.cpp.o.d -o src/gromacs/options/CMakeFiles/options.dir/timeunitmanager.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/options/timeunitmanager.cpp [61/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarvalue.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarvalue.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarvalue.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarvalue.cpp [62/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvartypes.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvartypes.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvartypes.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvartypes.cpp [63/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/reportgpuusage.cpp.o -MF src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/reportgpuusage.cpp.o.d -o src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/reportgpuusage.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/reportgpuusage.cpp [64/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/options/CMakeFiles/options.dir/options.cpp.o -MF src/gromacs/options/CMakeFiles/options.dir/options.cpp.o.d -o src/gromacs/options/CMakeFiles/options.dir/options.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/options/options.cpp [65/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/findallgputasks.cpp.o -MF src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/findallgputasks.cpp.o.d -o src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/findallgputasks.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/findallgputasks.cpp [66/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/decidesimulationworkload.cpp.o -MF src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/decidesimulationworkload.cpp.o.d -o src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/decidesimulationworkload.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/decidesimulationworkload.cpp [67/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/options/CMakeFiles/options.dir/abstractoption.cpp.o -MF src/gromacs/options/CMakeFiles/options.dir/abstractoption.cpp.o.d -o src/gromacs/options/CMakeFiles/options.dir/abstractoption.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/options/abstractoption.cpp [68/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o -MF src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o.d -o src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/gmx_arpack.cpp [69/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/fmm/CMakeFiles/fmm.dir/fmmoptions.cpp.o -MF src/gromacs/fmm/CMakeFiles/fmm.dir/fmmoptions.cpp.o.d -o src/gromacs/fmm/CMakeFiles/fmm.dir/fmmoptions.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fmm/fmmoptions.cpp [70/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/usergpuids.cpp.o -MF src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/usergpuids.cpp.o.d -o src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/usergpuids.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/usergpuids.cpp [71/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvargrid.cpp [72/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/pullcoordexpressionparser.cpp.o -MF src/gromacs/pulling/CMakeFiles/pulling.dir/pullcoordexpressionparser.cpp.o.d -o src/gromacs/pulling/CMakeFiles/pulling.dir/pullcoordexpressionparser.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/pullcoordexpressionparser.cpp [73/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_gpath.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_gpath.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_gpath.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarcomp_gpath.cpp [74/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/compositesimulatorelement.cpp [75/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/transformationcoordinate.cpp.o -MF src/gromacs/pulling/CMakeFiles/pulling.dir/transformationcoordinate.cpp.o.d -o src/gromacs/pulling/CMakeFiles/pulling.dir/transformationcoordinate.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/transformationcoordinate.cpp [76/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/resourcedivision.cpp.o -MF src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/resourcedivision.cpp.o.d -o src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/resourcedivision.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/resourcedivision.cpp [77/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarscript.cpp [78/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/decidegpuusage.cpp.o -MF src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/decidegpuusage.cpp.o.d -o src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/decidegpuusage.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/decidegpuusage.cpp [79/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparse.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparse.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparse.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarparse.cpp [80/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/taskassignment.cpp.o -MF src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/taskassignment.cpp.o.d -o src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/taskassignment.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/taskassignment.cpp [81/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/options/CMakeFiles/options.dir/filenameoption.cpp.o -MF src/gromacs/options/CMakeFiles/options.dir/filenameoption.cpp.o.d -o src/gromacs/options/CMakeFiles/options.dir/filenameoption.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/options/filenameoption.cpp [82/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/options/CMakeFiles/options.dir/treesupport.cpp.o -MF src/gromacs/options/CMakeFiles/options.dir/treesupport.cpp.o.d -o src/gromacs/options/CMakeFiles/options.dir/treesupport.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/options/treesupport.cpp [83/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/domdechelper.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/domdechelper.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/domdechelper.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/domdechelper.cpp [84/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/output.cpp.o -MF src/gromacs/pulling/CMakeFiles/pulling.dir/output.cpp.o.d -o src/gromacs/pulling/CMakeFiles/pulling.dir/output.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/output.cpp [85/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/checkpointhelper.cpp [86/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/pullutil.cpp.o -MF src/gromacs/pulling/CMakeFiles/pulling.dir/pullutil.cpp.o.d -o src/gromacs/pulling/CMakeFiles/pulling.dir/pullutil.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/pullutil.cpp [87/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/referencetemperaturemanager.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/referencetemperaturemanager.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/referencetemperaturemanager.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/referencetemperaturemanager.cpp [88/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abf.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abf.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abf.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarbias_abf.cpp [89/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_meta.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_meta.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_meta.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarbias_meta.cpp [90/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/pmeloadbalancehelper.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/pmeloadbalancehelper.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/pmeloadbalancehelper.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/pmeloadbalancehelper.cpp [91/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_opes.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_opes.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_opes.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarbias_opes.cpp [92/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/topologyholder.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/topologyholder.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/topologyholder.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/topologyholder.cpp [93/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/andersentemperaturecoupling.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/andersentemperaturecoupling.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/andersentemperaturecoupling.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/andersentemperaturecoupling.cpp [94/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/signallers.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/signallers.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/signallers.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/signallers.cpp [95/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -Wno-null-conversion -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/selection/CMakeFiles/scanner.dir/scanner.cpp.o -MF src/gromacs/selection/CMakeFiles/scanner.dir/scanner.cpp.o.d -o src/gromacs/selection/CMakeFiles/scanner.dir/scanner.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/scanner.cpp [96/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/energyterm.cpp.o -MF src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/energyterm.cpp.o.d -o src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/energyterm.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/energyanalysis/energyterm.cpp [97/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/constraintelement.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/constraintelement.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/constraintelement.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/constraintelement.cpp [98/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/fileio/h5md/CMakeFiles/h5md.dir/h5md.cpp.o -MF src/gromacs/fileio/h5md/CMakeFiles/h5md.dir/h5md.cpp.o.d -o src/gromacs/fileio/h5md/CMakeFiles/h5md.dir/h5md.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/h5md/h5md.cpp [99/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/programs/CMakeFiles/gmx_objlib.dir/gmx.cpp.o -MF src/programs/CMakeFiles/gmx_objlib.dir/gmx.cpp.o.d -o src/programs/CMakeFiles/gmx_objlib.dir/gmx.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/programs/gmx.cpp [100/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/trajectoryelement.cpp [101/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/expandedensembleelement.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/expandedensembleelement.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/expandedensembleelement.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/expandedensembleelement.cpp [102/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/computeglobalselement.cpp [103/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/programs/CMakeFiles/gmx_objlib.dir/legacymodules.cpp.o -MF src/programs/CMakeFiles/gmx_objlib.dir/legacymodules.cpp.o.d -o src/programs/CMakeFiles/gmx_objlib.dir/legacymodules.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/programs/legacymodules.cpp [104/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/freeenergyperturbationdata.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/freeenergyperturbationdata.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/freeenergyperturbationdata.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/freeenergyperturbationdata.cpp [105/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/forceelement.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/forceelement.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/forceelement.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/forceelement.cpp [106/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarmodule.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarmodule.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarmodule.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvarmodule.cpp [107/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/firstorderpressurecoupling.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/firstorderpressurecoupling.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/firstorderpressurecoupling.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/firstorderpressurecoupling.cpp [108/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/energydata.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/energydata.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/energydata.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/energydata.cpp [109/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/pull.cpp.o -MF src/gromacs/pulling/CMakeFiles/pulling.dir/pull.cpp.o.d -o src/gromacs/pulling/CMakeFiles/pulling.dir/pull.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/pull.cpp [110/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -MF src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o.d -o src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/programs/mdrun/mdrun.cpp [111/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -MF src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o.d -o src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/programs/mdrun/nonbonded_bench.cpp [112/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/pull_rotation.cpp.o -MF src/gromacs/pulling/CMakeFiles/pulling.dir/pull_rotation.cpp.o.d -o src/gromacs/pulling/CMakeFiles/pulling.dir/pull_rotation.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/pull_rotation.cpp [113/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar.cpp.o -MF src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar.cpp.o.d -o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars/colvar.cpp [114/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/pullelement.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/pullelement.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/pullelement.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/pullelement.cpp [115/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/parrinellorahmanbarostat.cpp [116/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/mttk.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/mttk.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/mttk.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/mttk.cpp [117/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/nosehooverchains.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/nosehooverchains.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/nosehooverchains.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/nosehooverchains.cpp [118/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/velocityscalingtemperaturecoupling.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/velocityscalingtemperaturecoupling.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/velocityscalingtemperaturecoupling.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/velocityscalingtemperaturecoupling.cpp [119/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/modularsimulator.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/modularsimulator.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/modularsimulator.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/modularsimulator.cpp [120/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -Wno-null-conversion -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/selection/CMakeFiles/scanner.dir/parser.cpp.o -MF src/gromacs/selection/CMakeFiles/scanner.dir/parser.cpp.o.d -o src/gromacs/selection/CMakeFiles/scanner.dir/parser.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/parser.cpp [121/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/statepropagatordata.cpp [122/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/options/CMakeFiles/options.dir/basicoptions.cpp.o -MF src/gromacs/options/CMakeFiles/options.dir/basicoptions.cpp.o.d -o src/gromacs/options/CMakeFiles/options.dir/basicoptions.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/options/basicoptions.cpp [123/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/simulatoralgorithm.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/simulatoralgorithm.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/simulatoralgorithm.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/simulatoralgorithm.cpp [124/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/propagator.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/propagator.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/propagator.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/propagator.cpp [125/944] cd /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/cmake -D VERSION_VARIABLES=/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/VersionInfo.cmake -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/baseversion-gen.cpp.cmakein -D VERSION_OUT=utility/baseversion-gen.cpp -D GMX_SOURCE_DOI= -D GMX_RELEASE_HASH= -D GMX_SOURCE_HASH= -P /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/cmake/gmxConfigureVersionInfo.cmake && /usr/bin/cmake -E touch utility/baseversion-gen.cpp [126/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/errorcodes.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/errorcodes.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/errorcodes.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/errorcodes.cpp [127/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/alignedallocator.cpp [128/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/physicalnodecommunicator.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/physicalnodecommunicator.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/physicalnodecommunicator.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/physicalnodecommunicator.cpp [129/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/booltype.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/booltype.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/booltype.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/booltype.cpp [130/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/logger.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/logger.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/logger.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/logger.cpp [131/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxassert.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxassert.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxassert.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/gmxassert.cpp [132/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/compare.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/compare.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/compare.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/compare.cpp [133/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/int64_to_int.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/int64_to_int.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/int64_to_int.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/int64_to_int.cpp [134/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/any.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/any.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/any.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/any.cpp [135/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/baseversion.cpp [136/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/init.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/init.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/init.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/init.cpp [137/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/basenetwork.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/basenetwork.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/basenetwork.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/basenetwork.cpp [138/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/ikeyvaluetreeerror.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/ikeyvaluetreeerror.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/ikeyvaluetreeerror.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/ikeyvaluetreeerror.cpp [139/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/fileredirector.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/fileredirector.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/fileredirector.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/fileredirector.cpp [140/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/niceheader.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/niceheader.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/niceheader.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/niceheader.cpp [141/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/pleasecite.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/pleasecite.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/pleasecite.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/pleasecite.cpp [142/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/errorformat.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/errorformat.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/errorformat.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/errorformat.cpp [143/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/message_string_collector.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/message_string_collector.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/message_string_collector.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/message_string_collector.cpp [144/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxomp.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxomp.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxomp.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/gmxomp.cpp [145/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/coolstuff.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/coolstuff.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/coolstuff.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/coolstuff.cpp [146/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/cstringutil.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/cstringutil.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/cstringutil.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/cstringutil.cpp [147/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/sysinfo.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/sysinfo.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/sysinfo.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/sysinfo.cpp [148/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/programcontext.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/programcontext.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/programcontext.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/programcontext.cpp [149/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/fatalerror.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/fatalerror.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/fatalerror.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/fatalerror.cpp [150/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreemdpwriter.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreemdpwriter.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreemdpwriter.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/keyvaluetreemdpwriter.cpp [151/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/smalloc.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/smalloc.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/smalloc.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/smalloc.cpp [152/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/veccompare.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/veccompare.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/veccompare.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/veccompare.cpp [153/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/stringstream.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/stringstream.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/stringstream.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/stringstream.cpp [154/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/filestream.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/filestream.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/filestream.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/filestream.cpp [155/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/loggerbuilder.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/loggerbuilder.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/loggerbuilder.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/loggerbuilder.cpp [156/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/mpicomm.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/mpicomm.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/mpicomm.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/mpicomm.cpp [157/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/strconvert.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/strconvert.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/strconvert.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/strconvert.cpp [158/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/strdb.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/strdb.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/strdb.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/strdb.cpp [159/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/txtdump.cpp [160/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/path.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/path.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/path.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/path.cpp [161/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/textreader.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/textreader.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/textreader.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/textreader.cpp [162/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/vecdump.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/vecdump.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/vecdump.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/vecdump.cpp [163/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/futil.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/futil.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/futil.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/futil.cpp [164/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetree.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetree.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetree.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/keyvaluetree.cpp [165/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/textwriter.cpp [166/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/directoryenumerator.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/directoryenumerator.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/directoryenumerator.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/directoryenumerator.cpp [167/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/stringutil.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/stringutil.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/stringutil.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/stringutil.cpp [168/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/datafilefinder.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/datafilefinder.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/datafilefinder.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/datafilefinder.cpp [169/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/exceptions.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/exceptions.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/exceptions.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/exceptions.cpp [170/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreetransform.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreetransform.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreetransform.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/keyvaluetreetransform.cpp [171/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp [172/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp [173/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_F.cpp [174/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp [175/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp [176/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_F.cpp [177/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp [178/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp [179/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp [180/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp [181/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp [182/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp [183/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp [184/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp [185/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VF.cpp [186/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp [187/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp [188/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp [189/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp [190/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp [191/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VF.cpp [192/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp [193/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp [194/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp [195/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp [196/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp [197/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp [198/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp [199/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp [200/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp [201/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp [202/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/mpiinfo.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/mpiinfo.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/mpiinfo.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/mpiinfo.cpp [203/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_F.cpp [204/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp [205/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp [206/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp [207/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp [208/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp [209/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp [210/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp [211/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VgrpF.cpp [212/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp [213/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp [214/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp [215/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp [216/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp [217/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp [218/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp [219/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp [220/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp [221/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp [222/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp [223/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp [224/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp [225/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp [226/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp [227/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp [228/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp [229/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp [230/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp [231/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp [232/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp [233/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp [234/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp [235/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp [236/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp [237/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp [238/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp [239/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VF.cpp [240/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp [241/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp [242/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp [243/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VF.cpp [244/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp [245/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp [246/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp [247/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp [248/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp [249/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp [250/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp [251/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp [252/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp [253/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp [254/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp [255/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VF.cpp [256/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp [257/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp [258/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp [259/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp [260/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp [261/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp [262/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp [263/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp [264/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp [265/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp [266/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp [267/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp [268/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_F.cpp [269/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp [270/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp [271/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp [272/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_F.cpp [273/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VF.cpp [274/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp [275/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp [276/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_F.cpp [277/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VF.cpp [278/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp [279/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp [280/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp [281/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp [282/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp [283/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp [284/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp [285/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_F.cpp [286/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VF.cpp [287/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp [288/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp [289/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_F.cpp [290/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VF.cpp [291/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp [292/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_F.cpp [293/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VgrpF.cpp [294/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VF.cpp [295/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp [296/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp [297/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp [298/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp [299/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp [300/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp [301/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp [302/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp [303/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp [304/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp [305/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp [306/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp [307/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp [308/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp [309/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp [310/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp [311/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp [312/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp [313/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp [314/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp [315/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp [316/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp [317/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp [318/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp [319/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_F.cpp [320/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp [321/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp [322/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp [323/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp [324/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp [325/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_F.cpp [326/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp [327/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_F.cpp [328/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VF.cpp [329/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VF.cpp [330/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp [331/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_F.cpp [332/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VF.cpp [333/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp [334/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_F.cpp [335/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VF.cpp [336/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp [337/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_F.cpp [338/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VF.cpp [339/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp [340/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp [341/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp [342/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp [343/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_F.cpp [344/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VF.cpp [345/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp [346/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_F.cpp [347/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VF.cpp [348/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp [349/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_F.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_F.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_F.cpp [350/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VF.cpp [351/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernel_common.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernel_common.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernel_common.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernel_common.cpp [352/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VgrpF.cpp [353/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodule.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodule.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodule.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/commandline/cmdlinemodule.cpp [354/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistsets.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistsets.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistsets.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/pairlistsets.cpp [355/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/exclusionchecker.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/exclusionchecker.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/exclusionchecker.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/exclusionchecker.cpp [356/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_geometry.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_geometry.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_geometry.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/nbnxm_geometry.cpp [357/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/commandline/cmdlinehelpcontext.cpp [358/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodulesettings.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodulesettings.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodulesettings.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/commandline/cmdlinemodulesettings.cpp [359/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistparams.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistparams.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistparams.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/pairlistparams.cpp [360/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_gpu_ref.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_gpu_ref.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_gpu_ref.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_reference/kernel_gpu_ref.cpp [361/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/freeenergydispatch.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/freeenergydispatch.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/freeenergydispatch.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/freeenergydispatch.cpp [362/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistwork.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistwork.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistwork.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/pairlistwork.cpp [363/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineinit.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineinit.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineinit.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/commandline/cmdlineinit.cpp [364/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_system.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_system.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_system.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/benchmark/bench_system.cpp [365/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/gridset.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/gridset.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/gridset.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/gridset.cpp [366/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/nbnxm.cpp [367/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_prune.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_prune.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_prune.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_reference/kernel_ref_prune.cpp [368/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairsearch.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairsearch.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairsearch.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/pairsearch.cpp [369/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist_simd_kernel.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist_simd_kernel.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist_simd_kernel.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/pairlist_simd_kernel.cpp [370/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/simd_prune_kernel.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/simd_prune_kernel.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/simd_prune_kernel.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/simd_prune_kernel.cpp [371/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/simd_energy_accumulator.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/simd_energy_accumulator.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/simd_energy_accumulator.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/simd_energy_accumulator.cpp [372/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistset.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistset.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistset.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/pairlistset.cpp [373/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/prunekerneldispatch.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/prunekerneldispatch.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/prunekerneldispatch.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/prunekerneldispatch.cpp [374/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kerneldispatch.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kerneldispatch.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kerneldispatch.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kerneldispatch.cpp [375/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/commandline/cmdlineparser.cpp [376/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineoptionsmodule.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineoptionsmodule.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineoptionsmodule.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/commandline/cmdlineoptionsmodule.cpp [377/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/viewit.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/commandline/viewit.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/commandline/viewit.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/commandline/viewit.cpp [378/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/filenm.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/commandline/filenm.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/commandline/filenm.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/commandline/filenm.cpp [379/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpwriter.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpwriter.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpwriter.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/commandline/cmdlinehelpwriter.cpp [380/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/atomdistribution.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/atomdistribution.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/atomdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/atomdistribution.cpp [381/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/dlbtiming.cpp [382/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_setup.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_setup.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_setup.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/benchmark/bench_setup.cpp [383/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlb.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlb.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlb.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/dlb.cpp [384/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist_tuning.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist_tuning.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist_tuning.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/pairlist_tuning.cpp [385/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/commandline/cmdlineprogramcontext.cpp [386/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/shellcompletions.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/commandline/shellcompletions.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/commandline/shellcompletions.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/commandline/shellcompletions.cpp [387/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/domdec_network.cpp [388/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/box.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/box.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/box.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/box.cpp [389/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/grid.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/grid.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/grid.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/grid.cpp [390/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomset.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomset.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomset.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/localatomset.cpp [391/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/ga2la.cpp [392/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/computemultibodycutoffs.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/computemultibodycutoffs.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/computemultibodycutoffs.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/computemultibodycutoffs.cpp [393/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodulemanager.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodulemanager.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodulemanager.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/commandline/cmdlinemodulemanager.cpp [394/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/collect.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/collect.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/collect.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/collect.cpp [395/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_setup.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_setup.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_setup.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/nbnxm_setup.cpp [396/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetdata.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetdata.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetdata.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/localatomsetdata.cpp [397/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/commandline/cmdlinehelpmodule.cpp [398/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetmanager.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetmanager.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetmanager.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/localatomsetmanager.cpp [399/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/domdec_vsite.cpp [400/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_zones.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_zones.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_zones.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/domdec_zones.cpp [401/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/pargs.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/commandline/pargs.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/commandline/pargs.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/commandline/pargs.cpp [402/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/cellsizes.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/cellsizes.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/cellsizes.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/cellsizes.cpp [403/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/gpuhaloexchange_impl.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/gpuhaloexchange_impl.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/gpuhaloexchange_impl.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/gpuhaloexchange_impl.cpp [404/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/nsgrid.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/nsgrid.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/nsgrid.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/nsgrid.cpp [405/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/functions.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/math/functions.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/math/functions.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/functions.cpp [406/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/dump.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/dump.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/dump.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/dump.cpp [407/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/domainpaircomm.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/domainpaircomm.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/domainpaircomm.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/domainpaircomm.cpp [408/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/3dtransforms.cpp [409/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/coordinatetransformation.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/math/coordinatetransformation.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/math/coordinatetransformation.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/coordinatetransformation.cpp [410/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/domdec_specatomcomm.cpp [411/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/atomdata.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/atomdata.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/atomdata.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/atomdata.cpp [412/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/utilities.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/math/utilities.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/math/utilities.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/utilities.cpp [413/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/mdsetup.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/mdsetup.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/mdsetup.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/mdsetup.cpp [414/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/distribute.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/distribute.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/distribute.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/distribute.cpp [415/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/densityfittingforce.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/math/densityfittingforce.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/math/densityfittingforce.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/densityfittingforce.cpp [416/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/optimization.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/math/optimization.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/math/optimization.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/optimization.cpp [417/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/utility.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/utility.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/utility.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/utility.cpp [418/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/do_fit.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/math/do_fit.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/math/do_fit.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/do_fit.cpp [419/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/commrec.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/commrec.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/commrec.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdtypes/commrec.cpp [420/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/domdec_constraints.cpp [421/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/invertmatrix.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/math/invertmatrix.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/math/invertmatrix.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/invertmatrix.cpp [422/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/makebondedlinks.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/makebondedlinks.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/makebondedlinks.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/makebondedlinks.cpp [423/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/domdec_setup.cpp [424/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/densityfit.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/math/densityfit.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/math/densityfit.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/densityfit.cpp [425/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/exponentialmovingaverage.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/math/exponentialmovingaverage.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/math/exponentialmovingaverage.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/exponentialmovingaverage.cpp [426/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/localtopologychecker.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/localtopologychecker.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/localtopologychecker.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/localtopologychecker.cpp [427/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/haloexchange.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/haloexchange.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/haloexchange.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/haloexchange.cpp [428/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/md_enums.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/md_enums.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/md_enums.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdtypes/md_enums.cpp [429/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/haloexchangesetup.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/haloexchangesetup.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/haloexchangesetup.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/haloexchangesetup.cpp [430/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/gausstransform.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/math/gausstransform.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/math/gausstransform.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/gausstransform.cpp [431/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/nrjac.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/math/nrjac.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/math/nrjac.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/nrjac.cpp [432/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/neldermead.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/math/neldermead.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/math/neldermead.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/neldermead.cpp [433/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/iforceprovider.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/iforceprovider.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/iforceprovider.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdtypes/iforceprovider.cpp [434/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/forcebuffers.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/forcebuffers.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/forcebuffers.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdtypes/forcebuffers.cpp [435/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/boxutilities.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/boxutilities.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/boxutilities.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/boxutilities.cpp [436/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/group.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/group.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/group.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdtypes/group.cpp [437/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/observableshistory.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/observableshistory.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/observableshistory.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdtypes/observableshistory.cpp [438/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbcenums.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbcenums.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbcenums.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/pbcenums.cpp [439/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/reversetopology.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/reversetopology.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/reversetopology.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/reversetopology.cpp [440/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/rstparser.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/rstparser.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/rstparser.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/onlinehelp/rstparser.cpp [441/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/onlinehelp/helpmanager.cpp [442/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/observablesreducer.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/observablesreducer.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/observablesreducer.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdtypes/observablesreducer.cpp [443/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/random/tabulatednormaldistribution.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/random/tabulatednormaldistribution.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/random/tabulatednormaldistribution.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/random/tabulatednormaldistribution.cpp [444/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc_simd.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc_simd.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc_simd.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/pbc_simd.cpp [445/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/localtopology.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/localtopology.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/localtopology.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/localtopology.cpp [446/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/redistribute.cpp [447/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/com.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/com.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/com.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/com.cpp [448/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/timing/cyclecounter.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/timing/cyclecounter.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/timing/cyclecounter.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/cyclecounter.cpp [449/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/timing/external_tracing.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/timing/external_tracing.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/timing/external_tracing.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/external_tracing.cpp [450/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/checkpointdata.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/checkpointdata.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/checkpointdata.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdtypes/checkpointdata.cpp [451/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/multipletimestepping.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/multipletimestepping.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/multipletimestepping.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdtypes/multipletimestepping.cpp [452/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/timing/walltime_accounting.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/timing/walltime_accounting.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/timing/walltime_accounting.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/walltime_accounting.cpp [453/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/random/seed.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/random/seed.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/random/seed.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/random/seed.cpp [454/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helptopic.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helptopic.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helptopic.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/onlinehelp/helptopic.cpp [455/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/interaction_const.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/interaction_const.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/interaction_const.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdtypes/interaction_const.cpp [456/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpformat.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpformat.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpformat.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/onlinehelp/helpformat.cpp [457/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/rmpbc.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/rmpbc.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/rmpbc.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/rmpbc.cpp [458/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbcmethods.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbcmethods.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbcmethods.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/pbcmethods.cpp [459/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/df_history.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/df_history.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/df_history.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdtypes/df_history.cpp [460/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/restraint/manager.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/restraint/manager.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/restraint/manager.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/restraint/manager.cpp [461/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/serialization/inmemoryserializer.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/serialization/inmemoryserializer.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/serialization/inmemoryserializer.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/inmemoryserializer.cpp [462/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/energyhistory.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/energyhistory.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/energyhistory.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdtypes/energyhistory.cpp [463/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tables/splineutil.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/tables/splineutil.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/tables/splineutil.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/tables/splineutil.cpp [464/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/forcefieldparameters.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/topology/forcefieldparameters.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/topology/forcefieldparameters.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/forcefieldparameters.cpp [465/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/block.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/topology/block.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/topology/block.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/block.cpp [466/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/ifunc.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/topology/ifunc.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/topology/ifunc.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/ifunc.cpp [467/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/restraint/restraintmdmodule.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/restraint/restraintmdmodule.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/restraint/restraintmdmodule.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/restraint/restraintmdmodule.cpp [468/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/atomsbuilder.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/topology/atomsbuilder.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/topology/atomsbuilder.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/atomsbuilder.cpp [469/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/threaded_force_buffer.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/threaded_force_buffer.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/threaded_force_buffer.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdtypes/threaded_force_buffer.cpp [470/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/awh_history.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/awh_history.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/awh_history.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdtypes/awh_history.cpp [471/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/invblock.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/topology/invblock.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/topology/invblock.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/invblock.cpp [472/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/pbc.cpp [473/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpwritercontext.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpwritercontext.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpwritercontext.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/onlinehelp/helpwritercontext.cpp [474/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/atoms.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/topology/atoms.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/topology/atoms.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/atoms.cpp [475/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/exclusionblocks.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/topology/exclusionblocks.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/topology/exclusionblocks.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/exclusionblocks.cpp [476/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/atomprop.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/topology/atomprop.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/topology/atomprop.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/atomprop.cpp [477/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/inputrec.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/inputrec.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/inputrec.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdtypes/inputrec.cpp [478/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tables/cubicsplinetable.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/tables/cubicsplinetable.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/tables/cubicsplinetable.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/tables/cubicsplinetable.cpp [479/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/pairlist.cpp [480/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/binsearch.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/binsearch.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/binsearch.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/binsearch.cpp [481/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tables/quadraticsplinetable.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/tables/quadraticsplinetable.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/tables/quadraticsplinetable.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/tables/quadraticsplinetable.cpp [482/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/mshift.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/mshift.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/mshift.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/mshift.cpp [483/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/angle_correction.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/angle_correction.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/angle_correction.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/angle_correction.cpp [484/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/idef.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/topology/idef.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/topology/idef.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/idef.cpp [485/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/timing/wallcycle.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/timing/wallcycle.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/timing/wallcycle.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/wallcycle.cpp [486/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/state.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/state.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/state.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdtypes/state.cpp [487/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/dens_filter.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/dens_filter.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/dens_filter.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/dens_filter.cpp [488/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/residuetypes.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/topology/residuetypes.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/topology/residuetypes.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/residuetypes.cpp [489/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/mtop_atomloops.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/topology/mtop_atomloops.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/topology/mtop_atomloops.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/mtop_atomloops.cpp [490/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/serialization/keyvaluetreeserializer.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/serialization/keyvaluetreeserializer.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/serialization/keyvaluetreeserializer.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/keyvaluetreeserializer.cpp [491/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/imd/imdsocket.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/imd/imdsocket.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/imd/imdsocket.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/imd/imdsocket.cpp [492/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectory/energyframe.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectory/energyframe.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectory/energyframe.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectory/energyframe.cpp [493/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectory/trajectoryframe.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectory/trajectoryframe.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectory/trajectoryframe.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectory/trajectoryframe.cpp [494/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mimic/utilities.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mimic/utilities.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mimic/utilities.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mimic/utilities.cpp [495/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tables/forcetable.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/tables/forcetable.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/tables/forcetable.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/tables/forcetable.cpp [496/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/topsort.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/topology/topsort.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/topology/topsort.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/topsort.cpp [497/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/eigio.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/eigio.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/eigio.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/eigio.cpp [498/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/cmat.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/cmat.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/cmat.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/cmat.cpp [499/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mimic/communicator_stub.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mimic/communicator_stub.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mimic/communicator_stub.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mimic/communicator_stub.cpp [500/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/symtab.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/topology/symtab.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/topology/symtab.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/symtab.cpp [501/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/fitahx.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/fitahx.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/fitahx.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/fitahx.cpp [502/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/embedded_system_preprocessing.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/topology/embedded_system_preprocessing.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/topology/embedded_system_preprocessing.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/embedded_system_preprocessing.cpp [503/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/topology.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/topology/topology.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/topology/topology.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/topology.cpp [504/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/dlist.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/dlist.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/dlist.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/dlist.cpp [505/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_angle.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_angle.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_angle.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_angle.cpp [506/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/anadih.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/anadih.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/anadih.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/anadih.cpp [507/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/imd/imd.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/imd/imd.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/imd/imd.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/imd/imd.cpp [508/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/cluster_methods.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/cluster_methods.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/cluster_methods.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/cluster_methods.cpp [509/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/mtop_util.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/topology/mtop_util.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/topology/mtop_util.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/mtop_util.cpp [510/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/domdec.cpp [511/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_bundle.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_bundle.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_bundle.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_bundle.cpp [512/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/index.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/topology/index.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/topology/index.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/index.cpp [513/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dielectric.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dielectric.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dielectric.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_dielectric.cpp [514/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_clustsize.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_clustsize.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_clustsize.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_clustsize.cpp [515/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/partition.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/domdec/partition.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/domdec/partition.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/partition.cpp [516/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_densmap.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_densmap.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_densmap.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_densmap.cpp [517/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_confrms.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_confrms.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_confrms.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_confrms.cpp [518/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_analyze.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_analyze.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_analyze.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_analyze.cpp [519/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_current.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_current.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_current.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_current.cpp [520/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_density.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_density.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_density.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_density.cpp [521/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_awh.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_awh.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_awh.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_awh.cpp [522/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_1x1.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_1x1.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_1x1.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_reference/kernel_ref_1x1.cpp [523/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_densorder.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_densorder.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_densorder.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_densorder.cpp [524/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_covar.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_covar.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_covar.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_covar.cpp [525/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dyecoupl.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dyecoupl.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dyecoupl.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_dyecoupl.cpp [526/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dos.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dos.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dos.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_dos.cpp [527/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_anaeig.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_anaeig.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_anaeig.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_anaeig.cpp [528/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_enemat.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_enemat.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_enemat.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_enemat.cpp [529/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_h2order.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_h2order.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_h2order.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_h2order.cpp [530/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_helix.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_helix.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_helix.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_helix.cpp [531/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_cluster.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_cluster.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_cluster.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_cluster.cpp [532/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_filter.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_filter.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_filter.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_filter.cpp [533/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_lie.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_lie.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_lie.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_lie.cpp [534/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_gyrate.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_gyrate.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_gyrate.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_gyrate.cpp [535/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_bar.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_bar.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_bar.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_bar.cpp [536/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dipoles.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dipoles.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dipoles.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_dipoles.cpp [537/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/essentialdynamics/edsam.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/essentialdynamics/edsam.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/essentialdynamics/edsam.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/essentialdynamics/edsam.cpp [538/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_helixorient.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_helixorient.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_helixorient.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_helixorient.cpp [539/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_make_edi.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_make_edi.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_make_edi.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_make_edi.cpp [540/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_mdmat.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_mdmat.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_mdmat.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_mdmat.cpp [541/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmens.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmens.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmens.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_nmens.cpp [542/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rama.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rama.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rama.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_rama.cpp [543/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_hydorder.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_hydorder.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_hydorder.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_hydorder.cpp [544/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmtraj.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmtraj.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmtraj.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_nmtraj.cpp [545/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_principal.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_principal.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_principal.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_principal.cpp [546/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/swap/swapcoords.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/swap/swapcoords.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/swap/swapcoords.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/swap/swapcoords.cpp [547/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_saxs.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_saxs.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_saxs.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_saxs.cpp [548/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmeig.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmeig.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmeig.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_nmeig.cpp [549/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rotacf.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rotacf.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rotacf.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_rotacf.cpp [550/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_mindist.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_mindist.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_mindist.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_mindist.cpp [551/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sigeps.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sigeps.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sigeps.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_sigeps.cpp [552/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_polystat.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_polystat.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_polystat.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_polystat.cpp [553/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_saltbr.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_saltbr.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_saltbr.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_saltbr.cpp [554/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rotmat.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rotmat.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rotmat.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_rotmat.cpp [555/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_potential.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_potential.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_potential.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_potential.cpp [556/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_disre.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_disre.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_disre.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_disre.cpp [557/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_chi.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_chi.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_chi.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_chi.cpp [558/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sans.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sans.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sans.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_sans.cpp [559/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_order.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_order.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_order.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_order.cpp [560/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rmsf.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rmsf.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rmsf.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_rmsf.cpp [561/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rmsdist.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rmsdist.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rmsdist.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_rmsdist.cpp [562/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_energy.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_energy.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_energy.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_energy.cpp [563/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_wheel.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_wheel.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_wheel.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_wheel.cpp [564/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_spatial.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_spatial.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_spatial.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_spatial.cpp [565/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_spol.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_spol.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_spol.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_spol.cpp [566/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sorient.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sorient.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sorient.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_sorient.cpp [567/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmr.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmr.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmr.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_nmr.cpp [568/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/powerspect.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/powerspect.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/powerspect.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/powerspect.cpp [569/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/princ.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/princ.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/princ.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/princ.cpp [570/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_tcaf.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_tcaf.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_tcaf.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_tcaf.cpp [571/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_velacc.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_velacc.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_velacc.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_velacc.cpp [572/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/thermochemistry.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/thermochemistry.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/thermochemistry.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/thermochemistry.cpp [573/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_trjorder.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_trjorder.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_trjorder.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_trjorder.cpp [574/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/nrama.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/nrama.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/nrama.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/nrama.cpp [575/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/calch.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/calch.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/calch.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/calch.cpp [576/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/pp2shift.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/pp2shift.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/pp2shift.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/pp2shift.cpp [577/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/compute_io.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/compute_io.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/compute_io.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/compute_io.cpp [578/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/hxprops.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/hxprops.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/hxprops.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/hxprops.cpp [579/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_vanhove.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_vanhove.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_vanhove.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_vanhove.cpp [580/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rms.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rms.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rms.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_rms.cpp [581/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/nsfactor.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/nsfactor.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/nsfactor.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/nsfactor.cpp [582/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/add_par.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/add_par.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/add_par.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/add_par.cpp [583/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/sfactor.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/sfactor.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/sfactor.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/sfactor.cpp [584/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sham.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sham.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sham.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_sham.cpp [585/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_bond_atomtype.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_bond_atomtype.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_bond_atomtype.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/gpp_bond_atomtype.cpp [586/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/fflibutil.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/fflibutil.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/fflibutil.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/fflibutil.cpp [587/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_traj.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_traj.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_traj.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_traj.cpp [588/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/makeexclusiondistances.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/makeexclusiondistances.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/makeexclusiondistances.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/makeexclusiondistances.cpp [589/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/convparm.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/convparm.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/convparm.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/convparm.cpp [590/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_maxwell_velocities.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_maxwell_velocities.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_maxwell_velocities.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/gen_maxwell_velocities.cpp [591/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genrestr.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genrestr.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genrestr.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/genrestr.cpp [592/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/hizzie.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/hizzie.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/hizzie.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/hizzie.cpp [593/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_nextnb.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_nextnb.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_nextnb.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/gpp_nextnb.cpp [594/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genconf.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genconf.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genconf.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/genconf.cpp [595/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pgutil.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pgutil.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pgutil.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/pgutil.cpp [596/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/massrepartitioning.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/massrepartitioning.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/massrepartitioning.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/massrepartitioning.cpp [597/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/editconf.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/editconf.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/editconf.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/editconf.cpp [598/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/nm2type.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/nm2type.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/nm2type.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/nm2type.cpp [599/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/hackblock.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/hackblock.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/hackblock.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/hackblock.cpp [600/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/h_db.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/h_db.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/h_db.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/h_db.cpp [601/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genhydro.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genhydro.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genhydro.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/genhydro.cpp [602/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genion.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genion.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genion.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/genion.cpp [603/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_atomtype.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_atomtype.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_atomtype.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/gpp_atomtype.cpp [604/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gmxcpp.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gmxcpp.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gmxcpp.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/gmxcpp.cpp [605/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readrot.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readrot.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readrot.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/readrot.cpp [606/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/tomorse.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/tomorse.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/tomorse.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/tomorse.cpp [607/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/crosscorr.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/crosscorr.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/crosscorr.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/correlationfunctions/crosscorr.cpp [608/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_xpm2ps.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_xpm2ps.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_xpm2ps.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_xpm2ps.cpp [609/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topdirs.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topdirs.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topdirs.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/topdirs.cpp [610/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_wham.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_wham.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_wham.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_wham.cpp [611/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/toputil.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/toputil.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/toputil.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/toputil.cpp [612/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topshake.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topshake.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topshake.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/topshake.cpp [613/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/gmx_lmcurve.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/gmx_lmcurve.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/gmx_lmcurve.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/correlationfunctions/gmx_lmcurve.cpp [614/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datamodule.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datamodule.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datamodule.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/analysisdata/datamodule.cpp [615/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/insert_molecules.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/insert_molecules.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/insert_molecules.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/insert_molecules.cpp [616/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/integrate.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/integrate.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/integrate.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/correlationfunctions/integrate.cpp [617/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/polynomials.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/polynomials.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/polynomials.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/correlationfunctions/polynomials.cpp [618/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_hbond.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_hbond.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_hbond.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxana/gmx_hbond.cpp [619/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/manyautocorrelation.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/manyautocorrelation.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/manyautocorrelation.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/correlationfunctions/manyautocorrelation.cpp [620/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/xlate.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/xlate.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/xlate.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/xlate.cpp [621/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/statistics/statistics.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/statistics/statistics.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/statistics/statistics.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/statistics/statistics.cpp [622/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/dataframe.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/dataframe.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/dataframe.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/analysisdata/dataframe.cpp [623/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/expfit.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/expfit.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/expfit.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/correlationfunctions/expfit.cpp [624/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/specbond.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/specbond.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/specbond.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/specbond.cpp [625/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/dataproxy.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/dataproxy.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/dataproxy.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/analysisdata/dataproxy.cpp [626/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/analysisdata.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/analysisdata.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/analysisdata.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/analysisdata/analysisdata.cpp [627/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/arraydata.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/arraydata.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/arraydata.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/analysisdata/arraydata.cpp [628/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/abstractdata.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/abstractdata.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/abstractdata.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/analysisdata/abstractdata.cpp [629/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/autocorr.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/autocorr.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/autocorr.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/correlationfunctions/autocorr.cpp [630/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/solvate.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/solvate.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/solvate.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/solvate.cpp [631/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/frameaverager.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/frameaverager.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/frameaverager.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/analysisdata/modules/frameaverager.cpp [632/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_ad.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_ad.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_ad.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/gen_ad.cpp [633/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datamodulemanager.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datamodulemanager.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datamodulemanager.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/analysisdata/datamodulemanager.cpp [634/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadaptercontainer.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadaptercontainer.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadaptercontainer.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/coordinateio/outputadaptercontainer.cpp [635/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/average.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/average.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/average.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/analysisdata/modules/average.cpp [636/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/ter_db.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/ter_db.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/ter_db.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/ter_db.cpp [637/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setstarttime.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setstarttime.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setstarttime.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/coordinateio/outputadapters/setstarttime.cpp [638/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/settimestep.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/settimestep.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/settimestep.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/coordinateio/outputadapters/settimestep.cpp [639/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/displacement.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/displacement.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/displacement.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/analysisdata/modules/displacement.cpp /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/analysisdata/modules/displacement.cpp: In member function ‘virtual void gmx::AnalysisDataDisplacementModule::frameFinished(const gmx::AnalysisDataFrameHeader&)’: /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/analysisdata/modules/displacement.cpp:279:13: warning: variable ‘k’ set but not used [-Wunused-but-set-variable=] 279 | int k = 1; | ^ At top level: cc1plus: note: unrecognized command-line option ‘-Wno-cast-function-type-strict’ may have been intended to silence earlier diagnostics cc1plus: note: unrecognized command-line option ‘-Wno-suggest-destructor-override’ may have been intended to silence earlier diagnostics [640/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/x2top.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/x2top.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/x2top.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/x2top.cpp [641/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setprecision.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setprecision.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setprecision.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/coordinateio/outputadapters/setprecision.cpp [642/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setforces.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setforces.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setforces.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/coordinateio/outputadapters/setforces.cpp [643/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setatoms.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setatoms.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setatoms.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/coordinateio/outputadapters/setatoms.cpp [644/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setvelocities.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setvelocities.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setvelocities.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/coordinateio/outputadapters/setvelocities.cpp [645/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/outputselector.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/outputselector.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/outputselector.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/coordinateio/outputadapters/outputselector.cpp [646/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/frameconverters/register.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/frameconverters/register.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/frameconverters/register.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/coordinateio/frameconverters/register.cpp [647/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/resall.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/resall.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/resall.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/resall.cpp [648/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/lifetime.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/lifetime.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/lifetime.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/analysisdata/modules/lifetime.cpp [649/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datastorage.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datastorage.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datastorage.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/analysisdata/datastorage.cpp [650/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/requirements.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/requirements.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/requirements.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/coordinateio/requirements.cpp [651/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules.cpp [652/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/analysissettings.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/analysissettings.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/analysissettings.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/analysissettings.cpp [653/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topio.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topio.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topio.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/topio.cpp [654/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/coordinatefile.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/coordinatefile.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/coordinatefile.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/coordinateio/coordinatefile.cpp [655/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/isotope.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/isotope.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/isotope.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/isotope.cpp [656/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/plot.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/plot.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/plot.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/analysisdata/modules/plot.cpp [657/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/convert_trj.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/convert_trj.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/convert_trj.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/convert_trj.cpp [658/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/cmdlinerunner.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/cmdlinerunner.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/cmdlinerunner.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/cmdlinerunner.cpp [659/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/vsite_parm.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/vsite_parm.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/vsite_parm.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/vsite_parm.cpp [660/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_vsite.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_vsite.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_vsite.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/gen_vsite.cpp [661/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/analysismodule.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/analysismodule.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/analysismodule.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/analysismodule.cpp [662/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/histogram.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/histogram.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/histogram.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/analysisdata/modules/histogram.cpp [663/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/gyrate.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/gyrate.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/gyrate.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/gyrate.cpp [664/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering-debye-sans.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering-debye-sans.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering-debye-sans.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/scattering-debye-sans.cpp [665/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/extract_cluster.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/extract_cluster.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/extract_cluster.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/extract_cluster.cpp [666/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering-debye-saxs.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering-debye-saxs.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering-debye-saxs.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/scattering-debye-saxs.cpp [667/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/distance.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/distance.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/distance.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/distance.cpp [668/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/freevolume.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/freevolume.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/freevolume.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/freevolume.cpp [669/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scatteringfactors.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scatteringfactors.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scatteringfactors.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/scatteringfactors.cpp [670/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2top.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2top.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2top.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/pdb2top.cpp [671/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering-debye.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering-debye.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering-debye.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/scattering-debye.cpp [672/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/pairdist.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/pairdist.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/pairdist.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/pairdist.cpp [673/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/angle.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/angle.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/angle.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/angle.cpp [674/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/trajectory.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/trajectory.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/trajectory.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/trajectory.cpp [675/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/rdf.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/rdf.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/rdf.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/rdf.cpp [676/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/conformation_utilities.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/conformation_utilities.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/conformation_utilities.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxlib/conformation_utilities.cpp [677/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/surfacearea.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/surfacearea.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/surfacearea.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/surfacearea.cpp [678/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_4x4.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_4x4.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_4x4.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/kernels_reference/kernel_ref_4x4.cpp [679/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tools/mk_angndx.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/tools/mk_angndx.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/tools/mk_angndx.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/tools/mk_angndx.cpp [680/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/topologyinformation.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/topologyinformation.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/topologyinformation.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/topologyinformation.cpp [681/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/network.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/network.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/network.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxlib/network.cpp [682/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/runnercommon.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/runnercommon.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/runnercommon.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/runnercommon.cpp [683/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nrnb.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nrnb.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nrnb.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxlib/nrnb.cpp [684/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/checkpointhandler.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/checkpointhandler.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/checkpointhandler.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/checkpointhandler.cpp [685/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/sasa.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/sasa.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/sasa.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/sasa.cpp [686/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calcvir.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calcvir.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calcvir.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/calcvir.cpp [687/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/scattering.cpp [688/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calcmu.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calcmu.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calcmu.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/calcmu.cpp [689/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tools/eneconv.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/tools/eneconv.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/tools/eneconv.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/tools/eneconv.cpp [690/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tools/report_methods.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/tools/report_methods.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/tools/report_methods.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/tools/report_methods.cpp [691/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/boxdeformation.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/boxdeformation.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/boxdeformation.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/boxdeformation.cpp [692/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/broadcaststructs.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/broadcaststructs.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/broadcaststructs.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/broadcaststructs.cpp [693/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tools/dump.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/tools/dump.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/tools/dump.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/tools/dump.cpp [694/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/energydrifttracker.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/energydrifttracker.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/energydrifttracker.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/energydrifttracker.cpp [695/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tools/check.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/tools/check.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/tools/check.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/tools/check.cpp [696/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/msd.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/msd.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/msd.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/msd.cpp [697/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/select.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/select.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/select.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/select.cpp [698/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/expanded_internal.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/expanded_internal.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/expanded_internal.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/expanded_internal.cpp [699/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/ebin.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/ebin.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/ebin.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/ebin.cpp [700/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tools/trjcat.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/tools/trjcat.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/tools/trjcat.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/tools/trjcat.cpp [701/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tools/pme_error.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/tools/pme_error.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/tools/pme_error.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/tools/pme_error.cpp [702/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/dssp.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/dssp.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/dssp.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/dssp.cpp [703/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/lincs_constraint_group_sizes.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/lincs_constraint_group_sizes.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/lincs_constraint_group_sizes.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/lincs_constraint_group_sizes.cpp [704/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/freeenergyparameters.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/freeenergyparameters.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/freeenergyparameters.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/freeenergyparameters.cpp [705/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constraintrange.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constraintrange.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constraintrange.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/constraintrange.cpp [706/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/grompp.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/grompp.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/grompp.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/grompp.cpp [707/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tools/make_ndx.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/tools/make_ndx.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/tools/make_ndx.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/tools/make_ndx.cpp [708/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/gmx_omp_nthreads.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/gmx_omp_nthreads.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/gmx_omp_nthreads.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/gmx_omp_nthreads.cpp [709/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/enerdata_utils.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/enerdata_utils.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/enerdata_utils.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/enerdata_utils.cpp [710/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constraint_gpu_helpers.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constraint_gpu_helpers.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constraint_gpu_helpers.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/constraint_gpu_helpers.cpp [711/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/groupcoord.cpp [712/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdgraph_gpu_impl.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdgraph_gpu_impl.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdgraph_gpu_impl.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/mdgraph_gpu_impl.cpp [713/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tools/trjconv.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/tools/trjconv.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/tools/trjconv.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/tools/trjconv.cpp [714/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tools/convert_tpr.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/tools/convert_tpr.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/tools/convert_tpr.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/tools/convert_tpr.cpp [715/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/dispersioncorrection.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/dispersioncorrection.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/dispersioncorrection.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/dispersioncorrection.cpp [716/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/toppush.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/toppush.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/toppush.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/toppush.cpp [717/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/rbin.cpp [718/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/simulationsignal.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/simulationsignal.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/simulationsignal.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/simulationsignal.cpp [719/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/force.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/force.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/force.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/force.cpp [720/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tools/tune_pme.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/tools/tune_pme.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/tools/tune_pme.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/tools/tune_pme.cpp [721/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sighandler.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sighandler.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sighandler.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/sighandler.cpp [722/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2gmx.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2gmx.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2gmx.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/pdb2gmx.cpp [723/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/tgroup.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/tgroup.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/tgroup.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/tgroup.cpp [724/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rf_util.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rf_util.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rf_util.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/rf_util.cpp [725/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stophandler.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stophandler.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stophandler.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/stophandler.cpp [726/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/resethandler.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/resethandler.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/resethandler.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/resethandler.cpp [727/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/hbond.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/hbond.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/hbond.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/trajectoryanalysis/modules/hbond.cpp [728/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/perf_est.cpp [729/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calc_verletbuf.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calc_verletbuf.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calc_verletbuf.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/calc_verletbuf.cpp [730/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/mdebin_bar.cpp [731/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constr.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constr.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constr.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/constr.cpp [732/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/gpuforcereduction_impl_stubs.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/gpuforcereduction_impl_stubs.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/gpuforcereduction_impl_stubs.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/gpuforcereduction_impl_stubs.cpp [733/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/coupling.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/coupling.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/coupling.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/coupling.cpp [734/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stat.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stat.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stat.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/stat.cpp [735/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readpull.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readpull.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readpull.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/readpull.cpp [736/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/shake.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/shake.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/shake.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/shake.cpp [737/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update_constrain_gpu_impl_stubs.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update_constrain_gpu_impl_stubs.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update_constrain_gpu_impl_stubs.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/update_constrain_gpu_impl_stubs.cpp [738/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/splitter.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/splitter.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/splitter.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/splitter.cpp [739/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdatoms.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdatoms.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdatoms.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/mdatoms.cpp [740/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/md_support.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/md_support.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/md_support.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/md_support.cpp [741/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/expanded.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/expanded.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/expanded.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/expanded.cpp [742/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/mdoutf.cpp [743/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/trajectory_writing.cpp [744/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update_vv.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update_vv.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update_vv.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/update_vv.cpp [745/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wholemoleculetransform.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wholemoleculetransform.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wholemoleculetransform.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/wholemoleculetransform.cpp [746/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/correlationgrid.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/correlationgrid.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/correlationgrid.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/awh/correlationgrid.cpp [747/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/pointstate.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/pointstate.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/pointstate.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/awh/pointstate.cpp [748/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biasparams.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biasparams.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biasparams.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/awh/biasparams.cpp [749/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingoutputprovider.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingoutputprovider.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingoutputprovider.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/densityfitting/densityfittingoutputprovider.cpp [750/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/energyoutput.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/energyoutput.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/energyoutput.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/energyoutput.cpp [751/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/histogramsize.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/histogramsize.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/histogramsize.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/awh/histogramsize.cpp [752/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/wall.cpp [753/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/coordstate.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/coordstate.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/coordstate.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/awh/coordstate.cpp [754/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroupscog.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroupscog.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroupscog.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/updategroupscog.cpp [755/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/correlationtensor.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/correlationtensor.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/correlationtensor.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/awh/correlationtensor.cpp [756/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/correlationhistory.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/correlationhistory.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/correlationhistory.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/awh/correlationhistory.cpp [757/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingparameters.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingparameters.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingparameters.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/densityfitting/densityfittingparameters.cpp [758/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroups.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroups.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroups.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/updategroups.cpp [759/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biassharing.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biassharing.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biassharing.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/awh/biassharing.cpp [760/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vcm.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vcm.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vcm.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/vcm.cpp [761/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingamplitudelookup.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingamplitudelookup.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingamplitudelookup.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/densityfitting/densityfittingamplitudelookup.cpp [762/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/membed.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/membed.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/membed.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/membed.cpp [763/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/settle.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/settle.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/settle.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/settle.cpp [764/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/bias.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/bias.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/bias.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/awh/bias.cpp [765/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biaswriter.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biaswriter.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biaswriter.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/awh/biaswriter.cpp [766/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biasgrid.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biasgrid.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biasgrid.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/awh/biasgrid.cpp [767/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/forcerec.cpp /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/forcerec.cpp: In function ‘std::vector makeLJPmeC6GridCorrectionParameters(int, gmx::ArrayRef, LongRangeVdW)’: /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/forcerec.cpp:181:23: warning: variable ‘k’ set but not used [-Wunused-but-set-variable=] 181 | int k = 0; | ^ At top level: cc1plus: note: unrecognized command-line option ‘-Wno-cast-function-type-strict’ may have been intended to silence earlier diagnostics cc1plus: note: unrecognized command-line option ‘-Wno-suggest-destructor-override’ may have been intended to silence earlier diagnostics [768/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/nnpot/binary_information.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/nnpot/binary_information.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/nnpot/binary_information.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/nnpot/binary_information.cpp [769/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/electricfield.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/electricfield.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/electricfield.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/electricfield.cpp [770/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readir.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readir.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readir.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/readir.cpp [771/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarssimulationsparameters.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarssimulationsparameters.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarssimulationsparameters.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/colvars/colvarssimulationsparameters.cpp [772/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmforceprovider_stub.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmforceprovider_stub.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmforceprovider_stub.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/qmmm/qmmmforceprovider_stub.cpp [773/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/plumed/plumedOptions.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/plumed/plumedOptions.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/plumed/plumedOptions.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/plumed/plumedOptions.cpp [774/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/lincs.cpp /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/lincs.cpp: In function ‘void gmx::lincs_update_atoms(Lincs*, int, real, ArrayRef, ArrayRef >, ArrayRef, real (*)[3])’: /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/lincs.cpp:513:19: warning: ‘master’ construct deprecated since OpenMP 5.1, use ‘masked’ [-Wdeprecated-openmp] 513 | #pragma omp master | ^ /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/lincs.cpp: In function ‘void gmx::do_lincs(ArrayRefWithPadding >, ArrayRefWithPadding >, const real (*)[3], t_pbc*, Lincs*, int, ArrayRef, gmx_domdec_t*, bool, real, bool*, real, ArrayRef >, bool, real (*)[3], gmx_wallcycle*)’: /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/lincs.cpp:1189:19: warning: ‘master’ construct deprecated since OpenMP 5.1, use ‘masked’ [-Wdeprecated-openmp] 1189 | #pragma omp master | ^ At top level: cc1plus: note: unrecognized command-line option ‘-Wno-cast-function-type-strict’ may have been intended to silence earlier diagnostics cc1plus: note: unrecognized command-line option ‘-Wno-suggest-destructor-override’ may have been intended to silence earlier diagnostics [775/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmforceproviderstate.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmforceproviderstate.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmforceproviderstate.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/qmmm/qmmmforceproviderstate.cpp [776/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/awh.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/awh.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/awh.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/awh/awh.cpp [777/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/listed_internal.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/listed_internal.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/listed_internal.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/listed_forces/listed_internal.cpp [778/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/nnpot/nnpotforceprovider_stub.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/nnpot/nnpotforceprovider_stub.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/nnpot/nnpotforceprovider_stub.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/nnpot/nnpotforceprovider_stub.cpp [779/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarspreprocessor.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarspreprocessor.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarspreprocessor.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/colvars/colvarspreprocessor.cpp [780/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sim_util.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sim_util.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sim_util.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/sim_util.cpp [781/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/listed_forces_gpu_impl.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/listed_forces_gpu_impl.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/listed_forces_gpu_impl.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/listed_forces/listed_forces_gpu_impl.cpp [782/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmminputgenerator.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmminputgenerator.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmminputgenerator.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/qmmm/qmmminputgenerator.cpp [783/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/restcbt.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/restcbt.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/restcbt.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/listed_forces/restcbt.cpp [784/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/read_params.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/read_params.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/read_params.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/awh/read_params.cpp [785/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/update.cpp [786/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfitting.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfitting.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfitting.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/densityfitting/densityfitting.cpp [787/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingforceprovider.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingforceprovider.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingforceprovider.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/densityfitting/densityfittingforceprovider.cpp [788/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/plumed/plumedMDModule.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/plumed/plumedMDModule.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/plumed/plumedMDModule.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/plumed/plumedMDModule.cpp [789/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/disre.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/disre.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/disre.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/listed_forces/disre.cpp [790/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald_utils.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald_utils.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald_utils.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/ewald_utils.cpp [791/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/calculate_spline_moduli.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/calculate_spline_moduli.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/calculate_spline_moduli.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/calculate_spline_moduli.cpp [792/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarproxygromacs.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarproxygromacs.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarproxygromacs.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/colvars/colvarproxygromacs.cpp [793/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/manage_threading.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/manage_threading.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/manage_threading.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/listed_forces/manage_threading.cpp [794/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_program_impl.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_program_impl.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_program_impl.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/pme_gpu_program_impl.cpp [795/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_program.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_program.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_program.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/pme_gpu_program.cpp [796/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/position_restraints.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/position_restraints.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/position_restraints.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/listed_forces/position_restraints.cpp [797/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmm.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmm.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmm.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/qmmm/qmmm.cpp [798/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/long_range_correction.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/long_range_correction.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/long_range_correction.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/long_range_correction.cpp [799/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarsMDModule.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarsMDModule.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarsMDModule.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/colvars/colvarsMDModule.cpp [800/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_pp_comm_gpu_impl.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_pp_comm_gpu_impl.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_pp_comm_gpu_impl.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/pme_pp_comm_gpu_impl.cpp [801/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/ewald.cpp [802/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/nnpot/nnpot.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/nnpot/nnpot.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/nnpot/nnpot.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/nnpot/nnpot.cpp [803/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_spline_work.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_spline_work.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_spline_work.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/pme_spline_work.cpp [804/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fft/binary_information.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fft/binary_information.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fft/binary_information.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fft/binary_information.cpp [805/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gather.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gather.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gather.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/pme_gather.cpp [806/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_force_sender_gpu_impl.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_force_sender_gpu_impl.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_force_sender_gpu_impl.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/pme_force_sender_gpu_impl.cpp [807/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_coordinate_receiver_gpu_impl.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_coordinate_receiver_gpu_impl.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_coordinate_receiver_gpu_impl.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/pme_coordinate_receiver_gpu_impl.cpp [808/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarsforceprovider.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarsforceprovider.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarsforceprovider.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/colvars/colvarsforceprovider.cpp [809/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpueventsynchronizer_helpers.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpueventsynchronizer_helpers.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpueventsynchronizer_helpers.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gpu_utils/gpueventsynchronizer_helpers.cpp [810/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/listed_forces.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/listed_forces.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/listed_forces.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/listed_forces/listed_forces.cpp [811/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/pairs.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/pairs.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/pairs.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/listed_forces/pairs.cpp [812/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vsite.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vsite.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vsite.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/vsite.cpp [813/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/clfftinitializer.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/clfftinitializer.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/clfftinitializer.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gpu_utils/clfftinitializer.cpp [814/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gpu_utils/gpu_utils.cpp [815/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biasstate.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biasstate.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biasstate.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/awh/biasstate.cpp [816/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/device_stream.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/device_stream.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/device_stream.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gpu_utils/device_stream.cpp [817/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/pmalloc.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/pmalloc.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/pmalloc.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gpu_utils/pmalloc.cpp [818/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/binary_information.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/binary_information.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/binary_information.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gpu_utils/binary_information.cpp [819/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/nvshmem_manager.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/nvshmem_manager.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/nvshmem_manager.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gpu_utils/nvshmem_manager.cpp [820/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/device_stream_manager.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/device_stream_manager.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/device_stream_manager.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gpu_utils/device_stream_manager.cpp [821/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/orires.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/orires.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/orires.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/listed_forces/orires.cpp [822/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fft/fft.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fft/fft.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fft/fft.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fft/fft.cpp [823/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/device_context.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/device_context.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/device_context.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gpu_utils/device_context.cpp [824/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fft/calcgrid.cpp [825/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils_impl.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils_impl.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils_impl.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gpu_utils/gpu_utils_impl.cpp [826/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_pp.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_pp.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_pp.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/pme_pp.cpp [827/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/hostallocator.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/hostallocator.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/hostallocator.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gpu_utils/hostallocator.cpp [828/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fft/parallel_3dfft.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fft/parallel_3dfft.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fft/parallel_3dfft.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fft/parallel_3dfft.cpp [829/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/plumed/plumedforceprovider.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/plumed/plumedforceprovider.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/plumed/plumedforceprovider.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/plumed/plumedforceprovider.cpp [830/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fft/fft_fftw3.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fft/fft_fftw3.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fft/fft_fftw3.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fft/fft_fftw3.cpp [831/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_redistribute.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_redistribute.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_redistribute.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/pme_redistribute.cpp [832/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/hardware/identifyavx512fmaunits.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/hardware/identifyavx512fmaunits.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/hardware/identifyavx512fmaunits.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/hardware/identifyavx512fmaunits.cpp [833/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_grid.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_grid.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_grid.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/pme_grid.cpp [834/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingoptions.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingoptions.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingoptions.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/densityfitting/densityfittingoptions.cpp [835/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_load_balancing.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_load_balancing.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_load_balancing.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/pme_load_balancing.cpp [836/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/hardware/device_management.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/hardware/device_management.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/hardware/device_management.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/hardware/device_management.cpp [837/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_spread.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_spread.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_spread.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/pme_spread.cpp [838/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarsoptions.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarsoptions.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarsoptions.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/colvars/colvarsoptions.cpp [839/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fft/fft5d.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fft/fft5d.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fft/fft5d.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fft/fft5d.cpp [840/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/legacymdrunoptions.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrun/legacymdrunoptions.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/legacymdrunoptions.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/legacymdrunoptions.cpp [841/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/legacysimulator.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrun/legacysimulator.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/legacysimulator.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/legacysimulator.cpp [842/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -DGMX_SIMD_ENUM_VALUE="gmx::SimdType::Arm_NeonAsimd" -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/hardware/simd_support.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/hardware/simd_support.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/hardware/simd_support.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/hardware/simd_support.cpp [843/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_solve.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_solve.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_solve.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/pme_solve.cpp [844/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/membedholder.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrun/membedholder.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/membedholder.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/membedholder.cpp [845/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/hardware/device_management_common.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/hardware/device_management_common.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/hardware/device_management_common.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/hardware/device_management_common.cpp [846/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationcontext.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationcontext.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationcontext.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/simulationcontext.cpp [847/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/freeenergy.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/freeenergy.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/freeenergy.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrunutility/freeenergy.cpp [848/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/hardware/printhardware.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/hardware/printhardware.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/hardware/printhardware.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/hardware/printhardware.cpp [849/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion-gen.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion-gen.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion-gen.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/gromacs/utility/baseversion-gen.cpp [850/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationinputhandle.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationinputhandle.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationinputhandle.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/simulationinputhandle.cpp [851/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/print_validation.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/print_validation.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/print_validation.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrunutility/print_validation.cpp [852/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/hardware/detecthardware.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/hardware/detecthardware.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/hardware/detecthardware.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/hardware/detecthardware.cpp [853/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_only.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_only.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_only.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/pme_only.cpp [854/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/printtime.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/printtime.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/printtime.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrunutility/printtime.cpp [855/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/nnpot/nnpotoptions.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/nnpot/nnpotoptions.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/nnpot/nnpotoptions.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/nnpot/nnpotoptions.cpp [856/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/logging.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/logging.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/logging.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrunutility/logging.cpp [857/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/bonded.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/bonded.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/bonded.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/listed_forces/bonded.cpp [858/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationinput.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationinput.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationinput.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/simulationinput.cpp [859/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/state_propagator_data_gpu_impl.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/state_propagator_data_gpu_impl.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/state_propagator_data_gpu_impl.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdtypes/state_propagator_data_gpu_impl.cpp [860/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/mdmodulesnotifiers.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/mdmodulesnotifiers.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/mdmodulesnotifiers.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrunutility/mdmodulesnotifiers.cpp [861/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/plainpairlistranges.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/plainpairlistranges.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/plainpairlistranges.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrunutility/plainpairlistranges.cpp [862/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/binary_information.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrun/binary_information.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/binary_information.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/binary_information.cpp [863/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/md5.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/md5.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/md5.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/md5.cpp [864/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/hardware/cpuinfo.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/hardware/cpuinfo.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/hardware/cpuinfo.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/hardware/cpuinfo.cpp [865/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/replicaexchange.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrun/replicaexchange.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/replicaexchange.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/replicaexchange.cpp [866/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmoptions.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmoptions.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmoptions.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/qmmm/qmmmoptions.cpp [867/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/multisim.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/multisim.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/multisim.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrunutility/multisim.cpp [868/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/filetypes.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/filetypes.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/filetypes.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/filetypes.cpp [869/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/espio.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/espio.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/espio.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/espio.cpp [870/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulatorbuilder.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulatorbuilder.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulatorbuilder.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/simulatorbuilder.cpp [871/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/confio.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/confio.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/confio.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/confio.cpp [872/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/gmxfio.cpp [873/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio_xdr.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio_xdr.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio_xdr.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/gmxfio_xdr.cpp [874/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/mimic.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrun/mimic.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/mimic.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/mimic.cpp [875/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/g96io.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/g96io.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/g96io.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/g96io.cpp [876/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/mrcserializer.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/mrcserializer.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/mrcserializer.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/mrcserializer.cpp [877/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/oenv.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/oenv.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/oenv.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/oenv.cpp [878/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/mrcdensitymapheader.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/mrcdensitymapheader.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/mrcdensitymapheader.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/mrcdensitymapheader.cpp [879/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/libxdrf.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/libxdrf.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/libxdrf.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/libxdrf.cpp [880/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/timecontrol.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/timecontrol.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/timecontrol.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/timecontrol.cpp [881/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/handlerestart.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/handlerestart.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/handlerestart.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrunutility/handlerestart.cpp [882/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/mtxio.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/mtxio.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/mtxio.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/mtxio.cpp [883/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/rerun.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrun/rerun.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/rerun.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/rerun.cpp [884/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/groio.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/groio.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/groio.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/groio.cpp [885/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/mrcdensitymap.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/mrcdensitymap.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/mrcdensitymap.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/mrcdensitymap.cpp [886/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/mdmodules.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrun/mdmodules.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/mdmodules.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/mdmodules.cpp [887/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/threadaffinity.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/threadaffinity.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/threadaffinity.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrunutility/threadaffinity.cpp [888/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/xdrd.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/xdrd.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/xdrd.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/xdrd.cpp [889/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/trrio.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/trrio.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/trrio.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/trrio.cpp [890/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/warninp.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/warninp.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/warninp.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/warninp.cpp [891/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/enxio.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/enxio.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/enxio.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/enxio.cpp [892/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/hardware/hardwaretopology.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/hardware/hardwaretopology.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/hardware/hardwaretopology.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/hardware/hardwaretopology.cpp [893/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/xtcio.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/xtcio.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/xtcio.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/xtcio.cpp [894/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/mempool.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/mempool.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/mempool.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/mempool.cpp [895/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/writeps.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/writeps.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/writeps.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/writeps.cpp [896/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/pme.cpp [897/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/shellfc.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrun/shellfc.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/shellfc.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/shellfc.cpp [898/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/centerofmass.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/centerofmass.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/centerofmass.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/centerofmass.cpp [899/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/position.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/position.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/position.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/position.cpp [900/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/xdr_serializer.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/xdr_serializer.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/xdr_serializer.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/xdr_serializer.cpp [901/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/pdbio.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/pdbio.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/pdbio.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/pdbio.cpp [902/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/selvalue.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/selvalue.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/selvalue.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/selvalue.cpp [903/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/trxio.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/trxio.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/trxio.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/trxio.cpp [904/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/selmethod.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/selmethod.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/selmethod.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/selmethod.cpp [905/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/xvgr.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/xvgr.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/xvgr.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/xvgr.cpp [906/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/tngio.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/tngio.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/tngio.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/tngio.cpp [907/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/evaluate.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/evaluate.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/evaluate.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/evaluate.cpp [908/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/poscalc.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/poscalc.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/poscalc.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/poscalc.cpp [909/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoptionbehavior.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoptionbehavior.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoptionbehavior.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/selectionoptionbehavior.cpp [910/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_distance.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_distance.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_distance.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/sm_distance.cpp [911/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/scanner_internal.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/scanner_internal.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/scanner_internal.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/scanner_internal.cpp [912/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/tpi.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrun/tpi.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/tpi.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/tpi.cpp /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/tpi.cpp: In member function ‘std::pair gmx::TestParticleInsertion::performSingleInsertion(double, int64_t, bool, const gmx::RVec&, t_state*, gmx::MdrunScheduleWorkload*, gmx_wallcycle*, t_nrnb*)’: /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/tpi.cpp:497:85: note: parameter passing for argument of type ‘std::pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 497 | t_nrnb* nrnb) | ^ [913/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_compare.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_compare.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_compare.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/sm_compare.cpp [914/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/nbsearch.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/nbsearch.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/nbsearch.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/nbsearch.cpp [915/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/selection.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/selection.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/selection.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/selection.cpp [916/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoptionmanager.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoptionmanager.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoptionmanager.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/selectionoptionmanager.cpp [917/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/readinp.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/readinp.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/readinp.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/readinp.cpp [918/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_position.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_position.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_position.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/sm_position.cpp [919/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_insolidangle.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_insolidangle.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_insolidangle.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/sm_insolidangle.cpp [920/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/selhelp.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/selhelp.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/selhelp.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/selhelp.cpp [921/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_merge.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_merge.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_merge.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/sm_merge.cpp [922/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/selelem.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/selelem.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/selelem.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/selelem.cpp [923/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/minimize.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrun/minimize.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/minimize.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/minimize.cpp [924/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_permute.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_permute.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_permute.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/sm_permute.cpp [925/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/indexutil.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/indexutil.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/indexutil.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/indexutil.cpp [926/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/md.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrun/md.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/md.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/md.cpp [927/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_same.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_same.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_same.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/sm_same.cpp [928/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoption.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoption.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoption.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/selectionoption.cpp [929/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fopenmp -MD -MT share/template/CMakeFiles/template.dir/template.cpp.o -MF share/template/CMakeFiles/template.dir/template.cpp.o.d -o share/template/CMakeFiles/template.dir/template.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/share/template/template.cpp [930/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/symrec.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/symrec.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/symrec.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/symrec.cpp [931/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_simple.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_simple.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_simple.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/sm_simple.cpp [932/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/parsetree.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/parsetree.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/parsetree.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/parsetree.cpp [933/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/params.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/params.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/params.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/params.cpp [934/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/selectioncollection.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/selectioncollection.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/selectioncollection.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/selectioncollection.cpp [935/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/compiler.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/compiler.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/compiler.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/compiler.cpp [936/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/checkpoint.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/checkpoint.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/checkpoint.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/checkpoint.cpp [937/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/runner.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrun/runner.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/runner.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/runner.cpp [938/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/tpxio.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/tpxio.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/tpxio.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/tpxio.cpp [939/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/matio.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/fileio/matio.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/fileio/matio.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/matio.cpp [940/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_keywords.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_keywords.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_keywords.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/selection/sm_keywords.cpp [941/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/freeenergykernel.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/freeenergykernel.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/freeenergykernel.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/freeenergykernel.cpp [942/944] : && /usr/bin/cmake -E rm -f lib/libgromacs_openmpi_d.a && /usr/bin/ar qc lib/libgromacs_openmpi_d.a src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o src/gromacs/selection/CMakeFiles/scanner.dir/parser.cpp.o src/gromacs/selection/CMakeFiles/scanner.dir/scanner.cpp.o src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr.cpp.o src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr_array.cpp.o src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr_float.cpp.o src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr_stdio.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar_neuralnetworkcompute.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvaratoms.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abf.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abmd.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_alb.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram_reweight_amd.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_meta.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_opes.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_restraint.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_alchlambda.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_angles.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_apath.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_combination.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_coordnums.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_distances.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_gpath.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_neuralnetwork.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_protein.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_rotations.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_torchann.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_volmaps.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvardeps.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid_integrate.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarmodule.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparams.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparse.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_io.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_replicas.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_system.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_tcl.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_volmaps.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvars_memstream.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_bias.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_colvar.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvartypes.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarvalue.cpp.o src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/nr_jacobi.cpp.o src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/energyterm.cpp.o src/gromacs/fmm/CMakeFiles/fmm.dir/fmm_mdmodule.cpp.o src/gromacs/fmm/CMakeFiles/fmm.dir/fmm_mdpoptions.cpp.o src/gromacs/fmm/CMakeFiles/fmm.dir/fmm_mdpvalidator.cpp.o src/gromacs/fmm/CMakeFiles/fmm.dir/fmmforceproviderbuilder.cpp.o src/gromacs/fmm/CMakeFiles/fmm.dir/fmmoptions.cpp.o src/gromacs/fmm/CMakeFiles/fmm.dir/fmmforceprovider_stub.cpp.o src/gromacs/fileio/h5md/CMakeFiles/h5md.dir/h5md.cpp.o src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/binary_information.cpp.o src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/eigensolver.cpp.o src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/matrix.cpp.o src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/andersentemperaturecoupling.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/constraintelement.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/domdechelper.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/energydata.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/expandedensembleelement.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/firstorderpressurecoupling.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/forceelement.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/freeenergyperturbationdata.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/modularsimulator.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/mttk.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/nosehooverchains.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/pmeloadbalancehelper.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/propagator.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/pullelement.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/referencetemperaturemanager.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/signallers.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/simulatoralgorithm.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/topologyholder.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/velocityscalingtemperaturecoupling.cpp.o src/gromacs/options/CMakeFiles/options.dir/abstractoption.cpp.o src/gromacs/options/CMakeFiles/options.dir/abstractsection.cpp.o src/gromacs/options/CMakeFiles/options.dir/basicoptions.cpp.o src/gromacs/options/CMakeFiles/options.dir/behaviorcollection.cpp.o src/gromacs/options/CMakeFiles/options.dir/filenameoption.cpp.o src/gromacs/options/CMakeFiles/options.dir/filenameoptionmanager.cpp.o src/gromacs/options/CMakeFiles/options.dir/options.cpp.o src/gromacs/options/CMakeFiles/options.dir/optionsassigner.cpp.o src/gromacs/options/CMakeFiles/options.dir/optionsection.cpp.o src/gromacs/options/CMakeFiles/options.dir/optionsvisitor.cpp.o src/gromacs/options/CMakeFiles/options.dir/timeunitmanager.cpp.o src/gromacs/options/CMakeFiles/options.dir/treesupport.cpp.o src/gromacs/pulling/CMakeFiles/pulling.dir/output.cpp.o src/gromacs/pulling/CMakeFiles/pulling.dir/pull.cpp.o src/gromacs/pulling/CMakeFiles/pulling.dir/pull_rotation.cpp.o src/gromacs/pulling/CMakeFiles/pulling.dir/pullcoordexpressionparser.cpp.o src/gromacs/pulling/CMakeFiles/pulling.dir/pullutil.cpp.o src/gromacs/pulling/CMakeFiles/pulling.dir/transformationcoordinate.cpp.o src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/decidegpuusage.cpp.o src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/decidesimulationworkload.cpp.o src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/findallgputasks.cpp.o src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/reportgpuusage.cpp.o src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/resourcedivision.cpp.o src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/taskassignment.cpp.o src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/usergpuids.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/any.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/basenetwork.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/booltype.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/compare.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/coolstuff.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/cstringutil.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/datafilefinder.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/directoryenumerator.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/errorcodes.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/errorformat.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/exceptions.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/fatalerror.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/fileredirector.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/filestream.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/futil.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxassert.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxomp.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/ikeyvaluetreeerror.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/init.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/int64_to_int.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetree.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreemdpwriter.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreetransform.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/logger.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/loggerbuilder.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/message_string_collector.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/mpicomm.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/mpiinfo.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/niceheader.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/path.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/physicalnodecommunicator.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/pleasecite.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/programcontext.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/smalloc.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/strconvert.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/strdb.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/stringstream.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/stringutil.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/sysinfo.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/textreader.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/veccompare.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/vecdump.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_F.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/atomdata.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_setup.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_system.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/exclusionchecker.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/freeenergydispatch.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/freeenergykernel.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/grid.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/gridset.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernel_common.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kerneldispatch.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_gpu_ref.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_1x1.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_4x4.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_prune.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_geometry.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_setup.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist_simd_kernel.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist_tuning.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistparams.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistset.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistsets.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistwork.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairsearch.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/prunekerneldispatch.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/simd_energy_accumulator.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/simd_prune_kernel.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpwriter.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineinit.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodule.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodulemanager.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodulesettings.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineoptionsmodule.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/commandline/filenm.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/commandline/pargs.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/commandline/shellcompletions.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/commandline/viewit.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/atomdistribution.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/box.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/cellsizes.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/collect.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/computemultibodycutoffs.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/distribute.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlb.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/domainpaircomm.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_zones.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/dump.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/haloexchange.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/haloexchangesetup.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomset.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetdata.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetmanager.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/localtopology.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/localtopologychecker.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/makebondedlinks.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/mdsetup.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/nsgrid.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/partition.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/reversetopology.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/utility.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/domdec/gpuhaloexchange_impl.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/math/coordinatetransformation.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/math/densityfit.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/math/densityfittingforce.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/math/do_fit.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/math/exponentialmovingaverage.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/math/functions.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/math/gausstransform.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/math/invertmatrix.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/math/neldermead.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/math/nrjac.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/math/optimization.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/math/utilities.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/awh_history.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/checkpointdata.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/commrec.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/df_history.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/energyhistory.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/forcebuffers.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/group.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/iforceprovider.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/inputrec.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/interaction_const.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/md_enums.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/multipletimestepping.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/observableshistory.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/observablesreducer.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/state.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/threaded_force_buffer.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpformat.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helptopic.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpwritercontext.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/rstparser.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/boxutilities.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/com.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/mshift.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc_simd.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbcenums.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbcmethods.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/rmpbc.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/random/seed.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/random/tabulatednormaldistribution.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/restraint/manager.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/restraint/restraintmdmodule.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/serialization/inmemoryserializer.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/serialization/keyvaluetreeserializer.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/tables/cubicsplinetable.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/tables/forcetable.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/tables/quadraticsplinetable.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/tables/splineutil.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/timing/cyclecounter.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/timing/external_tracing.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/timing/wallcycle.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/timing/walltime_accounting.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/topology/atomprop.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/topology/atoms.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/topology/atomsbuilder.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/topology/block.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/topology/embedded_system_preprocessing.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/topology/exclusionblocks.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/topology/forcefieldparameters.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/topology/idef.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/topology/ifunc.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/topology/index.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/topology/invblock.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/topology/mtop_atomloops.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/topology/mtop_util.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/topology/residuetypes.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/topology/symtab.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/topology/topology.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/topology/topsort.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectory/energyframe.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectory/trajectoryframe.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/swap/swapcoords.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/essentialdynamics/edsam.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/imd/imd.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/imd/imdsocket.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mimic/communicator_stub.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mimic/utilities.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/anadih.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/angle_correction.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/binsearch.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/cluster_methods.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/cmat.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/dens_filter.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/dlist.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/eigio.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/fitahx.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_anaeig.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_analyze.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_angle.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_awh.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_bar.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_bundle.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_chi.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_cluster.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_clustsize.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_confrms.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_covar.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_current.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_density.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_densmap.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_densorder.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dielectric.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dipoles.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_disre.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dos.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dyecoupl.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_enemat.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_energy.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_filter.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_gyrate.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_h2order.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_hbond.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_helix.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_helixorient.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_hydorder.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_lie.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_make_edi.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_mdmat.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_mindist.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmeig.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmens.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmr.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmtraj.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_order.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_polystat.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_potential.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_principal.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rama.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rms.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rmsdist.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rmsf.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rotacf.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rotmat.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_saltbr.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sans.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_saxs.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sham.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sigeps.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sorient.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_spatial.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_spol.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_tcaf.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_traj.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_trjorder.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_vanhove.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_velacc.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_wham.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_wheel.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_xpm2ps.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/hxprops.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/nrama.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/nsfactor.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/powerspect.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/pp2shift.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/princ.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/sfactor.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxana/thermochemistry.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/add_par.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/calch.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/compute_io.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/convparm.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/editconf.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/fflibutil.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_ad.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_maxwell_velocities.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_vsite.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genconf.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genhydro.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genion.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genrestr.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gmxcpp.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_atomtype.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_bond_atomtype.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_nextnb.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/grompp.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/h_db.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/hackblock.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/hizzie.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/insert_molecules.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/makeexclusiondistances.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/massrepartitioning.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/nm2type.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2gmx.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2top.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pgutil.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readir.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readpull.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readrot.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/resall.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/solvate.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/specbond.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/ter_db.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/tomorse.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topdirs.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topio.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/toppush.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topshake.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/toputil.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/vsite_parm.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/x2top.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/xlate.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/autocorr.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/crosscorr.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/expfit.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/gmx_lmcurve.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/integrate.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/manyautocorrelation.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/polynomials.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/statistics/statistics.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/abstractdata.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/analysisdata.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/arraydata.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/dataframe.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datamodule.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datamodulemanager.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/dataproxy.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datastorage.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/average.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/displacement.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/frameaverager.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/histogram.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/lifetime.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/plot.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/coordinatefile.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/frameconverters/register.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadaptercontainer.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/outputselector.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setatoms.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setforces.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setprecision.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setstarttime.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/settimestep.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setvelocities.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/requirements.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/analysismodule.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/analysissettings.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/cmdlinerunner.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/angle.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/convert_trj.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/distance.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/dssp.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/extract_cluster.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/freevolume.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/gyrate.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/hbond.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/isotope.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/msd.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/pairdist.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/rdf.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/sasa.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering-debye-sans.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering-debye-saxs.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering-debye.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scatteringfactors.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/select.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/surfacearea.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/trajectory.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/runnercommon.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/topologyinformation.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/tools/check.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/tools/convert_tpr.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/tools/dump.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/tools/eneconv.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/tools/make_ndx.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/tools/mk_angndx.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/tools/pme_error.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/tools/report_methods.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/tools/trjcat.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/tools/trjconv.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/tools/tune_pme.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/conformation_utilities.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/network.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nrnb.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/boxdeformation.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/broadcaststructs.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calc_verletbuf.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calcmu.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calcvir.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/checkpointhandler.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constr.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constraint_gpu_helpers.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constraintrange.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/coupling.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/dispersioncorrection.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/ebin.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/enerdata_utils.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/energydrifttracker.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/energyoutput.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/expanded.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/expanded_internal.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/force.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/freeenergyparameters.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/gmx_omp_nthreads.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/lincs_constraint_group_sizes.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/md_support.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdatoms.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdgraph_gpu_impl.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/membed.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/resethandler.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rf_util.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/settle.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/shake.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sighandler.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sim_util.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/simulationsignal.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/splitter.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stat.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stophandler.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/tgroup.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update_vv.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroups.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroupscog.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vcm.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vsite.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wholemoleculetransform.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/gpuforcereduction_impl_stubs.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update_constrain_gpu_impl_stubs.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/electricfield.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/awh.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/bias.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biasgrid.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biasparams.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biassharing.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biasstate.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biaswriter.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/coordstate.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/correlationgrid.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/correlationhistory.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/correlationtensor.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/histogramsize.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/pointstate.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/read_params.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfitting.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingamplitudelookup.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingforceprovider.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingoptions.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingoutputprovider.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingparameters.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmminputgenerator.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmforceproviderstate.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmoptions.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmm.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmforceprovider_stub.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarsMDModule.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarsoptions.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarspreprocessor.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarssimulationsparameters.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarsforceprovider.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarproxygromacs.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/plumed/plumedforceprovider.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/plumed/plumedOptions.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/plumed/plumedMDModule.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/nnpot/binary_information.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/nnpot/nnpotoptions.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/nnpot/nnpot.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/nnpot/nnpotforceprovider_stub.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/bonded.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/disre.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/listed_forces_gpu_impl.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/listed_forces.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/listed_internal.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/manage_threading.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/orires.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/pairs.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/position_restraints.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/restcbt.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/calculate_spline_moduli.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald_utils.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/long_range_correction.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gather.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_grid.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_load_balancing.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_only.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_pp.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_redistribute.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_solve.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_spline_work.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_spread.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_program.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_program_impl.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_pp_comm_gpu_impl.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_coordinate_receiver_gpu_impl.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_force_sender_gpu_impl.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fft/binary_information.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fft/fft.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fft/fft5d.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fft/parallel_3dfft.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fft/fft_fftw3.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/binary_information.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/clfftinitializer.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/device_stream_manager.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpueventsynchronizer_helpers.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/hostallocator.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/nvshmem_manager.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/device_context.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/device_stream.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils_impl.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/pmalloc.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/hardware/cpuinfo.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/hardware/detecthardware.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/hardware/device_management_common.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/hardware/hardwaretopology.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/hardware/printhardware.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/hardware/identifyavx512fmaunits.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/hardware/simd_support.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/hardware/device_management.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/binary_information.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/legacymdrunoptions.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/legacysimulator.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/md.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/mdmodules.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/membedholder.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/mimic.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/minimize.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/replicaexchange.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/rerun.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/runner.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/shellfc.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationcontext.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationinput.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationinputhandle.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulatorbuilder.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/tpi.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/freeenergy.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/handlerestart.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/logging.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/mdmodulesnotifiers.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/multisim.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/plainpairlistranges.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/print_validation.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/printtime.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/threadaffinity.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/state_propagator_data_gpu_impl.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion-gen.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/checkpoint.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/confio.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/enxio.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/espio.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/filetypes.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/g96io.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio_xdr.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/groio.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/libxdrf.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/matio.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/md5.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/mrcdensitymap.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/mrcdensitymapheader.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/mrcserializer.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/mtxio.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/oenv.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/pdbio.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/readinp.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/timecontrol.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/tngio.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/tpxio.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/trrio.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/trxio.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/warninp.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/writeps.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/xdr_serializer.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/xdrd.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/xtcio.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/fileio/xvgr.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/centerofmass.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/compiler.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/evaluate.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/indexutil.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/mempool.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/nbsearch.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/params.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/parsetree.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/poscalc.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/position.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/scanner_internal.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/selection.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/selectioncollection.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoption.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoptionbehavior.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoptionmanager.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/selelem.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/selhelp.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/selmethod.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/selvalue.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_compare.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_distance.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_insolidangle.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_keywords.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_merge.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_permute.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_position.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_same.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_simple.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/symrec.cpp.o && /usr/bin/ranlib lib/libgromacs_openmpi_d.a && : [943/944] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,--dependency-file=share/template/CMakeFiles/template.dir/link.d share/template/CMakeFiles/template.dir/template.cpp.o -o bin/template -Wl,-rpath,/usr/lib64/openmpi/lib lib/libgromacs_openmpi_d.a /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io /usr/lib64/openmpi/lib/libmpi.so /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl && : [944/944] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,--dependency-file=src/programs/CMakeFiles/gmx.dir/link.d src/programs/CMakeFiles/gmx_objlib.dir/gmx.cpp.o src/programs/CMakeFiles/gmx_objlib.dir/legacymodules.cpp.o src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o bin/gmx_openmpi_d -Wl,-rpath,/usr/lib64/openmpi/lib: lib/libgromacs_openmpi_d.a /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io /usr/lib64/openmpi/lib/libmpi.so /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl && : In member function ‘performSingleInsertion’: lto1: note: parameter passing for argument of type ‘struct pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 + popd ~/build/BUILD/gromacs-2026.3-build/gromacs-2026.3 + test -n openmpi + module unload mpi/openmpi-aarch64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw unload mpi/openmpi-aarch64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh unload mpi/openmpi-aarch64 + eval $'unset MPI_COMPILER;\nunset LD_LIBRARY_PATH;\nunset MPI_MAN;\nMANPATH=\'/usr/share/man:\'; export MANPATH;\nunset MPI_INCLUDE;\nunset _LMFILES_;\nunset LOADEDMODULES;\nunset CMAKE_PREFIX_PATH;\nPKG_CONFIG_PATH=\':/usr/lib64/pkgconfig:/usr/share/pkgconfig\'; export PKG_CONFIG_PATH;\nunset MPI_PYTHON3_SITEARCH;\nunset MPI_HOME;\nunset MPI_FORTRAN_MOD_DIR;\nunset __MODULES_LMALTNAME;\nunset __MODULES_LMCONFLICT;\n__MODULES_SHARE_MANPATH=\':1\'; export __MODULES_SHARE_MANPATH;\nunset MPI_SUFFIX;\nunset MPI_SYSCONFIG;\n__MODULES_SHARE_PKG_CONFIG_PATH=\':1\'; export __MODULES_SHARE_PKG_CONFIG_PATH;\nunset MPI_LIB;\nPATH=\'/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin\'; export PATH;\nunset MPI_BIN;\ntest 0;' ++ unset MPI_COMPILER ++ unset LD_LIBRARY_PATH ++ unset MPI_MAN ++ MANPATH=/usr/share/man: ++ export MANPATH ++ unset MPI_INCLUDE ++ unset _LMFILES_ ++ unset LOADEDMODULES ++ unset CMAKE_PREFIX_PATH ++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_HOME ++ unset MPI_FORTRAN_MOD_DIR ++ unset __MODULES_LMALTNAME ++ unset __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:1 ++ export __MODULES_SHARE_MANPATH ++ unset MPI_SUFFIX ++ unset MPI_SYSCONFIG ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ unset MPI_LIB ++ PATH=/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin ++ export PATH ++ unset MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.WPnxnM + umask 022 + cd /builddir/build/BUILD/gromacs-2026.3-build + '[' /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT '!=' / ']' + rm -rf /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT ++ dirname /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT + mkdir -p /builddir/build/BUILD/gromacs-2026.3-build + mkdir /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd gromacs-2026.3 + . /etc/profile.d/modules.sh ++ '[' -n /bin/sh ']' ++ '[' sh = sh ']' ++ shell=sh ++ '[' -f /usr/share/Modules/init/sh ']' ++ . /usr/share/Modules/init/sh +++ unset _mlshdbg +++ '[' 0 = 1 ']' +++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD' +++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD' +++ unset _mlre _mlIFS +++ '[' -n x ']' +++ _mlIFS=$' \t\n' +++ IFS=' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' ++++ eval 'echo ${LD_LIBRARY_PATH+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH ++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}' +++++ echo +++ _mlre='LD_LIBRARY_PATH='\'''\'' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_PRELOAD = LD_PRELOAD ']' +++ '[' LD_PRELOAD = LD_PRELOAD ']' ++++ eval 'echo ${LD_PRELOAD+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_PRELOAD ++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}' +++++ echo +++ _mlre='LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' +++ '[' -n 'LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']' +++ _mlre='eval LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 ' ++++ eval 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++++ LD_LIBRARY_PATH= +++++ LD_PRELOAD= +++++ __MODULES_QUARANTINE_SET=1 +++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++ _mlcode=$'_module_raw() {\n eval "$(/usr/bin/tclsh \'/usr/share/Modules/libexec/modulecmd.tcl\' sh "$@")";\n _mlstatus=$?;\n return $_mlstatus;\n};\nmodule() {\n local _mlredir=0;\n if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then\n if [ "$MODULES_REDIRECT_OUTPUT" = \'0\' ]; then\n _mlredir=0;\n elif [ "$MODULES_REDIRECT_OUTPUT" = \'1\' ]; then\n _mlredir=1;\n fi;\n fi;\n case " $@ " in\n *\' --no-redirect \'*) _mlredir=0 ;;\n *\' --redirect \'*) _mlredir=1 ;;\n esac;\n if [ $_mlredir -eq 0 ]; then\n _module_raw "$@";\n else\n _module_raw "$@" 2>&1;\n fi;\n};\nml() { module ml "$@"; };\nMODULES_CMD=\'/usr/share/Modules/libexec/modulecmd.tcl\'; export MODULES_CMD;\nunset __MODULES_AUTOINIT_INPROGRESS;\nMODULESHOME=\'/usr/share/Modules\'; export MODULESHOME;\ntest 0;' +++ _mlret=0 +++ '[' -n x ']' +++ IFS=$' \t\n' +++ unset _mlIFS +++ unset _mlre _mlv _mlrv +++ '[' 0 -eq 0 ']' +++ eval $'_module_raw() {\n eval "$(/usr/bin/tclsh \'/usr/share/Modules/libexec/modulecmd.tcl\' sh "$@")";\n _mlstatus=$?;\n return $_mlstatus;\n};\nmodule() {\n local _mlredir=0;\n if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then\n if [ "$MODULES_REDIRECT_OUTPUT" = \'0\' ]; then\n _mlredir=0;\n elif [ "$MODULES_REDIRECT_OUTPUT" = \'1\' ]; then\n _mlredir=1;\n fi;\n fi;\n case " $@ " in\n *\' --no-redirect \'*) _mlredir=0 ;;\n *\' --redirect \'*) _mlredir=1 ;;\n esac;\n if [ $_mlredir -eq 0 ]; then\n _module_raw "$@";\n else\n _module_raw "$@" 2>&1;\n fi;\n};\nml() { module ml "$@"; };\nMODULES_CMD=\'/usr/share/Modules/libexec/modulecmd.tcl\'; export MODULES_CMD;\nunset __MODULES_AUTOINIT_INPROGRESS;\nMODULESHOME=\'/usr/share/Modules\'; export MODULESHOME;\ntest 0;' ++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl ++++ export MODULES_CMD ++++ unset __MODULES_AUTOINIT_INPROGRESS ++++ MODULESHOME=/usr/share/Modules ++++ export MODULESHOME ++++ test 0 +++ '[' /bin/sh '!=' '' ']' +++ export -f _module_raw +++ export -f module ++++ type -t ml +++ '[' function = function ']' +++ export -f ml +++ unset _mlcode _mlret +++ '[' -n '' ']' + for p in '' _d + for mpi in '' mpich openmpi + test -n '' ~/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial ~/build/BUILD/gromacs-2026.3-build/gromacs-2026.3 + pushd serial + DESTDIR=/builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT + /usr/bin/cmake --install redhat-linux-build -- Install configuration: "Release" -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/COPYING -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/template/CMakeLists.txt -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/template/README -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/template/template.cpp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/template/Makefile.pkg -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/template/cmake/FindGROMACS.cmake -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/README.tutor -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/README_FreeEnergyModifications.txt -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/dna.rtp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/aminoacids.arn -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/atomtypes.atp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/aminoacids.vsd -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/rna.arn -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/aminoacids.rtp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/rna.rtp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/aminoacids.hdb -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/tip3p.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/tip4pew.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/forcefield.doc -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/aminoacids.c.tdb -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/ions.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/urea.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/rna.r2b -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/tip5p.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/dna.r2b -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/aminoacids.r2b -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/dna.arn -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/spc.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/tip4p.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/dna.hdb -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/ffnonbonded.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/ffbonded.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/rna.hdb -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/spce.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/watermodels.dat -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/forcefield.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/aminoacids.n.tdb -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/nsfactor.dat -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/tip4p.gro -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/atomtypes.atp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/aminoacids.vsd -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/aminoacids.rtp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/aminoacids.hdb -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/tip3p.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/forcefield.doc -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/aminoacids.c.tdb -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/ions.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/aminoacids.r2b -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/spc.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/tip4p.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/ffnonbonded.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/ffbonded.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/spce.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/watermodels.dat -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/forcefield.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/aminoacids.n.tdb -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/ff_dum.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/ffG53a5.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/atommass.dat -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/ffG43a2.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/bonds.dlg -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/dgsolv.dat -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/README -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/sfactor.dat -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/atom_nom.tbl -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/table6-11.xvg -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/dna.rtp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/aminoacids.arn -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/atomtypes.atp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/aminoacids.vsd -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/rna.arn -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/aminoacids.rtp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/rna.rtp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/aminoacids.hdb -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/tip3p.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/tip4pew.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/forcefield.doc -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/aminoacids.c.tdb -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/ions.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/urea.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/rna.r2b -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/tip5p.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/dna.r2b -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/aminoacids.r2b -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/dna.arn -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/spc.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/tip4p.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/dna.hdb -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/ffnonbonded.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/ffbonded.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/rna.hdb -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/spce.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/watermodels.dat -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/forcefield.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/aminoacids.n.tdb -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/residuetypes.dat -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/specbond.dat -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/dna.rtp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/aminoacids.arn -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/atomtypes.atp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/aminoacids.vsd -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/rna.arn -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/aminoacids.rtp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/rna.rtp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/aminoacids.hdb -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/tip3p.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/tip4pew.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/forcefield.doc -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/aminoacids.c.tdb -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/ions.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/urea.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/rna.r2b -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/tip5p.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/dna.r2b -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/aminoacids.r2b -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/dna.arn -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/spc.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/tip4p.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/dna.hdb -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/ffnonbonded.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/ffbonded.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/rna.hdb -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/spce.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/watermodels.dat -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/forcefield.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/aminoacids.n.tdb -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/atomtypes.atp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/aminoacids.vsd -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/aminoacids.rtp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/ethanol.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/methanol.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/aminoacids.hdb -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/1propanol.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/tip3p.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/tip4pew.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/forcefield.doc -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/aminoacids.c.tdb -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/ions.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/tip5p.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/aminoacids.r2b -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/tip5pe.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/spc.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/tip4p.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/atomname2type.n2t -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/ffnonbonded.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/ffbonded.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/spce.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/watermodels.dat -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/forcefield.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/aminoacids.n.tdb -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/scatteringfactors.dat -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/flexwat-ferguson.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/atomtypes.atp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/aminoacids.vsd -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/aminoacids.rtp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/aminoacids.hdb -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/tip3p.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/forcefield.doc -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/aminoacids.c.tdb -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/ions.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/aminoacids.r2b -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/spc.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/tip4p.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/atomname2type.n2t -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/ffnonbonded.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/ffbonded.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/spce.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/watermodels.dat -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/forcefield.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/aminoacids.n.tdb -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/ff_dum.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/atomtypes.atp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/aminoacids.vsd -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/aminoacids.rtp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/aminoacids.hdb -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/tip3p.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/forcefield.doc -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/aminoacids.c.tdb -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/ions.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/aminoacids.r2b -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/spc.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/tip4p.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/ffnonbonded.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/ffbonded.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/spce.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/watermodels.dat -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/forcefield.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/aminoacids.n.tdb -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/ff_dum.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/table6-8.xvg -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/atomtypes.atp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/ions_opc.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/aminoacids.rtp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/ions_opc3.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/ions_tip3p.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/aminoacids.hdb -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/opc3.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/tip3p.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/tip4pew.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/forcefield.doc -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/aminoacids.c.tdb -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/ions_spc.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/ions_tip4pew.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/ions_spce.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/aminoacids.r2b -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/opc.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/spc.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/ffnonbonded.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/ffbonded.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/spce.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/watermodels.dat -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/forcefield.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/aminoacids.n.tdb -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/ps.m2p -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/cb-shift.dat -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/tip3p.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/ffG45a3.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/flexspc.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/dna.rtp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/aminoacids.arn -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/atomtypes.atp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/aminoacids.vsd -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/rna.arn -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/aminoacids.rtp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/rna.rtp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/aminoacids.hdb -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/tip3p.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/tip4pew.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/forcefield.doc -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/aminoacids.c.tdb -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/ions.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/urea.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/rna.r2b -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/tip5p.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/dna.r2b -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/aminoacids.r2b -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/dna.arn -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/spc.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/tip4p.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/dna.hdb -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/ffnonbonded.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/ffbonded.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/rna.hdb -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/spce.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/watermodels.dat -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/forcefield.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/aminoacids.n.tdb -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/electroneg.dat -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/random.dat -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/sw.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/dna.rtp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/aminoacids.arn -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/atomtypes.atp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/rna.c.tdb -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/cmap.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/aminoacids.vsd -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/rna.arn -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/aminoacids.rtp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/ffnabonded.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/rna.rtp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/aminoacids.hdb -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/dna.c.tdb -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/tip3p.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/rna.n.tdb -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/lipids.rtp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/forcefield.doc -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/aminoacids.c.tdb -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/ions.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/rna.r2b -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/tip5p.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/aminoacids.r2b -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/tips3p.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/dna.arn -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/spc.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/tip4p.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/dna.hdb -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/ffnonbonded.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/lipids.hdb -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/ffnanonbonded.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/ffbonded.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/rna.hdb -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/spce.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/watermodels.dat -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/forcefield.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/dna.n.tdb -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/aminoacids.n.tdb -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/table6-10.xvg -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/ions.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/atomtypes.atp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/aminoacids.vsd -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/aminoacids.rtp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/dppc.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/aminoacids.hdb -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/tip3p.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/forcefield.doc -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/aminoacids.c.tdb -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/ions.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/aminoacids.r2b -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/popc.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/tmcl.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/spc.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/tip4p.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/ffnonbonded.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/ffbonded.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/spce.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/watermodels.dat -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/forcefield.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/aminoacids.n.tdb -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/ff_dum.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/dna.rtp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/aminoacids.arn -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/atomtypes.atp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/aminoacids.vsd -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/rna.arn -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/aminoacids.rtp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/rna.rtp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/aminoacids.hdb -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/tip3p.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/tip4pew.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/forcefield.doc -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/aminoacids.c.tdb -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/ions.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/urea.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/rna.r2b -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/tip5p.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/dna.r2b -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/aminoacids.r2b -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/dna.arn -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/spc.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/tip4p.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/dna.hdb -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/ffnonbonded.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/ffbonded.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/rna.hdb -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/spce.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/watermodels.dat -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/forcefield.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/aminoacids.n.tdb -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/dna.rtp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/aminoacids.arn -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/atomtypes.atp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/aminoacids.vsd -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/rna.arn -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/aminoacids.rtp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/rna.rtp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/aminoacids.hdb -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/tip3p.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/tip4pew.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/forcefield.doc -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/aminoacids.c.tdb -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/ions.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/urea.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/rna.r2b -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/tip5p.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/dna.r2b -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/aminoacids.r2b -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/dna.arn -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/spc.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/tip4p.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/dna.hdb -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/ffnonbonded.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/ffbonded.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/rna.hdb -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/spce.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/watermodels.dat -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/forcefield.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/aminoacids.n.tdb -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/ffoplsaa-n.tst -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/atomtypes.atp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/ions_opc.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/cmap.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/aminoacids.rtp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/ions_opc3.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/ions_tip3p.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/aminoacids.hdb -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/opc3.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/tip3p.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/tip4pew.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/forcefield.doc -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/aminoacids.c.tdb -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/ions_spc.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/ions_tip4pew.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/ions_spce.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/aminoacids.r2b -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/opc.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/spc.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/ffnonbonded.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/ffbonded.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/spce.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/watermodels.dat -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/forcefield.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/aminoacids.n.tdb -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/ffG53a6.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/vdwradii.dat -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/atomtypes.atp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/aminoacids.vsd -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/aminoacids.rtp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/aminoacids.hdb -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/tip3p.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/forcefield.doc -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/aminoacids.c.tdb -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/ions.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/aminoacids.r2b -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/spc.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/tip4p.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/ffnonbonded.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/ffbonded.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/spce.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/watermodels.dat -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/forcefield.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/aminoacids.n.tdb -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/ff_dum.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/ss.map -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/table6-9.xvg -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/flexspce.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/spc216.gro -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/spc.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/tip4p.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/ca-shift.dat -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/phbres.dat -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/co-shift.dat -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/elements.dat -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/dna.rtp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/aminoacids.arn -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/atomtypes.atp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/aminoacids.vsd -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/rna.arn -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/aminoacids.rtp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/rna.rtp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/aminoacids.hdb -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/tip3p.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/tip4pew.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/forcefield.doc -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/aminoacids.c.tdb -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/ions.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/urea.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/rna.r2b -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/tip5p.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/dna.r2b -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/aminoacids.r2b -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/dna.arn -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/spc.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/tip4p.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/dna.hdb -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/ffnonbonded.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/ffbonded.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/rna.hdb -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/spce.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/watermodels.dat -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/forcefield.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/aminoacids.n.tdb -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/edissoc.dat -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/table6-12.xvg -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/ffG43a1.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/spce.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/ha-shift.dat -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/xlateat.dat -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/tip5p.gro -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/atomtypes.atp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/aminoacids.vsd -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/aminoacids.rtp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/methanol.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/methanol216.gro -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/aminoacids.hdb -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/tip3p.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/forcefield.doc -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/aminoacids.c.tdb -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/ions.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/aminoacids.r2b -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/spc.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/tip4p.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/ffnonbonded.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/ffbonded.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/spce.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/watermodels.dat -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/forcefield.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/aminoacids.n.tdb -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/ff_dum.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/ffoplsaa.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/bin/GMXRC -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/bin/GMXRC.bash -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/bin/GMXRC.zsh -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/bin/GMXRC.csh -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/bin/demux.pl -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/bin/xplor2gmx.pl -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/restraint -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/restraint/restraintpotential.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/fileio -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/fileio/tpxio.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/fileio/filetypes.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/fileio/pdbio.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/fileio/oenv.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/fileio/trxio.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/fileio/confio.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/topology -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/topology/atomprop.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/topology/forcefieldparameters.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/topology/ifunc.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/topology/topology.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/topology/index.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/topology/block.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/topology/idef.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/topology/symtab.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/topology/topology_enums.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/topology/atoms.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/trajectoryanalysis -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/trajectoryanalysis/cmdlinerunner.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/trajectoryanalysis/analysissettings.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/trajectoryanalysis/analysismodule.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/trajectoryanalysis/topologyinformation.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/math -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/math/do_fit.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/math/units.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/math/functions.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/math/utilities.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/trajectory -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/trajectory/trajectoryframe.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/pbcutil -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/pbcutil/pbc.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/mdtypes -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/mdtypes/md_enums.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/mdtypes/inputrec.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/selection -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/selection/selectionoption.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/selection/indexutil.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/selection/position.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/selection/selectioncollection.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/selection/selectionenums.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/selection/selection.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/selection/nbsearch.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/selection/selectionoptionbehavior.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/selection/selectionoptionmanager.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/vec.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/real.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/programcontext.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/unique_cptr.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/range.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/fileptr.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/enumerationhelpers.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/arrayref.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/current_function.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/classhelpers.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/baseversion.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/basedefinitions.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/listoflists.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/stringutil.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/exceptions.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/smalloc.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/pleasecite.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/futil.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/flags.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/vectypes.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/gmxassert.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/analysisdata -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/analysisdata/dataframe.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/analysisdata/abstractdata.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/analysisdata/arraydata.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/analysisdata/modules -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/analysisdata/modules/lifetime.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/analysisdata/modules/plot.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/analysisdata/modules/displacement.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/analysisdata/modules/average.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/analysisdata/modules/histogram.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/analysisdata/datamodule.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/analysisdata/analysisdata.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/options -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/options/optionfiletype.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/options/basicoptions.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/options/filenameoptionmanager.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/options/ivaluestore.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/options/ioptionscontainer.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/options/ioptionsbehavior.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/options/optionflags.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/options/filenameoption.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/options/timeunitmanager.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/options/ioptionscontainerwithsections.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/options/abstractoption.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/options/options.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/version.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/libgromacs_export.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/lib64/libgmxapi.so.0.4.0 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/lib64/libgmxapi.so.0 -- Set non-toolchain portion of runtime path of "/builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/lib64/libgmxapi.so.0.4.0" to "" -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/lib64/libgmxapi.so -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/cmake/gmxapi/gmxapi.cmake -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/cmake/gmxapi/gmxapi-release.cmake -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/cmake/gmxapi/gmxapi-config-version.cmake -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/cmake/gmxapi/gmxapi-config.cmake -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gmxapi -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gmxapi/compat -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gmxapi/compat/tpr.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gmxapi/compat/mdparams.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gmxapi/session.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gmxapi/system.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gmxapi/session -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gmxapi/session/resources.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gmxapi/gromacsfwd.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gmxapi/status.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gmxapi/md -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gmxapi/md/mdmodule.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gmxapi/md/mdsignals.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gmxapi/md.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gmxapi/gmxapicompat.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gmxapi/exceptions.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gmxapi/mpi -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gmxapi/mpi/gmxapi_mpi.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gmxapi/gmxapi.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gmxapi/context.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gmxapi/version.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gmxapi/mpi/resourceassignment.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/lib64/libnblib_gmx.so.0.1.0 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/lib64/libnblib_gmx.so.0 -- Set non-toolchain portion of runtime path of "/builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/lib64/libnblib_gmx.so.0.1.0" to "" -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/lib64/libnblib_gmx.so -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/nblib -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/nblib/box.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/nblib/exception.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/nblib/simulationstate.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/nblib/molecules.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/nblib/listed_forces -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/nblib/listed_forces/definitions.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/nblib/listed_forces/calculator.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/nblib/listed_forces/bondtypes.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/nblib/nblib.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/nblib/tpr.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/nblib/kerneloptions.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/nblib/particletype.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/nblib/particlesequencer.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/nblib/nbnxmsetuphelpers.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/nblib/gmxcalculatorcpu.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/nblib/topology.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/nblib/basicdefinitions.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/nblib/interactions.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/nblib/util -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/nblib/util/util.hpp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/nblib/util/traits.hpp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/nblib/util/setup.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/nblib/integrator.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/nblib/vector.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/external/boost/stl_interfaces/fwd.hpp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/external/boost/stl_interfaces/iterator_interface.hpp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/mdrun/simulationinputhandle.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/lib64/libgromacs.so.11.0.0 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/lib64/libgromacs.so.11 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/lib64/libgromacs.so -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/lib64/pkgconfig/libgromacs.pc -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/cmake/gromacs/libgromacs.cmake -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/cmake/gromacs/libgromacs-release.cmake -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/cmake/gromacs/gromacs-config.cmake -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/cmake/gromacs/gromacs-config-version.cmake -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/cmake/gromacs/gromacs-hints.cmake -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/gpu_utils/device_utils.clh -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/gpu_utils/vectype_ops.clh -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/nbnxm/opencl/nbnxm_ocl_consts.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/nbnxm/opencl/nbnxm_ocl_kernel.clh -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/nbnxm/opencl/nbnxm_ocl_kernel_pruneonly.clh -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/nbnxm/opencl/nbnxm_ocl_kernel_utils.clh -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/nbnxm/opencl/nbnxm_ocl_kernels.cl -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/nbnxm/opencl/nbnxm_ocl_kernels.clh -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/nbnxm/opencl/nbnxm_ocl_kernels_fastgen.clh -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/nbnxm/opencl/nbnxm_ocl_kernels_fastgen_add_twincut.clh -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/ewald/pme_gather.clh -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/ewald/pme_gpu_calculate_splines.clh -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/ewald/pme_gpu_types.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/ewald/pme_program.cl -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/ewald/pme_solve.clh -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/ewald/pme_spread.clh -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/bin/gmx -- Set non-toolchain portion of runtime path of "/builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/bin/gmx" to "" -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/bin -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/bin/gmx-completion.bash -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/bin/gmx-completion-gmx.bash -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-nmr.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-densmap.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-saltbr.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-grompp.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-dyecoupl.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-x2top.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-msd.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-gyrate-legacy.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-gangle.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-extract-cluster.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-pdb2gmx.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-check.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-rotmat.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-bundle.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-nmeig.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-energy.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-dipoles.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-vanhove.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-eneconv.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-sorient.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-chi.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-genion.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-principal.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-polystat.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-sham.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-sans-legacy.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-rotacf.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-dump.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-saxs-legacy.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-covar.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-solvate.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-spatial.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-rmsf.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-report-methods.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-confrms.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-genrestr.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-trajectory.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-rdf.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-wham.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-tune_pme.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-dos.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-enemat.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-nonbonded-benchmark.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-rama.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-dielectric.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-wheel.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-trjorder.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-mdmat.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-helix.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-mindist.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-pme_error.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-density.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-hbond-legacy.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-pairdist.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-tcaf.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-traj.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-sigeps.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-xpm2ps.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-gyrate.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-velacc.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-hbond.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-helixorient.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-freevolume.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-order.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-lie.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-sasa.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-trjconv.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-scattering.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-mk_angndx.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-clustsize.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-dssp.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-convert-tpr.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-nmtraj.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-bar.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-convert-trj.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-current.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-rms.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-mdrun.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-awh.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-cluster.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-make_edi.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-h2order.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-potential.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-analyze.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-angle.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-spol.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-insert-molecules.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-distance.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-anaeig.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-densorder.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-make_ndx.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-help.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-nmens.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-editconf.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-trjcat.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-genconf.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-rmsdist.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-select.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-filter.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-hydorder.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-disre.1 + popd ~/build/BUILD/gromacs-2026.3-build/gromacs-2026.3 + test -n '' + for mpi in '' mpich openmpi + test -n mpich + module load mpi/mpich-aarch64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw load mpi/mpich-aarch64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh load mpi/mpich-aarch64 + eval $'LD_LIBRARY_PATH=\'/usr/lib64/mpich/lib\'; export LD_LIBRARY_PATH;\nMPI_COMPILER=\'mpich-aarch64\'; export MPI_COMPILER;\nMANPATH=\'/usr/share/man/mpich-aarch64:/usr/share/man:\'; export MANPATH;\nMPI_INCLUDE=\'/usr/include/mpich-aarch64\'; export MPI_INCLUDE;\nMPI_MAN=\'/usr/share/man/mpich-aarch64\'; export MPI_MAN;\nMPI_PYTHON_SITEARCH=\'%{python2_sitearch}/mpich\'; export MPI_PYTHON_SITEARCH;\n_LMFILES_=\'/usr/share/modulefiles/mpi/mpich-aarch64\'; export _LMFILES_;\nLOADEDMODULES=\'mpi/mpich-aarch64\'; export LOADEDMODULES;\nCMAKE_PREFIX_PATH=\'/usr/lib64/mpich\'; export CMAKE_PREFIX_PATH;\nPKG_CONFIG_PATH=\'/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig\'; export PKG_CONFIG_PATH;\nMPI_PYTHON3_SITEARCH=\'/usr/lib64/python3.15/site-packages/mpich\'; export MPI_PYTHON3_SITEARCH;\nMPI_FORTRAN_MOD_DIR=\'/usr/lib64/gfortran/modules/mpich\'; export MPI_FORTRAN_MOD_DIR;\nMPI_HOME=\'/usr/lib64/mpich\'; export MPI_HOME;\n__MODULES_LMCONFLICT=\'mpi/mpich-aarch64&mpi\'; export __MODULES_LMCONFLICT;\n__MODULES_SHARE_MANPATH=\':2\'; export __MODULES_SHARE_MANPATH;\nMPI_SYSCONFIG=\'/etc/mpich-aarch64\'; export MPI_SYSCONFIG;\nMPI_SUFFIX=\'_mpich\'; export MPI_SUFFIX;\n__MODULES_SHARE_PKG_CONFIG_PATH=\':1\'; export __MODULES_SHARE_PKG_CONFIG_PATH;\nMPI_PYTHON2_SITEARCH=\'%{python2_sitearch}/mpich\'; export MPI_PYTHON2_SITEARCH;\nMPI_LIB=\'/usr/lib64/mpich/lib\'; export MPI_LIB;\nPATH=\'/usr/lib64/mpich/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin\'; export PATH;\nMPI_BIN=\'/usr/lib64/mpich/bin\'; export MPI_BIN;\ntest 0;' ++ LD_LIBRARY_PATH=/usr/lib64/mpich/lib ++ export LD_LIBRARY_PATH ++ MPI_COMPILER=mpich-aarch64 ++ export MPI_COMPILER ++ MANPATH=/usr/share/man/mpich-aarch64:/usr/share/man: ++ export MANPATH ++ MPI_INCLUDE=/usr/include/mpich-aarch64 ++ export MPI_INCLUDE ++ MPI_MAN=/usr/share/man/mpich-aarch64 ++ export MPI_MAN ++ MPI_PYTHON_SITEARCH='%{python2_sitearch}/mpich' ++ export MPI_PYTHON_SITEARCH ++ _LMFILES_=/usr/share/modulefiles/mpi/mpich-aarch64 ++ export _LMFILES_ ++ LOADEDMODULES=mpi/mpich-aarch64 ++ export LOADEDMODULES ++ CMAKE_PREFIX_PATH=/usr/lib64/mpich ++ export CMAKE_PREFIX_PATH ++ PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.15/site-packages/mpich ++ export MPI_PYTHON3_SITEARCH ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich ++ export MPI_FORTRAN_MOD_DIR ++ MPI_HOME=/usr/lib64/mpich ++ export MPI_HOME ++ __MODULES_LMCONFLICT='mpi/mpich-aarch64&mpi' ++ export __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:2 ++ export __MODULES_SHARE_MANPATH ++ MPI_SYSCONFIG=/etc/mpich-aarch64 ++ export MPI_SYSCONFIG ++ MPI_SUFFIX=_mpich ++ export MPI_SUFFIX ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ MPI_PYTHON2_SITEARCH='%{python2_sitearch}/mpich' ++ export MPI_PYTHON2_SITEARCH ++ MPI_LIB=/usr/lib64/mpich/lib ++ export MPI_LIB ++ PATH=/usr/lib64/mpich/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin ++ export PATH ++ MPI_BIN=/usr/lib64/mpich/bin ++ export MPI_BIN ++ test 0 ~/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich ~/build/BUILD/gromacs-2026.3-build/gromacs-2026.3 + _mlstatus=0 + return 0 + pushd mpich + DESTDIR=/builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT + /usr/bin/cmake --install redhat-linux-build -- Install configuration: "Release" -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/COPYING -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/template/CMakeLists.txt -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/template/README -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/template/template.cpp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/template/Makefile.pkg -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/template/cmake/FindGROMACS.cmake -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/README.tutor -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/README_FreeEnergyModifications.txt -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/dna.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/aminoacids.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/atomtypes.atp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/aminoacids.vsd -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/rna.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/aminoacids.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/rna.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/aminoacids.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/tip3p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/tip4pew.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/forcefield.doc -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/aminoacids.c.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/ions.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/urea.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/rna.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/tip5p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/dna.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/aminoacids.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/dna.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/spc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/tip4p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/dna.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/ffnonbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/ffbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/rna.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/spce.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/watermodels.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/forcefield.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/aminoacids.n.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/nsfactor.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/tip4p.gro -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/atomtypes.atp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/aminoacids.vsd -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/aminoacids.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/aminoacids.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/tip3p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/forcefield.doc -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/aminoacids.c.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/ions.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/aminoacids.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/spc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/tip4p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/ffnonbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/ffbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/spce.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/watermodels.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/forcefield.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/aminoacids.n.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/ff_dum.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/ffG53a5.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/atommass.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/ffG43a2.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/bonds.dlg -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/dgsolv.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/README -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/sfactor.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/atom_nom.tbl -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/table6-11.xvg -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/dna.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/aminoacids.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/atomtypes.atp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/aminoacids.vsd -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/rna.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/aminoacids.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/rna.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/aminoacids.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/tip3p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/tip4pew.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/forcefield.doc -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/aminoacids.c.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/ions.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/urea.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/rna.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/tip5p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/dna.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/aminoacids.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/dna.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/spc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/tip4p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/dna.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/ffnonbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/ffbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/rna.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/spce.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/watermodels.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/forcefield.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/aminoacids.n.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/residuetypes.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/specbond.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/dna.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/aminoacids.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/atomtypes.atp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/aminoacids.vsd -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/rna.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/aminoacids.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/rna.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/aminoacids.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/tip3p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/tip4pew.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/forcefield.doc -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/aminoacids.c.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/ions.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/urea.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/rna.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/tip5p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/dna.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/aminoacids.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/dna.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/spc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/tip4p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/dna.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/ffnonbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/ffbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/rna.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/spce.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/watermodels.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/forcefield.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/aminoacids.n.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/atomtypes.atp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/aminoacids.vsd -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/aminoacids.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/ethanol.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/methanol.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/aminoacids.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/1propanol.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/tip3p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/tip4pew.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/forcefield.doc -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/aminoacids.c.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/ions.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/tip5p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/aminoacids.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/tip5pe.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/spc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/tip4p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/atomname2type.n2t -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/ffnonbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/ffbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/spce.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/watermodels.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/forcefield.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/aminoacids.n.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/scatteringfactors.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/flexwat-ferguson.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/atomtypes.atp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/aminoacids.vsd -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/aminoacids.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/aminoacids.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/tip3p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/forcefield.doc -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/aminoacids.c.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/ions.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/aminoacids.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/spc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/tip4p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/atomname2type.n2t -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/ffnonbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/ffbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/spce.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/watermodels.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/forcefield.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/aminoacids.n.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/ff_dum.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/atomtypes.atp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/aminoacids.vsd -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/aminoacids.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/aminoacids.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/tip3p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/forcefield.doc -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/aminoacids.c.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/ions.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/aminoacids.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/spc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/tip4p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/ffnonbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/ffbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/spce.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/watermodels.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/forcefield.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/aminoacids.n.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/ff_dum.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/table6-8.xvg -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/atomtypes.atp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/ions_opc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/aminoacids.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/ions_opc3.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/ions_tip3p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/aminoacids.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/opc3.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/tip3p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/tip4pew.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/forcefield.doc -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/aminoacids.c.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/ions_spc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/ions_tip4pew.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/ions_spce.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/aminoacids.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/opc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/spc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/ffnonbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/ffbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/spce.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/watermodels.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/forcefield.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/aminoacids.n.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/ps.m2p -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/cb-shift.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/tip3p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/ffG45a3.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/flexspc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/dna.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/aminoacids.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/atomtypes.atp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/aminoacids.vsd -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/rna.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/aminoacids.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/rna.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/aminoacids.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/tip3p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/tip4pew.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/forcefield.doc -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/aminoacids.c.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/ions.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/urea.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/rna.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/tip5p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/dna.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/aminoacids.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/dna.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/spc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/tip4p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/dna.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/ffnonbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/ffbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/rna.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/spce.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/watermodels.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/forcefield.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/aminoacids.n.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/electroneg.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/random.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/sw.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/dna.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/aminoacids.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/atomtypes.atp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/rna.c.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/cmap.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/aminoacids.vsd -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/rna.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/aminoacids.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/ffnabonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/rna.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/aminoacids.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/dna.c.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/tip3p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/rna.n.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/lipids.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/forcefield.doc -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/aminoacids.c.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/ions.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/rna.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/tip5p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/aminoacids.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/tips3p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/dna.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/spc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/tip4p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/dna.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/ffnonbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/lipids.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/ffnanonbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/ffbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/rna.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/spce.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/watermodels.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/forcefield.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/dna.n.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/aminoacids.n.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/table6-10.xvg -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/ions.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/atomtypes.atp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/aminoacids.vsd -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/aminoacids.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/dppc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/aminoacids.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/tip3p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/forcefield.doc -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/aminoacids.c.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/ions.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/aminoacids.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/popc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/tmcl.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/spc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/tip4p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/ffnonbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/ffbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/spce.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/watermodels.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/forcefield.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/aminoacids.n.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/ff_dum.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/dna.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/aminoacids.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/atomtypes.atp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/aminoacids.vsd -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/rna.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/aminoacids.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/rna.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/aminoacids.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/tip3p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/tip4pew.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/forcefield.doc -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/aminoacids.c.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/ions.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/urea.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/rna.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/tip5p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/dna.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/aminoacids.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/dna.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/spc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/tip4p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/dna.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/ffnonbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/ffbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/rna.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/spce.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/watermodels.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/forcefield.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/aminoacids.n.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/dna.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/aminoacids.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/atomtypes.atp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/aminoacids.vsd -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/rna.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/aminoacids.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/rna.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/aminoacids.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/tip3p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/tip4pew.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/forcefield.doc -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/aminoacids.c.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/ions.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/urea.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/rna.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/tip5p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/dna.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/aminoacids.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/dna.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/spc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/tip4p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/dna.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/ffnonbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/ffbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/rna.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/spce.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/watermodels.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/forcefield.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/aminoacids.n.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/ffoplsaa-n.tst -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/atomtypes.atp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/ions_opc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/cmap.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/aminoacids.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/ions_opc3.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/ions_tip3p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/aminoacids.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/opc3.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/tip3p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/tip4pew.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/forcefield.doc -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/aminoacids.c.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/ions_spc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/ions_tip4pew.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/ions_spce.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/aminoacids.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/opc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/spc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/ffnonbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/ffbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/spce.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/watermodels.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/forcefield.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/aminoacids.n.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/ffG53a6.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/vdwradii.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/atomtypes.atp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/aminoacids.vsd -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/aminoacids.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/aminoacids.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/tip3p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/forcefield.doc -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/aminoacids.c.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/ions.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/aminoacids.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/spc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/tip4p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/ffnonbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/ffbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/spce.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/watermodels.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/forcefield.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/aminoacids.n.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/ff_dum.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/ss.map -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/table6-9.xvg -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/flexspce.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/spc216.gro -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/spc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/tip4p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/ca-shift.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/phbres.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/co-shift.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/elements.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/dna.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/aminoacids.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/atomtypes.atp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/aminoacids.vsd -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/rna.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/aminoacids.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/rna.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/aminoacids.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/tip3p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/tip4pew.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/forcefield.doc -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/aminoacids.c.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/ions.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/urea.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/rna.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/tip5p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/dna.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/aminoacids.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/dna.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/spc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/tip4p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/dna.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/ffnonbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/ffbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/rna.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/spce.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/watermodels.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/forcefield.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/aminoacids.n.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/edissoc.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/table6-12.xvg -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/ffG43a1.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/spce.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/ha-shift.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/xlateat.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/tip5p.gro -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/atomtypes.atp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/aminoacids.vsd -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/aminoacids.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/methanol.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/methanol216.gro -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/aminoacids.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/tip3p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/forcefield.doc -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/aminoacids.c.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/ions.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/aminoacids.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/spc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/tip4p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/ffnonbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/ffbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/spce.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/watermodels.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/forcefield.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/aminoacids.n.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/ff_dum.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/ffoplsaa.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/lib64/mpich/bin/GMXRC -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/lib64/mpich/bin/GMXRC.bash -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/lib64/mpich/bin/GMXRC.zsh -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/lib64/mpich/bin/GMXRC.csh -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/lib64/mpich/bin/demux.pl -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/lib64/mpich/bin/xplor2gmx.pl -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/restraint -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/restraint/restraintpotential.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/fileio -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/fileio/tpxio.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/fileio/filetypes.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/fileio/pdbio.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/fileio/oenv.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/fileio/trxio.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/fileio/confio.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/topology -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/topology/atomprop.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/topology/forcefieldparameters.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/topology/ifunc.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/topology/topology.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/topology/index.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/topology/block.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/topology/idef.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/topology/symtab.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/topology/topology_enums.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/topology/atoms.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/trajectoryanalysis -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/trajectoryanalysis/cmdlinerunner.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/trajectoryanalysis/analysissettings.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/trajectoryanalysis/analysismodule.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/trajectoryanalysis/topologyinformation.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/math -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/math/do_fit.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/math/units.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/math/functions.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/math/utilities.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/trajectory -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/trajectory/trajectoryframe.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/pbcutil -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/pbcutil/pbc.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/mdtypes -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/mdtypes/md_enums.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/mdtypes/inputrec.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/selection -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/selection/selectionoption.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/selection/indexutil.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/selection/position.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/selection/selectioncollection.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/selection/selectionenums.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/selection/selection.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/selection/nbsearch.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/selection/selectionoptionbehavior.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/selection/selectionoptionmanager.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/vec.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/real.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/programcontext.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/unique_cptr.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/range.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/fileptr.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/enumerationhelpers.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/arrayref.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/current_function.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/classhelpers.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/baseversion.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/basedefinitions.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/listoflists.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/stringutil.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/exceptions.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/smalloc.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/pleasecite.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/futil.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/flags.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/vectypes.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/gmxassert.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/analysisdata -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/analysisdata/dataframe.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/analysisdata/abstractdata.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/analysisdata/arraydata.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/analysisdata/modules -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/analysisdata/modules/lifetime.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/analysisdata/modules/plot.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/analysisdata/modules/displacement.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/analysisdata/modules/average.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/analysisdata/modules/histogram.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/analysisdata/datamodule.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/analysisdata/analysisdata.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/options -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/options/optionfiletype.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/options/basicoptions.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/options/filenameoptionmanager.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/options/ivaluestore.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/options/ioptionscontainer.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/options/ioptionsbehavior.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/options/optionflags.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/options/filenameoption.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/options/timeunitmanager.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/options/ioptionscontainerwithsections.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/options/abstractoption.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/options/options.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/version.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/libgromacs_export.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/external/boost/stl_interfaces/fwd.hpp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/external/boost/stl_interfaces/iterator_interface.hpp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/mdrun/simulationinputhandle.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/gpu_utils/device_utils.clh -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/gpu_utils/vectype_ops.clh -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/nbnxm/opencl/nbnxm_ocl_consts.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/nbnxm/opencl/nbnxm_ocl_kernel.clh -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/nbnxm/opencl/nbnxm_ocl_kernel_pruneonly.clh -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/nbnxm/opencl/nbnxm_ocl_kernel_utils.clh -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/nbnxm/opencl/nbnxm_ocl_kernels.cl -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/nbnxm/opencl/nbnxm_ocl_kernels.clh -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/nbnxm/opencl/nbnxm_ocl_kernels_fastgen.clh -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/nbnxm/opencl/nbnxm_ocl_kernels_fastgen_add_twincut.clh -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/ewald/pme_gather.clh -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/ewald/pme_gpu_calculate_splines.clh -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/ewald/pme_gpu_types.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/ewald/pme_program.cl -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/ewald/pme_solve.clh -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/ewald/pme_spread.clh -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/lib64/mpich/bin/gmx_mpich -- Set non-toolchain portion of runtime path of "/builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/lib64/mpich/bin/gmx_mpich" to "" -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/lib64/mpich/bin -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/lib64/mpich/bin/gmx-completion.bash -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/lib64/mpich/bin/gmx-completion-gmx_mpich.bash -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-nmr.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-densmap.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-saltbr.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-grompp.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-dyecoupl.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-x2top.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-msd.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-gyrate-legacy.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-gangle.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-extract-cluster.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-pdb2gmx.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-check.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-rotmat.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-bundle.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-nmeig.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-energy.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-dipoles.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-vanhove.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-eneconv.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-sorient.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-chi.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-genion.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-principal.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-polystat.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-sham.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-sans-legacy.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-rotacf.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-dump.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-saxs-legacy.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-covar.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-solvate.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-spatial.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-rmsf.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-report-methods.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-confrms.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-genrestr.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-trajectory.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-rdf.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-wham.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-tune_pme.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-dos.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-enemat.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-nonbonded-benchmark.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-rama.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-dielectric.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-wheel.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-trjorder.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-mdmat.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-helix.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-mindist.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-pme_error.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-density.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-hbond-legacy.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-pairdist.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-tcaf.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-traj.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-sigeps.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-xpm2ps.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-gyrate.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-velacc.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-hbond.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-helixorient.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-freevolume.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-order.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-lie.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-sasa.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-trjconv.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-scattering.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-mk_angndx.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-clustsize.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-dssp.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-convert-tpr.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-nmtraj.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-bar.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-convert-trj.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-current.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-rms.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-mdrun.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-awh.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-cluster.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-make_edi.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-h2order.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-potential.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-analyze.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-angle.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-spol.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-insert-molecules.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-distance.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-anaeig.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-densorder.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-make_ndx.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-help.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-nmens.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-editconf.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-trjcat.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-genconf.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-rmsdist.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-select.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-filter.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-hydorder.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-disre.1 + popd ~/build/BUILD/gromacs-2026.3-build/gromacs-2026.3 + test -n mpich + module unload mpi/mpich-aarch64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw unload mpi/mpich-aarch64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh unload mpi/mpich-aarch64 + eval $'unset LD_LIBRARY_PATH;\nunset MPI_COMPILER;\nMANPATH=\'/usr/share/man:\'; export MANPATH;\nunset MPI_INCLUDE;\nunset MPI_MAN;\nunset MPI_PYTHON_SITEARCH;\nunset _LMFILES_;\nunset LOADEDMODULES;\nunset CMAKE_PREFIX_PATH;\nPKG_CONFIG_PATH=\':/usr/lib64/pkgconfig:/usr/share/pkgconfig\'; export PKG_CONFIG_PATH;\nunset MPI_PYTHON3_SITEARCH;\nunset MPI_FORTRAN_MOD_DIR;\nunset MPI_HOME;\nunset __MODULES_LMCONFLICT;\n__MODULES_SHARE_MANPATH=\':1\'; export __MODULES_SHARE_MANPATH;\nunset MPI_SYSCONFIG;\nunset MPI_SUFFIX;\n__MODULES_SHARE_PKG_CONFIG_PATH=\':1\'; export __MODULES_SHARE_PKG_CONFIG_PATH;\nunset MPI_PYTHON2_SITEARCH;\nunset MPI_LIB;\nPATH=\'/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin\'; export PATH;\nunset MPI_BIN;\ntest 0;' ++ unset LD_LIBRARY_PATH ++ unset MPI_COMPILER ++ MANPATH=/usr/share/man: ++ export MANPATH ++ unset MPI_INCLUDE ++ unset MPI_MAN ++ unset MPI_PYTHON_SITEARCH ++ unset _LMFILES_ ++ unset LOADEDMODULES ++ unset CMAKE_PREFIX_PATH ++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_FORTRAN_MOD_DIR ++ unset MPI_HOME ++ unset __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:1 ++ export __MODULES_SHARE_MANPATH ++ unset MPI_SYSCONFIG ++ unset MPI_SUFFIX ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ unset MPI_PYTHON2_SITEARCH ++ unset MPI_LIB ++ PATH=/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin ++ export PATH ++ unset MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + for mpi in '' mpich openmpi + test -n openmpi + module load mpi/openmpi-aarch64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw load mpi/openmpi-aarch64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh load mpi/openmpi-aarch64 + eval $'MPI_COMPILER=\'openmpi-aarch64\'; export MPI_COMPILER;\nLD_LIBRARY_PATH=\'/usr/lib64/openmpi/lib\'; export LD_LIBRARY_PATH;\nMPI_MAN=\'/usr/share/man/openmpi-aarch64\'; export MPI_MAN;\nMANPATH=\'/usr/share/man/openmpi-aarch64:/usr/share/man:\'; export MANPATH;\nMPI_INCLUDE=\'/usr/include/openmpi-aarch64\'; export MPI_INCLUDE;\n_LMFILES_=\'/usr/share/modulefiles/mpi/openmpi-aarch64\'; export _LMFILES_;\nLOADEDMODULES=\'mpi/openmpi-aarch64\'; export LOADEDMODULES;\nCMAKE_PREFIX_PATH=\'/usr/lib64/openmpi\'; export CMAKE_PREFIX_PATH;\nPKG_CONFIG_PATH=\'/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig\'; export PKG_CONFIG_PATH;\nMPI_PYTHON3_SITEARCH=\'/usr/lib64/python3.15/site-packages/openmpi\'; export MPI_PYTHON3_SITEARCH;\nMPI_HOME=\'/usr/lib64/openmpi\'; export MPI_HOME;\nMPI_FORTRAN_MOD_DIR=\'/usr/lib64/gfortran/modules/openmpi\'; export MPI_FORTRAN_MOD_DIR;\n__MODULES_LMALTNAME=\'mpi/openmpi-aarch64&as|mpi/default&as|mpi/latest\'; export __MODULES_LMALTNAME;\n__MODULES_LMCONFLICT=\'mpi/openmpi-aarch64&mpi\'; export __MODULES_LMCONFLICT;\n__MODULES_SHARE_MANPATH=\':2\'; export __MODULES_SHARE_MANPATH;\nMPI_SUFFIX=\'_openmpi\'; export MPI_SUFFIX;\nMPI_SYSCONFIG=\'/etc/openmpi-aarch64\'; export MPI_SYSCONFIG;\n__MODULES_SHARE_PKG_CONFIG_PATH=\':1\'; export __MODULES_SHARE_PKG_CONFIG_PATH;\nMPI_LIB=\'/usr/lib64/openmpi/lib\'; export MPI_LIB;\nPATH=\'/usr/lib64/openmpi/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin\'; export PATH;\nMPI_BIN=\'/usr/lib64/openmpi/bin\'; export MPI_BIN;\ntest 0;' ++ MPI_COMPILER=openmpi-aarch64 ++ export MPI_COMPILER ++ LD_LIBRARY_PATH=/usr/lib64/openmpi/lib ++ export LD_LIBRARY_PATH ++ MPI_MAN=/usr/share/man/openmpi-aarch64 ++ export MPI_MAN ++ MANPATH=/usr/share/man/openmpi-aarch64:/usr/share/man: ++ export MANPATH ++ MPI_INCLUDE=/usr/include/openmpi-aarch64 ++ export MPI_INCLUDE ++ _LMFILES_=/usr/share/modulefiles/mpi/openmpi-aarch64 ++ export _LMFILES_ ++ LOADEDMODULES=mpi/openmpi-aarch64 ++ export LOADEDMODULES ++ CMAKE_PREFIX_PATH=/usr/lib64/openmpi ++ export CMAKE_PREFIX_PATH ++ PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.15/site-packages/openmpi ++ export MPI_PYTHON3_SITEARCH ++ MPI_HOME=/usr/lib64/openmpi ++ export MPI_HOME ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi ++ export MPI_FORTRAN_MOD_DIR ++ __MODULES_LMALTNAME='mpi/openmpi-aarch64&as|mpi/default&as|mpi/latest' ++ export __MODULES_LMALTNAME ++ __MODULES_LMCONFLICT='mpi/openmpi-aarch64&mpi' ++ export __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:2 ++ export __MODULES_SHARE_MANPATH ++ MPI_SUFFIX=_openmpi ++ export MPI_SUFFIX ++ MPI_SYSCONFIG=/etc/openmpi-aarch64 ++ export MPI_SYSCONFIG ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ MPI_LIB=/usr/lib64/openmpi/lib ++ export MPI_LIB ~/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi ~/build/BUILD/gromacs-2026.3-build/gromacs-2026.3 ++ PATH=/usr/lib64/openmpi/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin ++ export PATH ++ MPI_BIN=/usr/lib64/openmpi/bin ++ export MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + pushd openmpi + DESTDIR=/builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT + /usr/bin/cmake --install redhat-linux-build -- Install configuration: "Release" -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/COPYING -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/template/CMakeLists.txt -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/template/README -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/template/template.cpp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/template/Makefile.pkg -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/template/cmake/FindGROMACS.cmake -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/README.tutor -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/README_FreeEnergyModifications.txt -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/dna.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/aminoacids.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/atomtypes.atp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/aminoacids.vsd -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/rna.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/aminoacids.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/rna.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/aminoacids.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/tip3p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/tip4pew.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/forcefield.doc -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/aminoacids.c.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/ions.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/urea.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/rna.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/tip5p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/dna.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/aminoacids.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/dna.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/spc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/tip4p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/dna.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/ffnonbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/ffbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/rna.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/spce.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/watermodels.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/forcefield.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/aminoacids.n.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/nsfactor.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/tip4p.gro -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/atomtypes.atp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/aminoacids.vsd -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/aminoacids.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/aminoacids.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/tip3p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/forcefield.doc -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/aminoacids.c.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/ions.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/aminoacids.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/spc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/tip4p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/ffnonbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/ffbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/spce.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/watermodels.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/forcefield.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/aminoacids.n.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/ff_dum.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/ffG53a5.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/atommass.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/ffG43a2.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/bonds.dlg -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/dgsolv.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/README -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/sfactor.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/atom_nom.tbl -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/table6-11.xvg -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/dna.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/aminoacids.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/atomtypes.atp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/aminoacids.vsd -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/rna.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/aminoacids.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/rna.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/aminoacids.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/tip3p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/tip4pew.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/forcefield.doc -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/aminoacids.c.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/ions.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/urea.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/rna.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/tip5p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/dna.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/aminoacids.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/dna.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/spc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/tip4p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/dna.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/ffnonbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/ffbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/rna.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/spce.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/watermodels.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/forcefield.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/aminoacids.n.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/residuetypes.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/specbond.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/dna.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/aminoacids.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/atomtypes.atp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/aminoacids.vsd -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/rna.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/aminoacids.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/rna.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/aminoacids.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/tip3p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/tip4pew.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/forcefield.doc -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/aminoacids.c.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/ions.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/urea.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/rna.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/tip5p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/dna.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/aminoacids.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/dna.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/spc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/tip4p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/dna.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/ffnonbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/ffbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/rna.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/spce.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/watermodels.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/forcefield.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/aminoacids.n.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/atomtypes.atp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/aminoacids.vsd -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/aminoacids.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/ethanol.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/methanol.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/aminoacids.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/1propanol.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/tip3p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/tip4pew.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/forcefield.doc -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/aminoacids.c.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/ions.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/tip5p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/aminoacids.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/tip5pe.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/spc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/tip4p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/atomname2type.n2t -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/ffnonbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/ffbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/spce.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/watermodels.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/forcefield.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/aminoacids.n.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/scatteringfactors.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/flexwat-ferguson.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/atomtypes.atp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/aminoacids.vsd -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/aminoacids.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/aminoacids.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/tip3p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/forcefield.doc -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/aminoacids.c.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/ions.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/aminoacids.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/spc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/tip4p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/atomname2type.n2t -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/ffnonbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/ffbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/spce.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/watermodels.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/forcefield.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/aminoacids.n.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/ff_dum.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/atomtypes.atp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/aminoacids.vsd -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/aminoacids.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/aminoacids.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/tip3p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/forcefield.doc -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/aminoacids.c.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/ions.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/aminoacids.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/spc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/tip4p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/ffnonbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/ffbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/spce.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/watermodels.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/forcefield.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/aminoacids.n.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/ff_dum.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/table6-8.xvg -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/atomtypes.atp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/ions_opc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/aminoacids.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/ions_opc3.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/ions_tip3p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/aminoacids.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/opc3.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/tip3p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/tip4pew.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/forcefield.doc -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/aminoacids.c.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/ions_spc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/ions_tip4pew.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/ions_spce.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/aminoacids.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/opc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/spc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/ffnonbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/ffbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/spce.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/watermodels.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/forcefield.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/aminoacids.n.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/ps.m2p -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/cb-shift.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/tip3p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/ffG45a3.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/flexspc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/dna.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/aminoacids.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/atomtypes.atp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/aminoacids.vsd -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/rna.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/aminoacids.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/rna.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/aminoacids.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/tip3p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/tip4pew.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/forcefield.doc -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/aminoacids.c.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/ions.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/urea.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/rna.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/tip5p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/dna.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/aminoacids.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/dna.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/spc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/tip4p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/dna.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/ffnonbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/ffbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/rna.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/spce.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/watermodels.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/forcefield.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/aminoacids.n.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/electroneg.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/random.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/sw.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/dna.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/aminoacids.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/atomtypes.atp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/rna.c.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/cmap.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/aminoacids.vsd -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/rna.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/aminoacids.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/ffnabonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/rna.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/aminoacids.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/dna.c.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/tip3p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/rna.n.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/lipids.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/forcefield.doc -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/aminoacids.c.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/ions.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/rna.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/tip5p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/aminoacids.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/tips3p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/dna.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/spc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/tip4p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/dna.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/ffnonbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/lipids.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/ffnanonbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/ffbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/rna.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/spce.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/watermodels.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/forcefield.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/dna.n.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/aminoacids.n.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/table6-10.xvg -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/ions.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/atomtypes.atp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/aminoacids.vsd -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/aminoacids.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/dppc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/aminoacids.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/tip3p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/forcefield.doc -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/aminoacids.c.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/ions.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/aminoacids.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/popc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/tmcl.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/spc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/tip4p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/ffnonbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/ffbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/spce.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/watermodels.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/forcefield.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/aminoacids.n.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/ff_dum.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/dna.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/aminoacids.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/atomtypes.atp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/aminoacids.vsd -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/rna.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/aminoacids.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/rna.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/aminoacids.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/tip3p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/tip4pew.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/forcefield.doc -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/aminoacids.c.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/ions.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/urea.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/rna.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/tip5p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/dna.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/aminoacids.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/dna.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/spc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/tip4p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/dna.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/ffnonbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/ffbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/rna.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/spce.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/watermodels.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/forcefield.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/aminoacids.n.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/dna.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/aminoacids.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/atomtypes.atp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/aminoacids.vsd -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/rna.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/aminoacids.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/rna.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/aminoacids.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/tip3p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/tip4pew.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/forcefield.doc -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/aminoacids.c.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/ions.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/urea.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/rna.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/tip5p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/dna.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/aminoacids.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/dna.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/spc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/tip4p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/dna.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/ffnonbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/ffbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/rna.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/spce.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/watermodels.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/forcefield.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/aminoacids.n.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/ffoplsaa-n.tst -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/atomtypes.atp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/ions_opc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/cmap.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/aminoacids.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/ions_opc3.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/ions_tip3p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/aminoacids.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/opc3.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/tip3p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/tip4pew.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/forcefield.doc -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/aminoacids.c.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/ions_spc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/ions_tip4pew.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/ions_spce.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/aminoacids.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/opc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/spc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/ffnonbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/ffbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/spce.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/watermodels.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/forcefield.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/aminoacids.n.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/ffG53a6.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/vdwradii.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/atomtypes.atp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/aminoacids.vsd -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/aminoacids.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/aminoacids.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/tip3p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/forcefield.doc -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/aminoacids.c.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/ions.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/aminoacids.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/spc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/tip4p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/ffnonbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/ffbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/spce.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/watermodels.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/forcefield.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/aminoacids.n.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/ff_dum.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/ss.map -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/table6-9.xvg -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/flexspce.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/spc216.gro -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/spc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/tip4p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/ca-shift.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/phbres.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/co-shift.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/elements.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/dna.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/aminoacids.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/atomtypes.atp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/aminoacids.vsd -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/rna.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/aminoacids.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/rna.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/aminoacids.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/tip3p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/tip4pew.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/forcefield.doc -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/aminoacids.c.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/ions.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/urea.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/rna.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/tip5p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/dna.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/aminoacids.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/dna.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/spc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/tip4p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/dna.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/ffnonbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/ffbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/rna.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/spce.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/watermodels.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/forcefield.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/aminoacids.n.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/edissoc.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/table6-12.xvg -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/ffG43a1.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/spce.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/ha-shift.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/xlateat.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/tip5p.gro -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/atomtypes.atp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/aminoacids.vsd -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/aminoacids.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/methanol.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/methanol216.gro -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/aminoacids.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/tip3p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/forcefield.doc -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/aminoacids.c.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/ions.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/aminoacids.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/spc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/tip4p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/ffnonbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/ffbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/spce.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/watermodels.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/forcefield.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/aminoacids.n.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/ff_dum.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/ffoplsaa.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/lib64/openmpi/bin/GMXRC -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/lib64/openmpi/bin/GMXRC.bash -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/lib64/openmpi/bin/GMXRC.zsh -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/lib64/openmpi/bin/GMXRC.csh -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/lib64/openmpi/bin/demux.pl -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/lib64/openmpi/bin/xplor2gmx.pl -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/restraint -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/restraint/restraintpotential.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/fileio -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/fileio/tpxio.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/fileio/filetypes.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/fileio/pdbio.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/fileio/oenv.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/fileio/trxio.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/fileio/confio.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/topology -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/topology/atomprop.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/topology/forcefieldparameters.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/topology/ifunc.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/topology/topology.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/topology/index.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/topology/block.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/topology/idef.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/topology/symtab.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/topology/topology_enums.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/topology/atoms.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/trajectoryanalysis -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/trajectoryanalysis/cmdlinerunner.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/trajectoryanalysis/analysissettings.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/trajectoryanalysis/analysismodule.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/trajectoryanalysis/topologyinformation.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/math -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/math/do_fit.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/math/units.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/math/functions.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/math/utilities.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/trajectory -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/trajectory/trajectoryframe.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/pbcutil -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/pbcutil/pbc.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/mdtypes -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/mdtypes/md_enums.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/mdtypes/inputrec.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/selection -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/selection/selectionoption.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/selection/indexutil.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/selection/position.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/selection/selectioncollection.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/selection/selectionenums.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/selection/selection.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/selection/nbsearch.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/selection/selectionoptionbehavior.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/selection/selectionoptionmanager.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/vec.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/real.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/programcontext.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/unique_cptr.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/range.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/fileptr.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/enumerationhelpers.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/arrayref.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/current_function.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/classhelpers.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/baseversion.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/basedefinitions.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/listoflists.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/stringutil.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/exceptions.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/smalloc.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/pleasecite.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/futil.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/flags.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/vectypes.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/gmxassert.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/analysisdata -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/analysisdata/dataframe.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/analysisdata/abstractdata.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/analysisdata/arraydata.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/analysisdata/modules -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/analysisdata/modules/lifetime.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/analysisdata/modules/plot.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/analysisdata/modules/displacement.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/analysisdata/modules/average.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/analysisdata/modules/histogram.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/analysisdata/datamodule.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/analysisdata/analysisdata.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/options -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/options/optionfiletype.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/options/basicoptions.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/options/filenameoptionmanager.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/options/ivaluestore.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/options/ioptionscontainer.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/options/ioptionsbehavior.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/options/optionflags.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/options/filenameoption.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/options/timeunitmanager.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/options/ioptionscontainerwithsections.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/options/abstractoption.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/options/options.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/version.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/libgromacs_export.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/external/boost/stl_interfaces/fwd.hpp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/external/boost/stl_interfaces/iterator_interface.hpp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/mdrun/simulationinputhandle.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/gpu_utils/device_utils.clh -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/gpu_utils/vectype_ops.clh -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/nbnxm/opencl/nbnxm_ocl_consts.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/nbnxm/opencl/nbnxm_ocl_kernel.clh -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/nbnxm/opencl/nbnxm_ocl_kernel_pruneonly.clh -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/nbnxm/opencl/nbnxm_ocl_kernel_utils.clh -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/nbnxm/opencl/nbnxm_ocl_kernels.cl -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/nbnxm/opencl/nbnxm_ocl_kernels.clh -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/nbnxm/opencl/nbnxm_ocl_kernels_fastgen.clh -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/nbnxm/opencl/nbnxm_ocl_kernels_fastgen_add_twincut.clh -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/ewald/pme_gather.clh -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/ewald/pme_gpu_calculate_splines.clh -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/ewald/pme_gpu_types.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/ewald/pme_program.cl -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/ewald/pme_solve.clh -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/ewald/pme_spread.clh -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/lib64/openmpi/bin/gmx_openmpi -- Set non-toolchain portion of runtime path of "/builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/lib64/openmpi/bin/gmx_openmpi" to "" -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/lib64/openmpi/bin -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/lib64/openmpi/bin/gmx-completion.bash -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/lib64/openmpi/bin/gmx-completion-gmx_openmpi.bash -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-nmr.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-densmap.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-saltbr.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-grompp.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-dyecoupl.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-x2top.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-msd.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-gyrate-legacy.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-gangle.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-extract-cluster.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-pdb2gmx.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-check.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-rotmat.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-bundle.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-nmeig.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-energy.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-dipoles.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-vanhove.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-eneconv.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-sorient.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-chi.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-genion.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-principal.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-polystat.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-sham.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-sans-legacy.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-rotacf.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-dump.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-saxs-legacy.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-covar.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-solvate.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-spatial.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-rmsf.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-report-methods.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-confrms.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-genrestr.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-trajectory.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-rdf.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-wham.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-tune_pme.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-dos.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-enemat.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-nonbonded-benchmark.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-rama.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-dielectric.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-wheel.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-trjorder.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-mdmat.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-helix.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-mindist.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-pme_error.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-density.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-hbond-legacy.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-pairdist.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-tcaf.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-traj.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-sigeps.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-xpm2ps.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-gyrate.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-velacc.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-hbond.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-helixorient.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-freevolume.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-order.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-lie.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-sasa.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-trjconv.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-scattering.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-mk_angndx.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-clustsize.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-dssp.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-convert-tpr.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-nmtraj.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-bar.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-convert-trj.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-current.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-rms.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-mdrun.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-awh.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-cluster.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-make_edi.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-h2order.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-potential.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-analyze.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-angle.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-spol.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-insert-molecules.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-distance.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-anaeig.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-densorder.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-make_ndx.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-help.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-nmens.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-editconf.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-trjcat.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-genconf.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-rmsdist.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-select.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-filter.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-hydorder.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-disre.1 + popd ~/build/BUILD/gromacs-2026.3-build/gromacs-2026.3 + test -n openmpi + module unload mpi/openmpi-aarch64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw unload mpi/openmpi-aarch64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh unload mpi/openmpi-aarch64 + eval $'unset MPI_COMPILER;\nunset LD_LIBRARY_PATH;\nunset MPI_MAN;\nMANPATH=\'/usr/share/man:\'; export MANPATH;\nunset MPI_INCLUDE;\nunset _LMFILES_;\nunset LOADEDMODULES;\nunset CMAKE_PREFIX_PATH;\nPKG_CONFIG_PATH=\':/usr/lib64/pkgconfig:/usr/share/pkgconfig\'; export PKG_CONFIG_PATH;\nunset MPI_PYTHON3_SITEARCH;\nunset MPI_HOME;\nunset MPI_FORTRAN_MOD_DIR;\nunset __MODULES_LMALTNAME;\nunset __MODULES_LMCONFLICT;\n__MODULES_SHARE_MANPATH=\':1\'; export __MODULES_SHARE_MANPATH;\nunset MPI_SUFFIX;\nunset MPI_SYSCONFIG;\n__MODULES_SHARE_PKG_CONFIG_PATH=\':1\'; export __MODULES_SHARE_PKG_CONFIG_PATH;\nunset MPI_LIB;\nPATH=\'/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin\'; export PATH;\nunset MPI_BIN;\ntest 0;' ++ unset MPI_COMPILER ++ unset LD_LIBRARY_PATH ++ unset MPI_MAN ++ MANPATH=/usr/share/man: ++ export MANPATH ++ unset MPI_INCLUDE ++ unset _LMFILES_ ++ unset LOADEDMODULES ++ unset CMAKE_PREFIX_PATH ++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_HOME ++ unset MPI_FORTRAN_MOD_DIR ++ unset __MODULES_LMALTNAME ++ unset __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:1 ++ export __MODULES_SHARE_MANPATH ++ unset MPI_SUFFIX ++ unset MPI_SYSCONFIG ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ unset MPI_LIB ++ PATH=/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin ++ export PATH ++ unset MPI_BIN ++ test 0 + _mlstatus=0 + return 0 ~/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d ~/build/BUILD/gromacs-2026.3-build/gromacs-2026.3 + for p in '' _d + for mpi in '' mpich openmpi + test -n '' + pushd serial_d + DESTDIR=/builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT + /usr/bin/cmake --install redhat-linux-build -- Install configuration: "Release" -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/COPYING -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/template/CMakeLists.txt -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/template/README -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/template/template.cpp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/template/Makefile.pkg -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/template/cmake/FindGROMACS.cmake -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/README.tutor -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/README_FreeEnergyModifications.txt -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/dna.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/aminoacids.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/atomtypes.atp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/aminoacids.vsd -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/rna.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/aminoacids.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/rna.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/aminoacids.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/tip3p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/tip4pew.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/forcefield.doc -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/aminoacids.c.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/ions.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/urea.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/rna.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/tip5p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/dna.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/aminoacids.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/dna.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/spc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/tip4p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/dna.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/ffnonbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/ffbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/rna.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/spce.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/watermodels.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/forcefield.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/aminoacids.n.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/nsfactor.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/tip4p.gro -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/atomtypes.atp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/aminoacids.vsd -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/aminoacids.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/aminoacids.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/tip3p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/forcefield.doc -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/aminoacids.c.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/ions.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/aminoacids.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/spc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/tip4p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/ffnonbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/ffbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/spce.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/watermodels.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/forcefield.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/aminoacids.n.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/ff_dum.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/ffG53a5.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/atommass.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/ffG43a2.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/bonds.dlg -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/dgsolv.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/README -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/sfactor.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/atom_nom.tbl -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/table6-11.xvg -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/dna.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/aminoacids.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/atomtypes.atp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/aminoacids.vsd -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/rna.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/aminoacids.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/rna.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/aminoacids.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/tip3p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/tip4pew.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/forcefield.doc -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/aminoacids.c.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/ions.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/urea.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/rna.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/tip5p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/dna.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/aminoacids.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/dna.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/spc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/tip4p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/dna.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/ffnonbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/ffbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/rna.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/spce.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/watermodels.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/forcefield.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/aminoacids.n.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/residuetypes.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/specbond.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/dna.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/aminoacids.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/atomtypes.atp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/aminoacids.vsd -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/rna.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/aminoacids.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/rna.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/aminoacids.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/tip3p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/tip4pew.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/forcefield.doc -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/aminoacids.c.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/ions.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/urea.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/rna.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/tip5p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/dna.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/aminoacids.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/dna.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/spc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/tip4p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/dna.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/ffnonbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/ffbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/rna.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/spce.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/watermodels.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/forcefield.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/aminoacids.n.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/atomtypes.atp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/aminoacids.vsd -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/aminoacids.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/ethanol.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/methanol.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/aminoacids.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/1propanol.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/tip3p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/tip4pew.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/forcefield.doc -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/aminoacids.c.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/ions.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/tip5p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/aminoacids.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/tip5pe.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/spc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/tip4p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/atomname2type.n2t -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/ffnonbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/ffbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/spce.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/watermodels.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/forcefield.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/aminoacids.n.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/scatteringfactors.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/flexwat-ferguson.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/atomtypes.atp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/aminoacids.vsd -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/aminoacids.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/aminoacids.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/tip3p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/forcefield.doc -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/aminoacids.c.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/ions.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/aminoacids.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/spc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/tip4p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/atomname2type.n2t -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/ffnonbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/ffbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/spce.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/watermodels.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/forcefield.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/aminoacids.n.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/ff_dum.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/atomtypes.atp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/aminoacids.vsd -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/aminoacids.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/aminoacids.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/tip3p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/forcefield.doc -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/aminoacids.c.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/ions.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/aminoacids.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/spc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/tip4p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/ffnonbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/ffbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/spce.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/watermodels.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/forcefield.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/aminoacids.n.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/ff_dum.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/table6-8.xvg -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/atomtypes.atp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/ions_opc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/aminoacids.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/ions_opc3.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/ions_tip3p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/aminoacids.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/opc3.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/tip3p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/tip4pew.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/forcefield.doc -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/aminoacids.c.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/ions_spc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/ions_tip4pew.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/ions_spce.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/aminoacids.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/opc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/spc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/ffnonbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/ffbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/spce.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/watermodels.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/forcefield.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/aminoacids.n.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/ps.m2p -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/cb-shift.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/tip3p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/ffG45a3.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/flexspc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/dna.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/aminoacids.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/atomtypes.atp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/aminoacids.vsd -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/rna.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/aminoacids.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/rna.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/aminoacids.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/tip3p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/tip4pew.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/forcefield.doc -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/aminoacids.c.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/ions.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/urea.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/rna.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/tip5p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/dna.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/aminoacids.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/dna.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/spc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/tip4p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/dna.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/ffnonbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/ffbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/rna.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/spce.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/watermodels.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/forcefield.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/aminoacids.n.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/electroneg.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/random.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/sw.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/dna.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/aminoacids.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/atomtypes.atp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/rna.c.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/cmap.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/aminoacids.vsd -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/rna.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/aminoacids.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/ffnabonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/rna.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/aminoacids.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/dna.c.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/tip3p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/rna.n.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/lipids.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/forcefield.doc -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/aminoacids.c.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/ions.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/rna.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/tip5p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/aminoacids.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/tips3p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/dna.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/spc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/tip4p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/dna.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/ffnonbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/lipids.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/ffnanonbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/ffbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/rna.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/spce.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/watermodels.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/forcefield.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/dna.n.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/aminoacids.n.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/table6-10.xvg -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/ions.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/atomtypes.atp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/aminoacids.vsd -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/aminoacids.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/dppc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/aminoacids.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/tip3p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/forcefield.doc -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/aminoacids.c.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/ions.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/aminoacids.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/popc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/tmcl.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/spc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/tip4p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/ffnonbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/ffbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/spce.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/watermodels.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/forcefield.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/aminoacids.n.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/ff_dum.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/dna.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/aminoacids.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/atomtypes.atp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/aminoacids.vsd -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/rna.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/aminoacids.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/rna.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/aminoacids.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/tip3p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/tip4pew.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/forcefield.doc -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/aminoacids.c.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/ions.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/urea.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/rna.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/tip5p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/dna.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/aminoacids.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/dna.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/spc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/tip4p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/dna.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/ffnonbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/ffbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/rna.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/spce.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/watermodels.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/forcefield.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/aminoacids.n.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/dna.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/aminoacids.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/atomtypes.atp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/aminoacids.vsd -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/rna.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/aminoacids.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/rna.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/aminoacids.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/tip3p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/tip4pew.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/forcefield.doc -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/aminoacids.c.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/ions.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/urea.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/rna.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/tip5p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/dna.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/aminoacids.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/dna.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/spc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/tip4p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/dna.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/ffnonbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/ffbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/rna.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/spce.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/watermodels.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/forcefield.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/aminoacids.n.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/ffoplsaa-n.tst -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/atomtypes.atp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/ions_opc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/cmap.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/aminoacids.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/ions_opc3.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/ions_tip3p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/aminoacids.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/opc3.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/tip3p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/tip4pew.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/forcefield.doc -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/aminoacids.c.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/ions_spc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/ions_tip4pew.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/ions_spce.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/aminoacids.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/opc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/spc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/ffnonbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/ffbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/spce.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/watermodels.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/forcefield.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/aminoacids.n.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/ffG53a6.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/vdwradii.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/atomtypes.atp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/aminoacids.vsd -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/aminoacids.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/aminoacids.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/tip3p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/forcefield.doc -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/aminoacids.c.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/ions.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/aminoacids.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/spc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/tip4p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/ffnonbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/ffbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/spce.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/watermodels.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/forcefield.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/aminoacids.n.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/ff_dum.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/ss.map -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/table6-9.xvg -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/flexspce.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/spc216.gro -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/spc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/tip4p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/ca-shift.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/phbres.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/co-shift.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/elements.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/dna.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/aminoacids.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/atomtypes.atp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/aminoacids.vsd -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/rna.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/aminoacids.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/rna.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/aminoacids.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/tip3p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/tip4pew.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/forcefield.doc -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/aminoacids.c.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/ions.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/urea.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/rna.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/tip5p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/dna.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/aminoacids.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/dna.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/spc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/tip4p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/dna.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/ffnonbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/ffbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/rna.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/spce.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/watermodels.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/forcefield.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/aminoacids.n.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/edissoc.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/table6-12.xvg -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/ffG43a1.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/spce.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/ha-shift.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/xlateat.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/tip5p.gro -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/atomtypes.atp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/aminoacids.vsd -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/aminoacids.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/methanol.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/methanol216.gro -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/aminoacids.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/tip3p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/forcefield.doc -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/aminoacids.c.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/ions.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/aminoacids.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/spc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/tip4p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/ffnonbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/ffbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/spce.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/watermodels.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/forcefield.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/aminoacids.n.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/ff_dum.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/ffoplsaa.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/bin/GMXRC -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/bin/GMXRC.bash -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/bin/GMXRC.zsh -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/bin/GMXRC.csh -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/bin/demux.pl -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/bin/xplor2gmx.pl -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/restraint -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/restraint/restraintpotential.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/fileio -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/fileio/tpxio.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/fileio/filetypes.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/fileio/pdbio.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/fileio/oenv.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/fileio/trxio.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/fileio/confio.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/topology -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/topology/atomprop.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/topology/forcefieldparameters.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/topology/ifunc.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/topology/topology.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/topology/index.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/topology/block.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/topology/idef.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/topology/symtab.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/topology/topology_enums.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/topology/atoms.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/trajectoryanalysis -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/trajectoryanalysis/cmdlinerunner.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/trajectoryanalysis/analysissettings.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/trajectoryanalysis/analysismodule.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/trajectoryanalysis/topologyinformation.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/math -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/math/do_fit.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/math/units.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/math/functions.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/math/utilities.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/trajectory -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/trajectory/trajectoryframe.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/pbcutil -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/pbcutil/pbc.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/mdtypes -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/mdtypes/md_enums.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/mdtypes/inputrec.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/selection -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/selection/selectionoption.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/selection/indexutil.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/selection/position.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/selection/selectioncollection.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/selection/selectionenums.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/selection/selection.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/selection/nbsearch.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/selection/selectionoptionbehavior.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/selection/selectionoptionmanager.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/vec.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/real.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/programcontext.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/unique_cptr.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/range.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/fileptr.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/enumerationhelpers.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/arrayref.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/current_function.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/classhelpers.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/baseversion.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/basedefinitions.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/listoflists.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/stringutil.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/exceptions.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/smalloc.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/pleasecite.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/futil.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/flags.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/vectypes.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/gmxassert.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/analysisdata -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/analysisdata/dataframe.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/analysisdata/abstractdata.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/analysisdata/arraydata.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/analysisdata/modules -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/analysisdata/modules/lifetime.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/analysisdata/modules/plot.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/analysisdata/modules/displacement.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/analysisdata/modules/average.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/analysisdata/modules/histogram.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/analysisdata/datamodule.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/analysisdata/analysisdata.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/options -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/options/optionfiletype.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/options/basicoptions.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/options/filenameoptionmanager.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/options/ivaluestore.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/options/ioptionscontainer.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/options/ioptionsbehavior.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/options/optionflags.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/options/filenameoption.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/options/timeunitmanager.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/options/ioptionscontainerwithsections.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/options/abstractoption.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/options/options.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/version.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/libgromacs_export.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/lib64/libgmxapi_d.so.0.4.0 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/lib64/libgmxapi_d.so.0 -- Set non-toolchain portion of runtime path of "/builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/lib64/libgmxapi_d.so.0.4.0" to "" -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/lib64/libgmxapi_d.so -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/cmake/gmxapi/gmxapi.cmake -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/cmake/gmxapi/gmxapi-release.cmake -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/cmake/gmxapi/gmxapi-config-version.cmake -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/cmake/gmxapi/gmxapi-config.cmake -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gmxapi -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gmxapi/compat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gmxapi/compat/tpr.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gmxapi/compat/mdparams.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gmxapi/session.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gmxapi/system.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gmxapi/session -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gmxapi/session/resources.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gmxapi/gromacsfwd.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gmxapi/status.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gmxapi/md -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gmxapi/md/mdmodule.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gmxapi/md/mdsignals.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gmxapi/md.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gmxapi/gmxapicompat.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gmxapi/exceptions.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gmxapi/mpi -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gmxapi/mpi/gmxapi_mpi.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gmxapi/gmxapi.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gmxapi/context.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gmxapi/version.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gmxapi/mpi/resourceassignment.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/lib64/libnblib_gmx.so.0.1.0 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/lib64/libnblib_gmx.so.0 -- Set non-toolchain portion of runtime path of "/builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/lib64/libnblib_gmx.so.0.1.0" to "" -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/lib64/libnblib_gmx.so -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/nblib -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/nblib/box.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/nblib/exception.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/nblib/simulationstate.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/nblib/molecules.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/nblib/listed_forces -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/nblib/listed_forces/definitions.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/nblib/listed_forces/calculator.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/nblib/listed_forces/bondtypes.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/nblib/nblib.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/nblib/tpr.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/nblib/kerneloptions.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/nblib/particletype.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/nblib/particlesequencer.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/nblib/nbnxmsetuphelpers.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/nblib/gmxcalculatorcpu.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/nblib/topology.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/nblib/basicdefinitions.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/nblib/interactions.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/nblib/util -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/nblib/util/util.hpp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/nblib/util/traits.hpp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/nblib/util/setup.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/nblib/integrator.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/nblib/vector.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/external/boost/stl_interfaces/fwd.hpp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/external/boost/stl_interfaces/iterator_interface.hpp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/mdrun/simulationinputhandle.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/lib64/libgromacs_d.so.11.0.0 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/lib64/libgromacs_d.so.11 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/lib64/libgromacs_d.so -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/lib64/pkgconfig/libgromacs_d.pc -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/cmake/gromacs_d/libgromacs.cmake -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/cmake/gromacs_d/libgromacs-release.cmake -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/cmake/gromacs_d/gromacs_d-config.cmake -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/cmake/gromacs_d/gromacs_d-config-version.cmake -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/cmake/gromacs_d/gromacs-hints_d.cmake -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/bin/gmx_d -- Set non-toolchain portion of runtime path of "/builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/bin/gmx_d" to "" -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/bin -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/bin/gmx-completion.bash -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/bin/gmx-completion-gmx_d.bash -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-nmr.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-densmap.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-saltbr.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-grompp.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-dyecoupl.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-x2top.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-msd.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-gyrate-legacy.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-gangle.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-extract-cluster.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-pdb2gmx.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-check.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-rotmat.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-bundle.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-nmeig.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-energy.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-dipoles.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-vanhove.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-eneconv.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-sorient.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-chi.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-genion.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-principal.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-polystat.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-sham.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-sans-legacy.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-rotacf.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-dump.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-saxs-legacy.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-covar.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-solvate.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-spatial.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-rmsf.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-report-methods.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-confrms.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-genrestr.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-trajectory.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-rdf.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-wham.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-tune_pme.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-dos.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-enemat.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-nonbonded-benchmark.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-rama.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-dielectric.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-wheel.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-trjorder.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-mdmat.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-helix.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-mindist.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-pme_error.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-density.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-hbond-legacy.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-pairdist.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-tcaf.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-traj.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-sigeps.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-xpm2ps.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-gyrate.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-velacc.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-hbond.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-helixorient.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-freevolume.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-order.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-lie.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-sasa.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-trjconv.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-scattering.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-mk_angndx.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-clustsize.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-dssp.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-convert-tpr.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-nmtraj.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-bar.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-convert-trj.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-current.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-rms.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-mdrun.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-awh.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-cluster.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-make_edi.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-h2order.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-potential.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-analyze.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-angle.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-spol.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-insert-molecules.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-distance.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-anaeig.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-densorder.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-make_ndx.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-help.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-nmens.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-editconf.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-trjcat.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-genconf.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-rmsdist.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-select.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-filter.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-hydorder.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-disre.1 + popd ~/build/BUILD/gromacs-2026.3-build/gromacs-2026.3 + test -n '' + for mpi in '' mpich openmpi + test -n mpich + module load mpi/mpich-aarch64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw load mpi/mpich-aarch64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh load mpi/mpich-aarch64 + eval $'LD_LIBRARY_PATH=\'/usr/lib64/mpich/lib\'; export LD_LIBRARY_PATH;\nMPI_COMPILER=\'mpich-aarch64\'; export MPI_COMPILER;\nMANPATH=\'/usr/share/man/mpich-aarch64:/usr/share/man:\'; export MANPATH;\nMPI_INCLUDE=\'/usr/include/mpich-aarch64\'; export MPI_INCLUDE;\nMPI_MAN=\'/usr/share/man/mpich-aarch64\'; export MPI_MAN;\nMPI_PYTHON_SITEARCH=\'%{python2_sitearch}/mpich\'; export MPI_PYTHON_SITEARCH;\n_LMFILES_=\'/usr/share/modulefiles/mpi/mpich-aarch64\'; export _LMFILES_;\nLOADEDMODULES=\'mpi/mpich-aarch64\'; export LOADEDMODULES;\nCMAKE_PREFIX_PATH=\'/usr/lib64/mpich\'; export CMAKE_PREFIX_PATH;\nPKG_CONFIG_PATH=\'/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig\'; export PKG_CONFIG_PATH;\nMPI_PYTHON3_SITEARCH=\'/usr/lib64/python3.15/site-packages/mpich\'; export MPI_PYTHON3_SITEARCH;\nMPI_FORTRAN_MOD_DIR=\'/usr/lib64/gfortran/modules/mpich\'; export MPI_FORTRAN_MOD_DIR;\nMPI_HOME=\'/usr/lib64/mpich\'; export MPI_HOME;\n__MODULES_LMCONFLICT=\'mpi/mpich-aarch64&mpi\'; export __MODULES_LMCONFLICT;\n__MODULES_SHARE_MANPATH=\':2\'; export __MODULES_SHARE_MANPATH;\nMPI_SYSCONFIG=\'/etc/mpich-aarch64\'; export MPI_SYSCONFIG;\nMPI_SUFFIX=\'_mpich\'; export MPI_SUFFIX;\n__MODULES_SHARE_PKG_CONFIG_PATH=\':1\'; export __MODULES_SHARE_PKG_CONFIG_PATH;\nMPI_PYTHON2_SITEARCH=\'%{python2_sitearch}/mpich\'; export MPI_PYTHON2_SITEARCH;\nMPI_LIB=\'/usr/lib64/mpich/lib\'; export MPI_LIB;\nPATH=\'/usr/lib64/mpich/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin\'; export PATH;\nMPI_BIN=\'/usr/lib64/mpich/bin\'; export MPI_BIN;\ntest 0;' ++ LD_LIBRARY_PATH=/usr/lib64/mpich/lib ++ export LD_LIBRARY_PATH ++ MPI_COMPILER=mpich-aarch64 ++ export MPI_COMPILER ++ MANPATH=/usr/share/man/mpich-aarch64:/usr/share/man: ++ export MANPATH ++ MPI_INCLUDE=/usr/include/mpich-aarch64 ++ export MPI_INCLUDE ++ MPI_MAN=/usr/share/man/mpich-aarch64 ++ export MPI_MAN ++ MPI_PYTHON_SITEARCH='%{python2_sitearch}/mpich' ++ export MPI_PYTHON_SITEARCH ++ _LMFILES_=/usr/share/modulefiles/mpi/mpich-aarch64 ++ export _LMFILES_ ++ LOADEDMODULES=mpi/mpich-aarch64 ++ export LOADEDMODULES ++ CMAKE_PREFIX_PATH=/usr/lib64/mpich ++ export CMAKE_PREFIX_PATH ++ PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.15/site-packages/mpich ++ export MPI_PYTHON3_SITEARCH ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich ++ export MPI_FORTRAN_MOD_DIR ++ MPI_HOME=/usr/lib64/mpich ++ export MPI_HOME ++ __MODULES_LMCONFLICT='mpi/mpich-aarch64&mpi' ++ export __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:2 ++ export __MODULES_SHARE_MANPATH ++ MPI_SYSCONFIG=/etc/mpich-aarch64 ++ export MPI_SYSCONFIG ++ MPI_SUFFIX=_mpich ++ export MPI_SUFFIX ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ MPI_PYTHON2_SITEARCH='%{python2_sitearch}/mpich' ++ export MPI_PYTHON2_SITEARCH ++ MPI_LIB=/usr/lib64/mpich/lib ++ export MPI_LIB ++ PATH=/usr/lib64/mpich/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin ++ export PATH ++ MPI_BIN=/usr/lib64/mpich/bin ++ export MPI_BIN ++ test 0 ~/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d ~/build/BUILD/gromacs-2026.3-build/gromacs-2026.3 + _mlstatus=0 + return 0 + pushd mpich_d + DESTDIR=/builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT + /usr/bin/cmake --install redhat-linux-build -- Install configuration: "Release" -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/COPYING -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/template/CMakeLists.txt -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/template/README -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/template/template.cpp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/template/Makefile.pkg -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/template/cmake/FindGROMACS.cmake -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/README.tutor -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/README_FreeEnergyModifications.txt -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/dna.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/aminoacids.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/atomtypes.atp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/aminoacids.vsd -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/rna.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/aminoacids.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/rna.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/aminoacids.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/tip3p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/tip4pew.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/forcefield.doc -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/aminoacids.c.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/ions.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/urea.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/rna.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/tip5p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/dna.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/aminoacids.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/dna.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/spc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/tip4p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/dna.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/ffnonbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/ffbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/rna.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/spce.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/watermodels.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/forcefield.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/aminoacids.n.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/nsfactor.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/tip4p.gro -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/atomtypes.atp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/aminoacids.vsd -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/aminoacids.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/aminoacids.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/tip3p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/forcefield.doc -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/aminoacids.c.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/ions.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/aminoacids.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/spc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/tip4p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/ffnonbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/ffbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/spce.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/watermodels.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/forcefield.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/aminoacids.n.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/ff_dum.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/ffG53a5.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/atommass.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/ffG43a2.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/bonds.dlg -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/dgsolv.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/README -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/sfactor.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/atom_nom.tbl -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/table6-11.xvg -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/dna.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/aminoacids.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/atomtypes.atp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/aminoacids.vsd -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/rna.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/aminoacids.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/rna.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/aminoacids.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/tip3p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/tip4pew.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/forcefield.doc -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/aminoacids.c.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/ions.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/urea.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/rna.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/tip5p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/dna.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/aminoacids.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/dna.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/spc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/tip4p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/dna.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/ffnonbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/ffbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/rna.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/spce.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/watermodels.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/forcefield.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/aminoacids.n.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/residuetypes.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/specbond.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/dna.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/aminoacids.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/atomtypes.atp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/aminoacids.vsd -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/rna.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/aminoacids.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/rna.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/aminoacids.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/tip3p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/tip4pew.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/forcefield.doc -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/aminoacids.c.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/ions.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/urea.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/rna.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/tip5p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/dna.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/aminoacids.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/dna.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/spc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/tip4p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/dna.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/ffnonbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/ffbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/rna.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/spce.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/watermodels.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/forcefield.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/aminoacids.n.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/atomtypes.atp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/aminoacids.vsd -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/aminoacids.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/ethanol.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/methanol.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/aminoacids.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/1propanol.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/tip3p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/tip4pew.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/forcefield.doc -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/aminoacids.c.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/ions.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/tip5p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/aminoacids.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/tip5pe.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/spc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/tip4p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/atomname2type.n2t -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/ffnonbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/ffbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/spce.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/watermodels.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/forcefield.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/aminoacids.n.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/scatteringfactors.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/flexwat-ferguson.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/atomtypes.atp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/aminoacids.vsd -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/aminoacids.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/aminoacids.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/tip3p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/forcefield.doc -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/aminoacids.c.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/ions.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/aminoacids.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/spc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/tip4p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/atomname2type.n2t -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/ffnonbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/ffbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/spce.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/watermodels.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/forcefield.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/aminoacids.n.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/ff_dum.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/atomtypes.atp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/aminoacids.vsd -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/aminoacids.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/aminoacids.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/tip3p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/forcefield.doc -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/aminoacids.c.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/ions.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/aminoacids.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/spc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/tip4p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/ffnonbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/ffbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/spce.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/watermodels.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/forcefield.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/aminoacids.n.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/ff_dum.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/table6-8.xvg -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/atomtypes.atp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/ions_opc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/aminoacids.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/ions_opc3.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/ions_tip3p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/aminoacids.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/opc3.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/tip3p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/tip4pew.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/forcefield.doc -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/aminoacids.c.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/ions_spc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/ions_tip4pew.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/ions_spce.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/aminoacids.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/opc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/spc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/ffnonbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/ffbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/spce.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/watermodels.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/forcefield.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/aminoacids.n.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/ps.m2p -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/cb-shift.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/tip3p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/ffG45a3.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/flexspc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/dna.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/aminoacids.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/atomtypes.atp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/aminoacids.vsd -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/rna.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/aminoacids.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/rna.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/aminoacids.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/tip3p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/tip4pew.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/forcefield.doc -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/aminoacids.c.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/ions.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/urea.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/rna.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/tip5p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/dna.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/aminoacids.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/dna.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/spc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/tip4p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/dna.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/ffnonbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/ffbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/rna.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/spce.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/watermodels.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/forcefield.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/aminoacids.n.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/electroneg.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/random.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/sw.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/dna.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/aminoacids.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/atomtypes.atp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/rna.c.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/cmap.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/aminoacids.vsd -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/rna.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/aminoacids.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/ffnabonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/rna.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/aminoacids.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/dna.c.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/tip3p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/rna.n.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/lipids.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/forcefield.doc -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/aminoacids.c.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/ions.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/rna.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/tip5p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/aminoacids.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/tips3p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/dna.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/spc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/tip4p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/dna.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/ffnonbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/lipids.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/ffnanonbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/ffbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/rna.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/spce.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/watermodels.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/forcefield.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/dna.n.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/aminoacids.n.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/table6-10.xvg -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/ions.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/atomtypes.atp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/aminoacids.vsd -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/aminoacids.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/dppc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/aminoacids.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/tip3p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/forcefield.doc -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/aminoacids.c.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/ions.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/aminoacids.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/popc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/tmcl.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/spc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/tip4p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/ffnonbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/ffbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/spce.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/watermodels.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/forcefield.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/aminoacids.n.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/ff_dum.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/dna.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/aminoacids.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/atomtypes.atp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/aminoacids.vsd -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/rna.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/aminoacids.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/rna.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/aminoacids.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/tip3p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/tip4pew.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/forcefield.doc -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/aminoacids.c.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/ions.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/urea.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/rna.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/tip5p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/dna.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/aminoacids.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/dna.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/spc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/tip4p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/dna.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/ffnonbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/ffbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/rna.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/spce.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/watermodels.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/forcefield.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/aminoacids.n.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/dna.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/aminoacids.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/atomtypes.atp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/aminoacids.vsd -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/rna.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/aminoacids.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/rna.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/aminoacids.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/tip3p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/tip4pew.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/forcefield.doc -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/aminoacids.c.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/ions.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/urea.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/rna.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/tip5p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/dna.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/aminoacids.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/dna.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/spc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/tip4p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/dna.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/ffnonbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/ffbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/rna.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/spce.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/watermodels.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/forcefield.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/aminoacids.n.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/ffoplsaa-n.tst -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/atomtypes.atp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/ions_opc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/cmap.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/aminoacids.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/ions_opc3.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/ions_tip3p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/aminoacids.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/opc3.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/tip3p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/tip4pew.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/forcefield.doc -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/aminoacids.c.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/ions_spc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/ions_tip4pew.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/ions_spce.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/aminoacids.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/opc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/spc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/ffnonbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/ffbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/spce.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/watermodels.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/forcefield.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/aminoacids.n.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/ffG53a6.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/vdwradii.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/atomtypes.atp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/aminoacids.vsd -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/aminoacids.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/aminoacids.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/tip3p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/forcefield.doc -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/aminoacids.c.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/ions.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/aminoacids.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/spc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/tip4p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/ffnonbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/ffbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/spce.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/watermodels.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/forcefield.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/aminoacids.n.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/ff_dum.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/ss.map -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/table6-9.xvg -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/flexspce.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/spc216.gro -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/spc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/tip4p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/ca-shift.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/phbres.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/co-shift.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/elements.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/dna.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/aminoacids.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/atomtypes.atp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/aminoacids.vsd -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/rna.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/aminoacids.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/rna.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/aminoacids.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/tip3p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/tip4pew.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/forcefield.doc -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/aminoacids.c.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/ions.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/urea.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/rna.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/tip5p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/dna.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/aminoacids.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/dna.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/spc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/tip4p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/dna.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/ffnonbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/ffbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/rna.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/spce.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/watermodels.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/forcefield.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/aminoacids.n.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/edissoc.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/table6-12.xvg -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/ffG43a1.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/spce.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/ha-shift.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/xlateat.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/tip5p.gro -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/atomtypes.atp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/aminoacids.vsd -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/aminoacids.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/methanol.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/methanol216.gro -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/aminoacids.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/tip3p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/forcefield.doc -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/aminoacids.c.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/ions.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/aminoacids.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/spc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/tip4p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/ffnonbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/ffbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/spce.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/watermodels.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/forcefield.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/aminoacids.n.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/ff_dum.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/ffoplsaa.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/lib64/mpich/bin/GMXRC -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/lib64/mpich/bin/GMXRC.bash -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/lib64/mpich/bin/GMXRC.zsh -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/lib64/mpich/bin/GMXRC.csh -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/lib64/mpich/bin/demux.pl -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/lib64/mpich/bin/xplor2gmx.pl -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/restraint -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/restraint/restraintpotential.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/fileio -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/fileio/tpxio.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/fileio/filetypes.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/fileio/pdbio.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/fileio/oenv.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/fileio/trxio.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/fileio/confio.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/topology -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/topology/atomprop.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/topology/forcefieldparameters.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/topology/ifunc.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/topology/topology.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/topology/index.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/topology/block.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/topology/idef.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/topology/symtab.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/topology/topology_enums.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/topology/atoms.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/trajectoryanalysis -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/trajectoryanalysis/cmdlinerunner.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/trajectoryanalysis/analysissettings.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/trajectoryanalysis/analysismodule.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/trajectoryanalysis/topologyinformation.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/math -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/math/do_fit.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/math/units.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/math/functions.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/math/utilities.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/trajectory -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/trajectory/trajectoryframe.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/pbcutil -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/pbcutil/pbc.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/mdtypes -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/mdtypes/md_enums.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/mdtypes/inputrec.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/selection -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/selection/selectionoption.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/selection/indexutil.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/selection/position.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/selection/selectioncollection.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/selection/selectionenums.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/selection/selection.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/selection/nbsearch.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/selection/selectionoptionbehavior.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/selection/selectionoptionmanager.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/vec.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/real.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/programcontext.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/unique_cptr.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/range.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/fileptr.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/enumerationhelpers.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/arrayref.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/current_function.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/classhelpers.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/baseversion.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/basedefinitions.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/listoflists.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/stringutil.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/exceptions.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/smalloc.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/pleasecite.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/futil.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/flags.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/vectypes.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/gmxassert.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/analysisdata -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/analysisdata/dataframe.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/analysisdata/abstractdata.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/analysisdata/arraydata.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/analysisdata/modules -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/analysisdata/modules/lifetime.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/analysisdata/modules/plot.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/analysisdata/modules/displacement.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/analysisdata/modules/average.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/analysisdata/modules/histogram.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/analysisdata/datamodule.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/analysisdata/analysisdata.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/options -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/options/optionfiletype.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/options/basicoptions.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/options/filenameoptionmanager.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/options/ivaluestore.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/options/ioptionscontainer.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/options/ioptionsbehavior.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/options/optionflags.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/options/filenameoption.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/options/timeunitmanager.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/options/ioptionscontainerwithsections.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/options/abstractoption.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/options/options.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/version.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/libgromacs_export.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/external/boost/stl_interfaces/fwd.hpp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/external/boost/stl_interfaces/iterator_interface.hpp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/mdrun/simulationinputhandle.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/lib64/mpich/bin/gmx_mpich_d -- Set non-toolchain portion of runtime path of "/builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/lib64/mpich/bin/gmx_mpich_d" to "" -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/lib64/mpich/bin -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/lib64/mpich/bin/gmx-completion.bash -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/lib64/mpich/bin/gmx-completion-gmx_mpich_d.bash -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-nmr.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-densmap.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-saltbr.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-grompp.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-dyecoupl.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-x2top.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-msd.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-gyrate-legacy.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-gangle.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-extract-cluster.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-pdb2gmx.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-check.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-rotmat.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-bundle.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-nmeig.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-energy.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-dipoles.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-vanhove.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-eneconv.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-sorient.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-chi.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-genion.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-principal.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-polystat.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-sham.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-sans-legacy.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-rotacf.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-dump.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-saxs-legacy.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-covar.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-solvate.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-spatial.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-rmsf.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-report-methods.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-confrms.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-genrestr.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-trajectory.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-rdf.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-wham.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-tune_pme.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-dos.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-enemat.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-nonbonded-benchmark.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-rama.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-dielectric.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-wheel.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-trjorder.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-mdmat.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-helix.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-mindist.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-pme_error.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-density.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-hbond-legacy.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-pairdist.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-tcaf.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-traj.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-sigeps.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-xpm2ps.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-gyrate.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-velacc.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-hbond.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-helixorient.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-freevolume.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-order.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-lie.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-sasa.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-trjconv.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-scattering.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-mk_angndx.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-clustsize.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-dssp.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-convert-tpr.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-nmtraj.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-bar.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-convert-trj.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-current.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-rms.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-mdrun.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-awh.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-cluster.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-make_edi.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-h2order.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-potential.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-analyze.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-angle.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-spol.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-insert-molecules.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-distance.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-anaeig.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-densorder.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-make_ndx.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-help.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-nmens.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-editconf.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-trjcat.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-genconf.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-rmsdist.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-select.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-filter.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-hydorder.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-disre.1 + popd ~/build/BUILD/gromacs-2026.3-build/gromacs-2026.3 + test -n mpich + module unload mpi/mpich-aarch64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw unload mpi/mpich-aarch64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh unload mpi/mpich-aarch64 + eval $'unset LD_LIBRARY_PATH;\nunset MPI_COMPILER;\nMANPATH=\'/usr/share/man:\'; export MANPATH;\nunset MPI_INCLUDE;\nunset MPI_MAN;\nunset MPI_PYTHON_SITEARCH;\nunset _LMFILES_;\nunset LOADEDMODULES;\nunset CMAKE_PREFIX_PATH;\nPKG_CONFIG_PATH=\':/usr/lib64/pkgconfig:/usr/share/pkgconfig\'; export PKG_CONFIG_PATH;\nunset MPI_PYTHON3_SITEARCH;\nunset MPI_FORTRAN_MOD_DIR;\nunset MPI_HOME;\nunset __MODULES_LMCONFLICT;\n__MODULES_SHARE_MANPATH=\':1\'; export __MODULES_SHARE_MANPATH;\nunset MPI_SYSCONFIG;\nunset MPI_SUFFIX;\n__MODULES_SHARE_PKG_CONFIG_PATH=\':1\'; export __MODULES_SHARE_PKG_CONFIG_PATH;\nunset MPI_PYTHON2_SITEARCH;\nunset MPI_LIB;\nPATH=\'/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin\'; export PATH;\nunset MPI_BIN;\ntest 0;' ++ unset LD_LIBRARY_PATH ++ unset MPI_COMPILER ++ MANPATH=/usr/share/man: ++ export MANPATH ++ unset MPI_INCLUDE ++ unset MPI_MAN ++ unset MPI_PYTHON_SITEARCH ++ unset _LMFILES_ ++ unset LOADEDMODULES ++ unset CMAKE_PREFIX_PATH ++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_FORTRAN_MOD_DIR ++ unset MPI_HOME ++ unset __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:1 ++ export __MODULES_SHARE_MANPATH ++ unset MPI_SYSCONFIG ++ unset MPI_SUFFIX ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ unset MPI_PYTHON2_SITEARCH ++ unset MPI_LIB ++ PATH=/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin ++ export PATH ++ unset MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + for mpi in '' mpich openmpi + test -n openmpi + module load mpi/openmpi-aarch64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw load mpi/openmpi-aarch64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh load mpi/openmpi-aarch64 + eval $'MPI_COMPILER=\'openmpi-aarch64\'; export MPI_COMPILER;\nLD_LIBRARY_PATH=\'/usr/lib64/openmpi/lib\'; export LD_LIBRARY_PATH;\nMPI_MAN=\'/usr/share/man/openmpi-aarch64\'; export MPI_MAN;\nMANPATH=\'/usr/share/man/openmpi-aarch64:/usr/share/man:\'; export MANPATH;\nMPI_INCLUDE=\'/usr/include/openmpi-aarch64\'; export MPI_INCLUDE;\n_LMFILES_=\'/usr/share/modulefiles/mpi/openmpi-aarch64\'; export _LMFILES_;\nLOADEDMODULES=\'mpi/openmpi-aarch64\'; export LOADEDMODULES;\nCMAKE_PREFIX_PATH=\'/usr/lib64/openmpi\'; export CMAKE_PREFIX_PATH;\nPKG_CONFIG_PATH=\'/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig\'; export PKG_CONFIG_PATH;\nMPI_PYTHON3_SITEARCH=\'/usr/lib64/python3.15/site-packages/openmpi\'; export MPI_PYTHON3_SITEARCH;\nMPI_HOME=\'/usr/lib64/openmpi\'; export MPI_HOME;\nMPI_FORTRAN_MOD_DIR=\'/usr/lib64/gfortran/modules/openmpi\'; export MPI_FORTRAN_MOD_DIR;\n__MODULES_LMALTNAME=\'mpi/openmpi-aarch64&as|mpi/default&as|mpi/latest\'; export __MODULES_LMALTNAME;\n__MODULES_LMCONFLICT=\'mpi/openmpi-aarch64&mpi\'; export __MODULES_LMCONFLICT;\n__MODULES_SHARE_MANPATH=\':2\'; export __MODULES_SHARE_MANPATH;\nMPI_SUFFIX=\'_openmpi\'; export MPI_SUFFIX;\nMPI_SYSCONFIG=\'/etc/openmpi-aarch64\'; export MPI_SYSCONFIG;\n__MODULES_SHARE_PKG_CONFIG_PATH=\':1\'; export __MODULES_SHARE_PKG_CONFIG_PATH;\nMPI_LIB=\'/usr/lib64/openmpi/lib\'; export MPI_LIB;\nPATH=\'/usr/lib64/openmpi/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin\'; export PATH;\nMPI_BIN=\'/usr/lib64/openmpi/bin\'; export MPI_BIN;\ntest 0;' ++ MPI_COMPILER=openmpi-aarch64 ++ export MPI_COMPILER ++ LD_LIBRARY_PATH=/usr/lib64/openmpi/lib ++ export LD_LIBRARY_PATH ++ MPI_MAN=/usr/share/man/openmpi-aarch64 ++ export MPI_MAN ++ MANPATH=/usr/share/man/openmpi-aarch64:/usr/share/man: ++ export MANPATH ++ MPI_INCLUDE=/usr/include/openmpi-aarch64 ++ export MPI_INCLUDE ++ _LMFILES_=/usr/share/modulefiles/mpi/openmpi-aarch64 ++ export _LMFILES_ ++ LOADEDMODULES=mpi/openmpi-aarch64 ++ export LOADEDMODULES ++ CMAKE_PREFIX_PATH=/usr/lib64/openmpi ++ export CMAKE_PREFIX_PATH ++ PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.15/site-packages/openmpi ++ export MPI_PYTHON3_SITEARCH ++ MPI_HOME=/usr/lib64/openmpi ++ export MPI_HOME ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi ++ export MPI_FORTRAN_MOD_DIR ++ __MODULES_LMALTNAME='mpi/openmpi-aarch64&as|mpi/default&as|mpi/latest' ++ export __MODULES_LMALTNAME ++ __MODULES_LMCONFLICT='mpi/openmpi-aarch64&mpi' ++ export __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:2 ++ export __MODULES_SHARE_MANPATH ++ MPI_SUFFIX=_openmpi ++ export MPI_SUFFIX ++ MPI_SYSCONFIG=/etc/openmpi-aarch64 ++ export MPI_SYSCONFIG ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ MPI_LIB=/usr/lib64/openmpi/lib ++ export MPI_LIB ++ PATH=/usr/lib64/openmpi/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin ~/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d ~/build/BUILD/gromacs-2026.3-build/gromacs-2026.3 ++ export PATH ++ MPI_BIN=/usr/lib64/openmpi/bin ++ export MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + pushd openmpi_d + DESTDIR=/builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT + /usr/bin/cmake --install redhat-linux-build -- Install configuration: "Release" -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/COPYING -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/template/CMakeLists.txt -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/template/README -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/template/template.cpp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/template/Makefile.pkg -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/template/cmake/FindGROMACS.cmake -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/README.tutor -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/README_FreeEnergyModifications.txt -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/dna.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/aminoacids.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/atomtypes.atp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/aminoacids.vsd -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/rna.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/aminoacids.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/rna.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/aminoacids.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/tip3p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/tip4pew.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/forcefield.doc -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/aminoacids.c.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/ions.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/urea.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/rna.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/tip5p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/dna.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/aminoacids.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/dna.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/spc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/tip4p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/dna.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/ffnonbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/ffbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/rna.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/spce.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/watermodels.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/forcefield.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/aminoacids.n.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/nsfactor.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/tip4p.gro -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/atomtypes.atp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/aminoacids.vsd -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/aminoacids.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/aminoacids.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/tip3p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/forcefield.doc -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/aminoacids.c.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/ions.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/aminoacids.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/spc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/tip4p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/ffnonbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/ffbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/spce.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/watermodels.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/forcefield.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/aminoacids.n.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/ff_dum.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/ffG53a5.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/atommass.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/ffG43a2.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/bonds.dlg -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/dgsolv.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/README -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/sfactor.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/atom_nom.tbl -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/table6-11.xvg -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/dna.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/aminoacids.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/atomtypes.atp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/aminoacids.vsd -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/rna.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/aminoacids.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/rna.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/aminoacids.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/tip3p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/tip4pew.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/forcefield.doc -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/aminoacids.c.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/ions.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/urea.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/rna.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/tip5p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/dna.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/aminoacids.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/dna.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/spc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/tip4p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/dna.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/ffnonbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/ffbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/rna.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/spce.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/watermodels.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/forcefield.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/aminoacids.n.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/residuetypes.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/specbond.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/dna.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/aminoacids.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/atomtypes.atp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/aminoacids.vsd -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/rna.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/aminoacids.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/rna.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/aminoacids.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/tip3p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/tip4pew.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/forcefield.doc -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/aminoacids.c.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/ions.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/urea.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/rna.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/tip5p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/dna.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/aminoacids.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/dna.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/spc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/tip4p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/dna.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/ffnonbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/ffbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/rna.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/spce.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/watermodels.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/forcefield.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amberGS.ff/aminoacids.n.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/atomtypes.atp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/aminoacids.vsd -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/aminoacids.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/ethanol.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/methanol.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/aminoacids.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/1propanol.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/tip3p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/tip4pew.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/forcefield.doc -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/aminoacids.c.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/ions.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/tip5p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/aminoacids.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/tip5pe.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/spc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/tip4p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/atomname2type.n2t -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/ffnonbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/ffbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/spce.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/watermodels.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/forcefield.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/oplsaa.ff/aminoacids.n.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/scatteringfactors.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/flexwat-ferguson.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/atomtypes.atp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/aminoacids.vsd -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/aminoacids.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/aminoacids.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/tip3p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/forcefield.doc -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/aminoacids.c.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/ions.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/aminoacids.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/spc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/tip4p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/atomname2type.n2t -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/ffnonbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/ffbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/spce.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/watermodels.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/forcefield.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/aminoacids.n.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/ff_dum.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/atomtypes.atp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/aminoacids.vsd -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/aminoacids.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/aminoacids.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/tip3p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/forcefield.doc -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/aminoacids.c.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/ions.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/aminoacids.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/spc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/tip4p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/ffnonbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/ffbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/spce.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/watermodels.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/forcefield.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/aminoacids.n.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/ff_dum.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/table6-8.xvg -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/atomtypes.atp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/ions_opc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/aminoacids.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/ions_opc3.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/ions_tip3p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/aminoacids.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/opc3.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/tip3p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/tip4pew.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/forcefield.doc -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/aminoacids.c.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/ions_spc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/ions_tip4pew.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/ions_spce.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/aminoacids.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/opc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/spc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/ffnonbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/ffbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/spce.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/watermodels.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/forcefield.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber14sb.ff/aminoacids.n.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/ps.m2p -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/cb-shift.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/tip3p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/ffG45a3.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/flexspc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/dna.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/aminoacids.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/atomtypes.atp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/aminoacids.vsd -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/rna.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/aminoacids.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/rna.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/aminoacids.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/tip3p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/tip4pew.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/forcefield.doc -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/aminoacids.c.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/ions.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/urea.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/rna.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/tip5p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/dna.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/aminoacids.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/dna.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/spc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/tip4p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/dna.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/ffnonbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/ffbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/rna.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/spce.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/watermodels.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/forcefield.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber94.ff/aminoacids.n.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/electroneg.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/random.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/sw.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/dna.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/aminoacids.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/atomtypes.atp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/rna.c.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/cmap.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/aminoacids.vsd -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/rna.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/aminoacids.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/ffnabonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/rna.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/aminoacids.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/dna.c.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/tip3p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/rna.n.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/lipids.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/forcefield.doc -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/aminoacids.c.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/ions.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/rna.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/tip5p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/aminoacids.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/tips3p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/dna.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/spc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/tip4p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/dna.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/ffnonbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/lipids.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/ffnanonbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/ffbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/rna.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/spce.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/watermodels.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/forcefield.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/dna.n.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/charmm27.ff/aminoacids.n.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/table6-10.xvg -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/ions.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/atomtypes.atp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/aminoacids.vsd -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/aminoacids.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/dppc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/aminoacids.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/tip3p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/forcefield.doc -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/aminoacids.c.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/ions.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/aminoacids.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/popc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/tmcl.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/spc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/tip4p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/ffnonbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/ffbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/spce.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/watermodels.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/forcefield.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/aminoacids.n.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos54a7.ff/ff_dum.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/dna.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/aminoacids.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/atomtypes.atp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/aminoacids.vsd -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/rna.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/aminoacids.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/rna.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/aminoacids.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/tip3p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/tip4pew.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/forcefield.doc -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/aminoacids.c.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/ions.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/urea.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/rna.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/tip5p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/dna.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/aminoacids.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/dna.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/spc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/tip4p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/dna.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/ffnonbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/ffbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/rna.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/spce.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/watermodels.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/forcefield.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber96.ff/aminoacids.n.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/dna.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/aminoacids.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/atomtypes.atp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/aminoacids.vsd -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/rna.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/aminoacids.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/rna.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/aminoacids.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/tip3p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/tip4pew.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/forcefield.doc -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/aminoacids.c.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/ions.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/urea.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/rna.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/tip5p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/dna.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/aminoacids.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/dna.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/spc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/tip4p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/dna.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/ffnonbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/ffbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/rna.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/spce.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/watermodels.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/forcefield.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/aminoacids.n.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/ffoplsaa-n.tst -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/atomtypes.atp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/ions_opc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/cmap.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/aminoacids.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/ions_opc3.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/ions_tip3p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/aminoacids.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/opc3.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/tip3p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/tip4pew.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/forcefield.doc -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/aminoacids.c.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/ions_spc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/ions_tip4pew.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/ions_spce.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/aminoacids.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/opc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/spc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/ffnonbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/ffbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/spce.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/watermodels.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/forcefield.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber19sb.ff/aminoacids.n.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/ffG53a6.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/vdwradii.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/atomtypes.atp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/aminoacids.vsd -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/aminoacids.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/aminoacids.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/tip3p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/forcefield.doc -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/aminoacids.c.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/ions.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/aminoacids.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/spc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/tip4p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/ffnonbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/ffbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/spce.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/watermodels.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/forcefield.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/aminoacids.n.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/ff_dum.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/ss.map -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/table6-9.xvg -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/flexspce.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/spc216.gro -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/spc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/tip4p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/ca-shift.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/phbres.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/co-shift.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/elements.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/dna.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/aminoacids.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/atomtypes.atp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/aminoacids.vsd -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/rna.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/aminoacids.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/rna.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/aminoacids.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/tip3p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/tip4pew.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/forcefield.doc -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/aminoacids.c.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/ions.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/urea.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/rna.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/tip5p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/dna.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/aminoacids.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/dna.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/spc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/tip4p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/dna.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/ffnonbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/ffbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/rna.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/spce.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/watermodels.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/forcefield.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/aminoacids.n.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/edissoc.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/table6-12.xvg -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/ffG43a1.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/spce.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/ha-shift.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/xlateat.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/tip5p.gro -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/atomtypes.atp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/aminoacids.vsd -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/aminoacids.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/methanol.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/methanol216.gro -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/aminoacids.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/tip3p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/forcefield.doc -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/aminoacids.c.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/ions.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/aminoacids.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/spc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/tip4p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/ffnonbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/ffbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/spce.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/watermodels.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/forcefield.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/aminoacids.n.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a1.ff/ff_dum.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/ffoplsaa.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/lib64/openmpi/bin/GMXRC -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/lib64/openmpi/bin/GMXRC.bash -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/lib64/openmpi/bin/GMXRC.zsh -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/lib64/openmpi/bin/GMXRC.csh -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/lib64/openmpi/bin/demux.pl -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/lib64/openmpi/bin/xplor2gmx.pl -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/restraint -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/restraint/restraintpotential.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/fileio -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/fileio/tpxio.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/fileio/filetypes.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/fileio/pdbio.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/fileio/oenv.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/fileio/trxio.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/fileio/confio.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/topology -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/topology/atomprop.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/topology/forcefieldparameters.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/topology/ifunc.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/topology/topology.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/topology/index.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/topology/block.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/topology/idef.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/topology/symtab.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/topology/topology_enums.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/topology/atoms.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/trajectoryanalysis -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/trajectoryanalysis/cmdlinerunner.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/trajectoryanalysis/analysissettings.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/trajectoryanalysis/analysismodule.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/trajectoryanalysis/topologyinformation.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/math -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/math/do_fit.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/math/units.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/math/functions.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/math/utilities.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/trajectory -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/trajectory/trajectoryframe.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/pbcutil -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/pbcutil/pbc.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/mdtypes -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/mdtypes/md_enums.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/mdtypes/inputrec.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/selection -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/selection/selectionoption.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/selection/indexutil.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/selection/position.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/selection/selectioncollection.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/selection/selectionenums.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/selection/selection.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/selection/nbsearch.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/selection/selectionoptionbehavior.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/selection/selectionoptionmanager.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/vec.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/real.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/programcontext.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/unique_cptr.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/range.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/fileptr.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/enumerationhelpers.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/arrayref.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/current_function.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/classhelpers.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/baseversion.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/basedefinitions.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/listoflists.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/stringutil.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/exceptions.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/smalloc.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/pleasecite.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/futil.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/flags.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/vectypes.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/gmxassert.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/analysisdata -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/analysisdata/dataframe.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/analysisdata/abstractdata.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/analysisdata/arraydata.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/analysisdata/modules -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/analysisdata/modules/lifetime.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/analysisdata/modules/plot.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/analysisdata/modules/displacement.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/analysisdata/modules/average.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/analysisdata/modules/histogram.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/analysisdata/datamodule.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/analysisdata/analysisdata.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/options -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/options/optionfiletype.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/options/basicoptions.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/options/filenameoptionmanager.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/options/ivaluestore.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/options/ioptionscontainer.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/options/ioptionsbehavior.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/options/optionflags.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/options/filenameoption.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/options/timeunitmanager.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/options/ioptionscontainerwithsections.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/options/abstractoption.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/options/options.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/version.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/libgromacs_export.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/external/boost/stl_interfaces/fwd.hpp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/external/boost/stl_interfaces/iterator_interface.hpp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/mdrun/simulationinputhandle.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/lib64/openmpi/bin/gmx_openmpi_d -- Set non-toolchain portion of runtime path of "/builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/lib64/openmpi/bin/gmx_openmpi_d" to "" -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/lib64/openmpi/bin -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/lib64/openmpi/bin/gmx-completion.bash -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/lib64/openmpi/bin/gmx-completion-gmx_openmpi_d.bash -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-nmr.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-densmap.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-saltbr.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-grompp.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-dyecoupl.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-x2top.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-msd.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-gyrate-legacy.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-gangle.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-extract-cluster.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-pdb2gmx.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-check.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-rotmat.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-bundle.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-nmeig.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-energy.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-dipoles.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-vanhove.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-eneconv.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-sorient.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-chi.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-genion.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-principal.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-polystat.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-sham.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-sans-legacy.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-rotacf.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-dump.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-saxs-legacy.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-covar.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-solvate.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-spatial.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-rmsf.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-report-methods.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-confrms.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-genrestr.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-trajectory.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-rdf.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-wham.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-tune_pme.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-dos.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-enemat.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-nonbonded-benchmark.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-rama.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-dielectric.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-wheel.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-trjorder.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-mdmat.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-helix.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-mindist.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-pme_error.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-density.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-hbond-legacy.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-pairdist.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-tcaf.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-traj.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-sigeps.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-xpm2ps.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-gyrate.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-velacc.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-hbond.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-helixorient.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-freevolume.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-order.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-lie.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-sasa.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-trjconv.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-scattering.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-mk_angndx.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-clustsize.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-dssp.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-convert-tpr.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-nmtraj.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-bar.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-convert-trj.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-current.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-rms.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-mdrun.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-awh.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-cluster.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-make_edi.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-h2order.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-potential.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-analyze.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-angle.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-spol.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-insert-molecules.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-distance.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-anaeig.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-densorder.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-make_ndx.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-help.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-nmens.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-editconf.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-trjcat.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-genconf.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-rmsdist.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-select.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-filter.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-hydorder.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-disre.1 + popd ~/build/BUILD/gromacs-2026.3-build/gromacs-2026.3 + test -n openmpi + module unload mpi/openmpi-aarch64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw unload mpi/openmpi-aarch64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh unload mpi/openmpi-aarch64 + eval $'unset MPI_COMPILER;\nunset LD_LIBRARY_PATH;\nunset MPI_MAN;\nMANPATH=\'/usr/share/man:\'; export MANPATH;\nunset MPI_INCLUDE;\nunset _LMFILES_;\nunset LOADEDMODULES;\nunset CMAKE_PREFIX_PATH;\nPKG_CONFIG_PATH=\':/usr/lib64/pkgconfig:/usr/share/pkgconfig\'; export PKG_CONFIG_PATH;\nunset MPI_PYTHON3_SITEARCH;\nunset MPI_HOME;\nunset MPI_FORTRAN_MOD_DIR;\nunset __MODULES_LMALTNAME;\nunset __MODULES_LMCONFLICT;\n__MODULES_SHARE_MANPATH=\':1\'; export __MODULES_SHARE_MANPATH;\nunset MPI_SUFFIX;\nunset MPI_SYSCONFIG;\n__MODULES_SHARE_PKG_CONFIG_PATH=\':1\'; export __MODULES_SHARE_PKG_CONFIG_PATH;\nunset MPI_LIB;\nPATH=\'/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin\'; export PATH;\nunset MPI_BIN;\ntest 0;' ++ unset MPI_COMPILER ++ unset LD_LIBRARY_PATH ++ unset MPI_MAN ++ MANPATH=/usr/share/man: ++ export MANPATH ++ unset MPI_INCLUDE ++ unset _LMFILES_ ++ unset LOADEDMODULES ++ unset CMAKE_PREFIX_PATH ++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_HOME ++ unset MPI_FORTRAN_MOD_DIR ++ unset __MODULES_LMALTNAME ++ unset __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:1 ++ export __MODULES_SHARE_MANPATH ++ unset MPI_SUFFIX ++ unset MPI_SYSCONFIG ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ unset MPI_LIB ++ PATH=/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin ++ export PATH ++ unset MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + mkdir -p /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/doc/gromacs + install -pm 644 AUTHORS COPYING README /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/doc/gromacs + install -cpm 644 serial/docs/manual/gromacs.pdf /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/doc/gromacs/manual.pdf + install -cpm 644 /builddir/build/SOURCES/gromacs-README.fedora /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/doc/gromacs/README.fedora + pushd /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT ~/build/BUILD/gromacs-2026.3-build/BUILDROOT ~/build/BUILD/gromacs-2026.3-build/gromacs-2026.3 + rm .//usr/bin/GMXRC .//usr/bin/GMXRC.bash .//usr/bin/GMXRC.csh .//usr/bin/GMXRC.zsh + rm .//usr/lib64/mpich/bin/GMXRC .//usr/lib64/mpich/bin/GMXRC.bash .//usr/lib64/mpich/bin/GMXRC.csh .//usr/lib64/mpich/bin/GMXRC.zsh .//usr/lib64/openmpi/bin/GMXRC .//usr/lib64/openmpi/bin/GMXRC.bash .//usr/lib64/openmpi/bin/GMXRC.csh .//usr/lib64/openmpi/bin/GMXRC.zsh .//usr/lib64/mpich/bin/demux.pl .//usr/lib64/mpich/bin/xplor2gmx.pl .//usr/lib64/openmpi/bin/demux.pl .//usr/lib64/openmpi/bin/xplor2gmx.pl + for bin in demux.pl xplor2gmx.pl + mv .//usr/bin/demux.pl .//usr/bin/g_demux.pl + for bin in demux.pl xplor2gmx.pl + mv .//usr/bin/xplor2gmx.pl .//usr/bin/g_xplor2gmx.pl + mkdir -p .//usr/share/bash-completion/completions + for bin in gmx{,_d} + cat .//usr/bin/gmx-completion.bash .//usr/bin/gmx-completion-gmx.bash + rm .//usr/bin/gmx-completion-gmx.bash + for bin in gmx{,_d} + cat .//usr/bin/gmx-completion.bash .//usr/bin/gmx-completion-gmx_d.bash + rm .//usr/bin/gmx-completion-gmx_d.bash + rm .//usr/bin/gmx-completion.bash .//usr/lib64/mpich/bin/gmx-completion-gmx_mpich.bash .//usr/lib64/mpich/bin/gmx-completion-gmx_mpich_d.bash .//usr/lib64/mpich/bin/gmx-completion.bash .//usr/lib64/openmpi/bin/gmx-completion-gmx_openmpi.bash .//usr/lib64/openmpi/bin/gmx-completion-gmx_openmpi_d.bash .//usr/lib64/openmpi/bin/gmx-completion.bash + /usr/bin/find-debuginfo -j32 --strict-build-id -m -i --build-id-seed 2026.3-1.fc46 --unique-debug-suffix -2026.3-1.fc46.aarch64 --unique-debug-src-base gromacs-2026.3-1.fc46.aarch64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 --remove-section .gnu.build.attributes -S debugsourcefiles.list /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3 find-debuginfo: starting Extracting debug info from 11 files DWARF-compressing 11 files